BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488212
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 898 0.0
> AT5G13880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G47920.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:4477354-4478109 REVERSE LENGTH=756
Length=756
Score = 898 bits (486), Expect = 0.0
Identities = 635/703 (90%), Gaps = 26/703 (4%)
Strand=Plus/Plus
Query 1 ATGAAGAAGGCGGCAGAATTCGTGAAGCAGATAATAAACATGTTGAGTGGTCTAGCAAAG 60
|||||||||||| |||| |||||||||||||||||||||||||||| | |||||||||||
Sbjct 67 ATGAAGAAGGCGTCAGATTTCGTGAAGCAGATAATAAACATGTTGACTTGTCTAGCAAAG 126
Query 61 GACAAGACAAAGGAGCTTAAGAGGAAGACAAGAGCCTTCAAGACACGTCTCGTAATATTC 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GACAAGACGAAGGAGCTTAAGAGGAAGACAAGAGCCTTCAAGACACGTCTCGTAATATTT 186
Query 121 TCGCTGCTCCACAACAGACACATGGTGGTGAGCTCTCTCTCTCACAAGCTCAAGACCAAC 180
|||||||||||||||||||||||||||||| | ||| | |||||||||||||||| |||
Sbjct 187 TCGCTGCTCCACAACAGACACATGGTGGTGGGTTCTTTGTCTCACAAGCTCAAGAGCAAT 246
Query 181 CCAATATCAAAAAAGATAGATCATGATAACAAGGATGATGAAGATCATCATGATCAAAAC 240
| || |||||||||||||||||||||||||||||||| | ||||| |||||||| |||||
Sbjct 247 CAAACATCAAAAAAGATAGATCATGATAACAAGGATGTTCAAGATTATCATGATAAAAAC 306
Query 241 ATGGTGGTGGTGTATAGTCACAACGTTAACGCCATGTCTAGCACTCCTGTCTCTCCGCAT 300
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATGGTGGTTGTGTATAGCCAAAACGTTAACGCCATGTCTAGCACTCCTGTCTCTCCGCAT 366
Query 301 GTACAATATCAATATACggaggaggaagaagataaagaagaagaagaggaagaggaggaa 360
||||||||||||||||| ||||||||||| ||| ||||||| | |||||| || ||
Sbjct 367 GTACAATATCAATATACAGAGGAGGAAGATGAT---GAAGAAG--G-GGAAGA--AG-AA 417
Query 361 gaagaaaagTATCCAGACTTGAGACACTCGCTGTTTGAGGCAGAGGGTTCGGTGATAGAG 420
||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 418 -AAG-----TATCCAGACTTGAGACACTCGTTGTTTGAGGCAGAAGGTTCGGTGATAGAG 471
Query 421 ATGGTGAAGCACTCCAAGGAGGACAATGGAGAAGAGTTTCGGTTGGAAGACGAGATTGAC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 ATGGTGAAGCACTCCAAGGAGGACAATGGAGAAGAGTTTCGGTTGGAAGACGAGATCGAC 531
Query 481 AAAGTGGCTGATCTTTTTATTACCCGCTTCCACCGACAGATGTGGTTGCAGAAGCAACTG 540
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 532 AAAGTGGCTGATCTTTTTATTACCCGCTTCCATAGACAGATGTGGTTACAGAAGCAACTG 591
Query 541 TCGT-TCGAGAGTCCAGATACATCCTCCCCA-TTCCATTCTTAAGATACATATATTTGAT 598
|| | ||||||||||||||||| |||||||| ||| |||||||| |||||| |||||||
Sbjct 592 TC-TCTCGAGAGTCCAGATACACCCTCCCCAATTC-ATTCTTAATATACATGTATTTGAC 649
Query 599 AC-CCTCCTTGtttttt-ttt-GTGGCGAAGGATTCAATGATCCTTATAGATTTT-GTTT 654
| |||||||||||||| ||| | || |||||| |||||||||| || ||||||| ||||
Sbjct 650 GCTCCTCCTTGTTTTTTGTTTCGGGGTGAAGGACTCAATGATCCATACAGATTTTTGTTT 709
Query 655 -ACGTAGTGAAA--TATGAAAACGGGACATGTTTACTAATTTC 694
||||||||||| ||||||||| |||||| |||| |||||||
Sbjct 710 TACGTAGTGAAAAATATGAAAACAGGACATATTTATTAATTTC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5