BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488214
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13890.1 | Symbols: | Family of unknown function (DUF716) ... 1759 0.0
> AT5G13890.1 | Symbols: | Family of unknown function (DUF716)
| chr5:4478843-4480921 REVERSE LENGTH=1345
Length=1345
Score = 1759 bits (952), Expect = 0.0
Identities = 1084/1147 (95%), Gaps = 11/1147 (1%)
Strand=Plus/Plus
Query 2 CAAATCCCGACCAACAACAACAAAACCCCAAAATCTCCGCTTCGAAAATGGGAGAGATGA 61
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 4 CAAATCCCGACCAACAACAACAAAACCCTAAAATC-AAGCTTCGAAAATGGGAGAGATGA 62
Query 62 TGTACAAGCTCTTCGCTTCAGCGTCACTACTAACCCTAGGATTGTATCATCTCATCTGCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGTACAAGCTCTTCGCTTCAGCGTCACTACTAACCCTAGGATTGTATCATCTCATCTGCA 122
Query 122 CTTTCTTCCATCTCCTCAAATCTCCTCAATCCTACGCCGCGAAACCCTTTTACCCTTTCC 181
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 123 CTTTCTTCCATCTCCTTAAATCTCCCCAATCCTACGCCGCGAAACCCTTTTACCCTTTTC 182
Query 182 CTCGTCTCTCCTCCGTCACCGGAAACAACCACCACAATCATAACCGCCTCCAAAATCTAC 241
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 183 CACGTCTCTCCTCCGTCACCGGAAACAACCACCACAATCACAACCGCCTCCAAAATCTAC 242
Query 242 CACTGTTCATCCTCATACTCTCTCTTTTCGTCGCTTTCCTTCACGAAACCCTAATTTCCT 301
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 243 CACTGTTCATCCTCATACTCTCTCTATTCGTCGCTTTCCTTCACGAAACCCTAATCTCCT 302
Query 302 TCTACTCCGATCCTCTCGTCAAAGGAAGTACTCCTGTTCACCGATTCTCATCTCTCAATT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCTACTCCGATCCTCTCGTCAAAGGAAGTACTCCTGTTCACCGATTCTCATCTCTCAATT 362
Query 362 CCGCCGCCGTGTTCTTCCTCTTCCTCATCATCGCCGTTTACTACCTCCTCTCCGATTCAA 421
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 363 CCGCCGCCGTGTTCTTCCTCTTCCTCATCATCGCCATTTACTATCTCCTCTCCGATTCAA 422
Query 422 CCTCCTTAATCCCTCTTCCTTCCGATCTCCTCTTCGCACTCGCTTCCGTTGGTTTCTTCC 481
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 423 CCTCGTTAATCCCTCTCCCTTCCGATCTCCTCTTCGCACTCGCCTCCGTTGGTTTCTTCC 482
Query 482 TCCATTACTCAGCCGCATCTTCATCGGCTGCAATCCAAACATCGGATCTTCAAGCTCATT 541
|||||||||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 483 TCCATTACTCCGCCGCGTCTTCATCAGCTGCAATTCAAACATCTGATCTTCAAGCTCATT 542
Query 542 GTGATTCCCTCTCTGCTCGTATCTCCGCCTTATGCTCTCTCCTCTGCTTGCTTCTCGCTT 601
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 543 GTGATTCCCTCTCTGCTCGTATCTCCGCGTTATGCTCTCTCCTCTGTTTGCTTCTCGCTT 602
Query 602 GCCGTTCAAGACTCTTTATCGCTGACGCTGCTCTCGCTGCTGCCATTTGTCTTCAAGGTC 661
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCCGTTCAAGACTCTTTATTGCTGACGCTGCTCTCGCTGCTGCCATTTGTCTTCAAGGTC 662
Query 662 TCTGGCAGCTTCAGACTGGACTCTCTCTCTACGTTGATGGGTTTATTCCCGAGGGATGTC 721
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 663 TCTGGCAGCTTCAGACTGGACTCTCTCTCTACGTTGATGGGTTTATTCCTGAGGGATGTC 722
Query 722 ATCGTCTTCTTGATGTTCAAAGCGGCGTTGAAGGATCAACAAAATGTGATATTCAGGACT 781
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 723 ATCGTCTTCTTGATGTTCAAAGCGGTGTTGAAGGATCAACCCAATGTGATATTCAGGACT 782
Query 782 CTAAGCTAAGGGCTGTCTCAATATTGGATCTAATGTTCACTGTGCACGTTGTCCTTGTGG 841
|||||||||| ||||| || ||||||||||||||||||||||| ||||| || |||||||
Sbjct 783 CTAAGCTAAGAGCTGTTTCTATATTGGATCTAATGTTCACTGTACACGTCGTGCTTGTGG 842
Query 842 TTATCCTCATCTTTGTGACCTACACGATGGTGGTGATGGCGGCCGGAGTGAGAAGAACTG 901
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTATCCTCATCTTTGTGACTTACACGATGGTGGTGATGGCGGCCGGAGTGAGAAGAACTG 902
Query 902 GTTCTTATGAGGCTTTGCCCACCAATAATGCTGATTCTAATCACATTCAGATGAAGTCGT 961
|||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 903 GTTCTTATGAAGCTTTGCCGACTAACAATGCTGATTCTAATCACATTCAGATGAAGTCGT 962
Query 962 TGACCGGCACTCAGGCTTGAAACCTTATCAA-TCCTCTTGCTTTGCCtttttttttGATG 1020
|||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |||
Sbjct 963 TGACAGGCACTCAGGCTTGAAACCTTATCAAATCCTATCGCTTTGCCTTTTTTTGAGATT 1022
Query 1021 TGCAGTTGGAAGCCTAACGACAAAAAGCTGTCTTGAACATTGGATCTT---ATTATGGGC 1077
|||| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 1023 TGCATTTGGAAGCCTAACGACATGAAGCTGTCTTGAAGATTGGATCTTCTTATTATGGGC 1082
Query 1078 CCAAGCA-TAGGCCCAGATTTGTCAAGTACTGTATATTTGTATGCTTTGATAGCTTGAAA 1136
||||||| | ||||||||| |||| ||||| || || |||||||||||||||||||||
Sbjct 1083 CCAAGCACT-GGCCCAGATATGTCTTGTACT--AT-TT-GTATGCTTTGATAGCTTGAAA 1137
Query 1137 TCTGGAG 1143
| |||||
Sbjct 1138 TTTGGAG 1144
Score = 182 bits (98), Expect = 1e-44
Identities = 134/149 (90%), Gaps = 12/149 (8%)
Strand=Plus/Plus
Query 1155 AAAATGATAAAAGGATAAAACAATCAAATGTAGCTTGAAACGGCCATAACATAAAGTACC 1214
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 AAAATGATAAAAGGATAAAACAATCAAATGCAGCTTGAAACGGCCATAACATAAAGTACC 1256
Query 1215 TTATGGTGGTGCGAATATTTATGTGTTT-T---A-T-T------GCTGAAAGCTACGACA 1262
|||||||||||||||||||| ||||||| | | | | ||||||||||||||||
Sbjct 1257 TTATGGTGGTGCGAATATTTTTGTGTTTCTTTCACTCTTTTATTGCTGAAAGCTACGACA 1316
Query 1263 CTTGTCTTAATATATTGTTTCCGTAAGTC 1291
||||||||||||||||||||||| |||||
Sbjct 1317 CTTGTCTTAATATATTGTTTCCGCAAGTC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63503689425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5