BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488216

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13900.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   538    2e-152


> AT5G13900.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:4481232-4481889 
REVERSE LENGTH=583
Length=583

 Score =  538 bits (291),  Expect = 2e-152
 Identities = 410/464 (88%), Gaps = 22/464 (5%)
 Strand=Plus/Plus

Query  39   CGTTGCACTTCTTCTAGTTGCAGCTAACTCAGGGATGCAAATAAGTGGGCAAAGCGTTTC  98
            ||||| |||||||||||||||||||| ||| |||||||  |||| |||||| ||||||||
Sbjct  46   CGTTGTACTTCTTCTAGTTGCAGCTAGCTCGGGGATGCGGATAAATGGGCAGAGCGTTTC  105

Query  99   GTGCCTAAACCAGCTTGCCCCATGCCTAAATTACCTGAACGGTACCAAGGAAGTGCCTCA  158
            ||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| |||||
Sbjct  106  GTGTCTAAACCAACTTGCTCCATGCCTAAATTACCTGAATGGGACCAAGGAAGTACCTCA  165

Query  159  AGTTTGCTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT  218
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  166  AGTTTGTTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTAT  225

Query  219  GATTAGTAACCG-AGGAAGTTCTCAGGCCGAACGAGCTGGCATCGATGTCAATGATGCTC  277
            ||||||||||||  || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct  226  GATTAGTAACCGTTGG-AGTTCTCAAGCCGAGCGAGCTGGCATCGATGTCAATGATGCTC  284

Query  278  AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCAATTGCTTGCTTAACTCGATCTC  337
            ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| 
Sbjct  285  AAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCCATTGCTTGCTTGACTCGTTCTA  344

Query  338  GAGGA---TCTACAAACTCAAACAGAAGTTCCTCC-TCTGGCAACTCCTTCTCTCAATCC  393
            |||||   |||||||||||| || ||||||||||| | ||||||| |||| ||||| |||
Sbjct  345  GAGGAGGATCTACAAACTCAGACCGAAGTTCCTCCAT-TGGCAACACCTTTTCTCAGTCC  403

Query  394  TATTGGATGACAACATTAGCTTTTGCA-CTCA-TCGTTTTGTCAT-TTAT-ATT-C-T--  445
            ||||||||||||||||||||| ||||| | || | |||||||||| ||   ||  | |  
Sbjct  404  TATTGGATGACAACATTAGCTATTGCAGC-CACT-GTTTTGTCATATTGCCATCACATAA  461

Query  446  TTCAG-T-AATCTC--ATTGTCTATAGCAACTCTGCTTTGCttt  485
            || || | ||||||  ||||||||||||| || |||||||||||
Sbjct  462  TT-AGCTGAATCTCTCATTGTCTATAGCAGCTTTGCTTTGCTTT  504


 Score = 84.2 bits (45),  Expect = 1e-15
 Identities = 54/58 (93%), Gaps = 1/58 (2%)
 Strand=Plus/Plus

Query  477  CTTTGCtttttttGATGCTGTATGAGTTAATTATGATTATTGGTCGTCACCAACACAT  534
            ||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  526  CTTTG-TTTTTTTAATGCTCTATTAGTTAATTATGATTATTGGTCGTCACCAACACAT  582



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5