BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488218 Length=1194 Score E Sequences producing significant alignments: (Bits) Value AT5G13920.1 | Symbols: | GRF zinc finger / Zinc knuckle protei... 952 0.0 > AT5G13920.1 | Symbols: | GRF zinc finger / Zinc knuckle protein | chr5:4485931-4487433 REVERSE LENGTH=1248 Length=1248 Score = 952 bits (515), Expect = 0.0 Identities = 617/665 (93%), Gaps = 11/665 (2%) Strand=Plus/Plus Query 528 AGAATGTCAAGCTTCTGTTAGTGGTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 587 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 585 AGAATGTCAAGATTCTGTTA---GTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 641 Query 588 CACTGCAATGTCTGTTTCTGATGTACATTTTATTGCTCTGAACCAAGGTATCCCTCTGTT 647 || | |||||||||||||||||||||| | || ||||||||||||||||||| ||||||| Sbjct 642 CATTTCAATGTCTGTTTCTGATGTACACTCTACTGCTCTGAACCAAGGTATCTCTCTGTT 701 Query 648 TGAACCGTTTTCGATCGAACCTGAAGAGGCATGGAAAAAGACTCCA-CATGGTGATCAGC 706 ||| ||| || ||| ||||||||||||| |||||||||||||| || |||||||||||| Sbjct 702 TGATCCGGTTACGAGCGAACCTGAAGAGCCATGGAAAAAGACT-CAGAATGGTGATCAGC 760 Query 707 CAACAAATAGTGCTCTTTCTAAGTTGAGTCTGGATGAAGCAG-TGAGTGATTTGATCAGA 765 ||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| Sbjct 761 CAACAAATAGTGCTCTTTCTAAGTTGAGTGTGGATGAAGC-GATGAGTGATTTGATCAGA 819 Query 766 GATACTGTCTCTAGTGGTTCTGCTGTGATACATGGAAGGACAACCCGTGAGCAACCTGGA 825 ||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||| | Sbjct 820 GATACGGTCTCTAGTGGTTCTGTTGTGATACATGGAAGGACAAACCATGAGCAACCTGAA 879 Query 826 ATTGGTGAAGCTGAGTGGTCATTCCCTTACTTGCAGGACCTAATTGATCAGTACAACTCA 885 |||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 880 ATTGATGGAGCTGAGTGGTCATTCCCTTGCTTGCAGAACCTAATTGATCAGTACAACTCA 939 Query 886 GAGAAGCTTCAATTGGAGAGTATTTCGGGGAAACATGTACAAGTGTTGAGTGAATTTATG 945 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 940 GAGAAGCTTCAATTGGAGAGTATTTCAGGGAAACATGTACAAATGTTGAGTGAATTTATG 999 Query 946 TCTTCGTACAGGCGACTAAGGTTACTTCACGAGAAAACTTGTCACCTCAGGAAAACTTTA 1005 |||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 1000 GCTTCGTACAGGCGACTAAGGTTACTTCATGAGAAAACTAGTCATCTCAGGAAAACTTTA 1059 Query 1006 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGA-GTCTGAGACATTAGAATTTGGAGCAAG 1064 |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 1060 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGAAG-CTGAGACATTAAAATTTGGAGCAAG 1118 Query 1065 TTGTAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAAAGGATGCAGGAGACTGCAGA 1124 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1119 TTGCAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAGAGGATGCAGGAAACTGCAGA 1178 Query 1125 -ACAACTAGGGAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGCTCCGAAGAGAA 1183 | ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1179 TA-AACTAGGAAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGGTCTAAAGAGAA 1237 Query 1184 GAAGA 1188 ||||| Sbjct 1238 GAAGA 1242 Score = 885 bits (479), Expect = 0.0 Identities = 537/565 (95%), Gaps = 3/565 (1%) Strand=Plus/Plus Query 1 ATGCAGACCGGAAATTGCTTCCGATGCCGTCAGGCTGGTCACTGGATCAGCGATTGTCCT 60 |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 16 ATGCAGACCGGAGATTGCTTCCGATGCCGTCAGGCTGGCCACTGGATCAACGATTGTCCT 75 Query 61 CTCAAATCCAAAACCGATGATGATCCTCCACCGGCGATCCACTGCACTTGCGGTGGAGGT 120 ||||||||| | ||| ||||||||||||||||||||||| ||| | ||||| |||||| Sbjct 76 CTCAAATCCTACACC---GATGATCCTCCACCGGCGATCCAATGCCCATGCGGCGGAGGT 132 Query 121 TTCTGCGAAATCAAGGTCGCGAATACTCGAGAAAATGCCGGAAGGAAGTTCTACAAGTGT 180 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 133 TTCTGTGAAATCAAGGTCGCGAATACTCGAGAAAATCCCGGAAGGAAGTTCTACAAGTGT 192 Query 181 CCAACGGCTCAGAATTGCAAATTCTTCAAATGGTGTGACAAAGTAACCGATGAAGATATC 240 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 193 CCAACGGCTCAGAATTGCTGTTTCTTCAAATGGTGTGACAAAGTAACCGACGAAGATATC 252 Query 241 AGATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 AAATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 312 Query 301 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAGAGGGTTTTGGAGCT 360 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 313 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAAAGGGATTTGGAGCT 372 Query 361 TGTGGATTCTTCAAATGGGAAGATGTTGAGATGATTCCGAGTTGTGATGTAATGGATGAG 420 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 373 TGTGGATTCTTCAAGTGGGAAGATGTTGAGATGATTCCTAGTTGTGATGTTATGGATGAG 432 Query 421 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTCCAGGCT 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 433 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTACAGGCT 492 Query 481 CGTGGTGGCGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 540 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 493 CGTGGTGGTGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 552 Query 541 TCTGTTAGTGGTGCAGAGGATGATT 565 |||||||||||| ||||||||||| Sbjct 553 TCTGTTAGTGGTATAGAGGATGATT 577 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58634236560 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5