BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488218
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13920.1 | Symbols: | GRF zinc finger / Zinc knuckle protei... 952 0.0
> AT5G13920.1 | Symbols: | GRF zinc finger / Zinc knuckle protein
| chr5:4485931-4487433 REVERSE LENGTH=1248
Length=1248
Score = 952 bits (515), Expect = 0.0
Identities = 617/665 (93%), Gaps = 11/665 (2%)
Strand=Plus/Plus
Query 528 AGAATGTCAAGCTTCTGTTAGTGGTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 587
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 585 AGAATGTCAAGATTCTGTTA---GTGCAGAGGATGATTCTACATTAGAAAATTTGGATTC 641
Query 588 CACTGCAATGTCTGTTTCTGATGTACATTTTATTGCTCTGAACCAAGGTATCCCTCTGTT 647
|| | |||||||||||||||||||||| | || ||||||||||||||||||| |||||||
Sbjct 642 CATTTCAATGTCTGTTTCTGATGTACACTCTACTGCTCTGAACCAAGGTATCTCTCTGTT 701
Query 648 TGAACCGTTTTCGATCGAACCTGAAGAGGCATGGAAAAAGACTCCA-CATGGTGATCAGC 706
||| ||| || ||| ||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 702 TGATCCGGTTACGAGCGAACCTGAAGAGCCATGGAAAAAGACT-CAGAATGGTGATCAGC 760
Query 707 CAACAAATAGTGCTCTTTCTAAGTTGAGTCTGGATGAAGCAG-TGAGTGATTTGATCAGA 765
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 761 CAACAAATAGTGCTCTTTCTAAGTTGAGTGTGGATGAAGC-GATGAGTGATTTGATCAGA 819
Query 766 GATACTGTCTCTAGTGGTTCTGCTGTGATACATGGAAGGACAACCCGTGAGCAACCTGGA 825
||||| |||||||||||||||| |||||||||||||||||||| || ||||||||||| |
Sbjct 820 GATACGGTCTCTAGTGGTTCTGTTGTGATACATGGAAGGACAAACCATGAGCAACCTGAA 879
Query 826 ATTGGTGAAGCTGAGTGGTCATTCCCTTACTTGCAGGACCTAATTGATCAGTACAACTCA 885
|||| || |||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 880 ATTGATGGAGCTGAGTGGTCATTCCCTTGCTTGCAGAACCTAATTGATCAGTACAACTCA 939
Query 886 GAGAAGCTTCAATTGGAGAGTATTTCGGGGAAACATGTACAAGTGTTGAGTGAATTTATG 945
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 940 GAGAAGCTTCAATTGGAGAGTATTTCAGGGAAACATGTACAAATGTTGAGTGAATTTATG 999
Query 946 TCTTCGTACAGGCGACTAAGGTTACTTCACGAGAAAACTTGTCACCTCAGGAAAACTTTA 1005
|||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 1000 GCTTCGTACAGGCGACTAAGGTTACTTCATGAGAAAACTAGTCATCTCAGGAAAACTTTA 1059
Query 1006 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGA-GTCTGAGACATTAGAATTTGGAGCAAG 1064
|||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 1060 CTTGAAACAGAGAAGGAGATGGTTTGTTGTGAAG-CTGAGACATTAAAATTTGGAGCAAG 1118
Query 1065 TTGTAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAAAGGATGCAGGAGACTGCAGA 1124
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1119 TTGCAGGGAAGTGGCTGGAGAAATGGCTGAGTCTCAGAAGAGGATGCAGGAAACTGCAGA 1178
Query 1125 -ACAACTAGGGAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGCTCCGAAGAGAA 1183
| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1179 TA-AACTAGGAAAAGAAGTAGAAGTGTTTAAGCAAAATGAGTTTGTTGGTCTAAAGAGAA 1237
Query 1184 GAAGA 1188
|||||
Sbjct 1238 GAAGA 1242
Score = 885 bits (479), Expect = 0.0
Identities = 537/565 (95%), Gaps = 3/565 (1%)
Strand=Plus/Plus
Query 1 ATGCAGACCGGAAATTGCTTCCGATGCCGTCAGGCTGGTCACTGGATCAGCGATTGTCCT 60
|||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 16 ATGCAGACCGGAGATTGCTTCCGATGCCGTCAGGCTGGCCACTGGATCAACGATTGTCCT 75
Query 61 CTCAAATCCAAAACCGATGATGATCCTCCACCGGCGATCCACTGCACTTGCGGTGGAGGT 120
||||||||| | ||| ||||||||||||||||||||||| ||| | ||||| ||||||
Sbjct 76 CTCAAATCCTACACC---GATGATCCTCCACCGGCGATCCAATGCCCATGCGGCGGAGGT 132
Query 121 TTCTGCGAAATCAAGGTCGCGAATACTCGAGAAAATGCCGGAAGGAAGTTCTACAAGTGT 180
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 133 TTCTGTGAAATCAAGGTCGCGAATACTCGAGAAAATCCCGGAAGGAAGTTCTACAAGTGT 192
Query 181 CCAACGGCTCAGAATTGCAAATTCTTCAAATGGTGTGACAAAGTAACCGATGAAGATATC 240
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 193 CCAACGGCTCAGAATTGCTGTTTCTTCAAATGGTGTGACAAAGTAACCGACGAAGATATC 252
Query 241 AGATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 AAATTCCGTCCTGCCTTCACCATCCCGATTTGTTCCTGCGGTGCTGGACCTTGCCGGAGA 312
Query 301 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAGAGGGTTTTGGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 313 GTTAAAGACGTTTCCGGTAGAGCTTACCTGATATGCTGCATCAAAAAGGGATTTGGAGCT 372
Query 361 TGTGGATTCTTCAAATGGGAAGATGTTGAGATGATTCCGAGTTGTGATGTAATGGATGAG 420
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 373 TGTGGATTCTTCAAGTGGGAAGATGTTGAGATGATTCCTAGTTGTGATGTTATGGATGAG 432
Query 421 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTCCAGGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 433 ATTGATTTTTGGGTTGAAGCTGATCAAATTTTGAGTGATGTTGAGAGTAGCTTACAGGCT 492
Query 481 CGTGGTGGCGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CGTGGTGGTGTTATACCGGAAATTGCAAACCAAATGGCATCAGAGAAAGAATGTCAAGCT 552
Query 541 TCTGTTAGTGGTGCAGAGGATGATT 565
|||||||||||| |||||||||||
Sbjct 553 TCTGTTAGTGGTATAGAGGATGATT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5