BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488219
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13930.1 | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene ... 2324 0.0
> AT5G13930.1 | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene
synthase family protein | chr5:4488688-4490264 FORWARD LENGTH=1491
Length=1491
Score = 2324 bits (1258), Expect = 0.0
Identities = 1423/1500 (95%), Gaps = 21/1500 (1%)
Strand=Plus/Plus
Query 1 AAATACACCTAACTTGTTTAGTACAC-A-A-CAACATCAAACTCTAATAAACCCAAGTTG 57
|||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 3 AAATACACCTAACTTGTTTAGTACACAACAGCAACATCAAACTCTAATAAACCCAAGTTG 62
Query 58 GTGTGTAATATAATGGTGATGGCTGCAGGAGCGTCTTCGTTGGATGAGATCAGAAAGGCT 117
|||| || |||||||||||||||| || || ||||| ||||||||||||||| |||||
Sbjct 63 GTGTATACTATAATGGTGATGGCT---GGTGCTTCTTCTTTGGATGAGATCAGACAGGCT 119
Query 118 CAGAGAGCTGATGGACCTGCAGGGATCTTGGCTATTGGCACGGCTAACCCTGAGAACCAT 177
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 120 CAGAGAGCTGATGGACCTGCAGGCATCTTGGCTATTGGCACTGCTAACCCTGAGAACCAT 179
Query 178 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGAATCACCAACAGTGAACACATGACC 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GTGCTTCAGGCGGAGTATCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACC 239
Query 238 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGATGATTCGGAAACGCCACATG 297
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 240 GACCTCAAGGAGAAGTTCAAGCGCATGTGCGACAAGTCGACAATTCGGAAACGTCACATG 299
Query 298 CATCTGACAGAGGACTTCCTCAAGGAAAACCCACACATGTGCGCTTACATGGCTCCTTCT 357
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 300 CATCTGACGGAGGAATTCCTCAAGGAAAACCCACACATGTGTGCTTACATGGCTCCTTCT 359
Query 358 CTAGACACCCGACAGGACATCGTTGTGGTTGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 417
|| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 360 CTGGACACCAGACAGGACATCGTGGTGGTCGAAGTCCCTAAGCTAGGCAAAGAAGCGGCA 419
Query 418 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGAAGGCCATCAAGGAGTGGGGCCAGCCCAAGTCAAAGATCACTCATGTCGTCTTCTGC 479
Query 478 ACTACCTCTGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 537
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTACCTCCGGCGTCGACATGCCTGGTGCTGACTACCAGCTCACCAAGCTTCTTGGTCTC 539
Query 538 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAACAAGGTTGCTTCGCCGGCGGCACTGTC 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 540 CGTCCTTCCGTCAAGCGTCTCATGATGTACCAGCAAGGTTGCTTCGCCGGCGGTACTGTC 599
Query 598 CTCCGTATCGCTAAGGACCTTGCCGAGAACAACCGCGGAGCTCGTGTCCTTGTCGTCTGC 657
||||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||||
Sbjct 600 CTCCGTATCGCTAAGGATCTCGCCGAGAACAATCGTGGAGCACGTGTCCTCGTTGTCTGC 659
Query 658 TCTGAGATCACAGCTGTCACCTTCCGTGGCCCCTCTGACACCCACCTCGACTCCCTCGTC 717
|||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 660 TCTGAGATCACAGCCGTTACCTTCCGTGGTCCCTCTGACACCCACCTTGACTCCCTCGTC 719
Query 718 GGTCAGGCTCTTTTCAGTGACGGCGCTGCCGCACTCATCGTGGGCTCGGACCCTGACACA 777
|||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 720 GGTCAGGCTCTTTTCAGTGATGGCGCCGCCGCACTCATTGTGGGGTCGGACCCTGACACA 779
Query 778 TCTGTCGGAGAGAAACCCATCTTCGAGATGGTGTCCGCCGCCCAGACCATCCTGCCAGAC 837
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct 780 TCTGTCGGAGAGAAACCCATCTTTGAGATGGTGTCTGCCGCTCAGACCATCCTTCCAGAC 839
Query 838 TCTGATGGTGCCATAGACGGACACTTGAGGGAAGTGGGTCTCACCTTCCATCTCCTCAAG 897
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 840 TCTGATGGTGCCATAGACGGACATTTGAGGGAAGTTGGTCTCACCTTCCATCTCCTCAAG 899
Query 898 GATGTCCCCGGCCTCATCTCGAAGAACATTGTTAAGAGTCTAGACGAAGCGTTTAAACCT 957
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 900 GATGTTCCCGGCCTCATCTCCAAGAACATTGTGAAGAGTCTAGACGAAGCGTTTAAACCT 959
Query 958 TTGGGGATTAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGGGGATAAGTGACTGGAACTCCCTCTTCTGGATAGCCCACCCTGGAGGTCCAGCGATC 1019
Query 1018 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTAGACCAGGTGGAGATAAAGCTAGGACTAAAGGAAGAGAAGATGAGGGCGACACGTCAC 1079
Query 1078 GTGTTGAGCGAGTATGGAAACATGTCTAGCGCGTGCGTTCTCTTTATACTAGACGAGATG 1137
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1080 GTGTTGAGCGAGTATGGAAACATGTCGAGCGCGTGCGTTCTCTTCATACTAGACGAGATG 1139
Query 1138 AGGAGGAAGTCAGCCAAGGATGGTGTGGCCACTACAGGAGAAGGGTTGGAGTGGGGTGTC 1197
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 AGGAGGAAGTCAGCTAAGGATGGTGTGGCCACGACAGGAGAAGGGTTGGAGTGGGGTGTC 1199
Query 1198 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTGTTTGGTTTCGGACCAGGTCTCACTGTTGAGACAGTCGTCTTGCACAGCGTTCCTCTC 1259
Query 1258 TAATA-AGAACGCTTTCCTTCTATCTGCCTACCTACACTACGCAAAACTTTAATCCTGTC 1316
||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TAA-ACAGAACGCTTGCCTTCTATCTGCCTACCTAC-CTACGCAAAACTTTAATCCTGTC 1317
Query 1317 TTATGTTTTATATAATATAATC-T-AT--GTTTATGCAATAATTAAGGAAGAATTCATTT 1372
|||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||
Sbjct 1318 TTATGTTTTATATAATATAATCATTATATGTTTACGCAATAATTAAGGAAGAATTCATTT 1377
Query 1373 GATGTGATATGTGATTTGAAATGTGCTGGACAGGTCTATTCGACTATTTTTGTAC-CT-T 1430
||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |
Sbjct 1378 GATGTGATATGTGAT---A--TGTGCTGGACAGGTCTATTCGACTGTTTTTGTACTCTCT 1432
Query 1431 TTGTTTGTGTCTTTTTACAATATTAAATCTACGGGTCTTGAATGACATGAAATCTTTGTT 1490
|| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1433 TT-TTTGTGTCTTTTTACAATATTAAATCTATGGGTCTTGAATGACATCAAATCTTTGTT 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5