BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488222 Length=2177 Score E Sequences producing significant alignments: (Bits) Value AT5G13960.1 | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4... 3365 0.0 > AT5G13960.1 | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4 | chr5:4501447-4506188 FORWARD LENGTH=2212 Length=2212 Score = 3365 bits (1822), Expect = 0.0 Identities = 2067/2185 (95%), Gaps = 17/2185 (1%) Strand=Plus/Plus Query 1 TCTTCGTCGTCATCACAGTTTCAATCTCTCGCTGCTT-G-GT-CTTCCCTCTCTTCTTCT 57 ||||||||||| |||||||||||||||| |||||||| | | ||||| ||||||||||| Sbjct 36 TCTTCGTCGTCTTCACAGTTTCAATCTCGCGCTGCTTAGTCTCCTTCCGTCTCTTCTTCT 95 Query 58 CCGCTAGCTATTCCTGGGGAAAAAGAGTGATTGATGGCTGGAAAAAGGAAACGAGCTAAT 117 ||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 96 CCGCTAGCTTTTCCAGGGGAAAAAGAGTGATCGATGGCTGGAAAAAGGAAACGAGCTAAT 155 Query 118 GCTCCTGACCAAACAGAGCGAAGATTGAGTGTTCGGGTTCAGGAAGTGAGACA-AAAGGC 176 ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| || Sbjct 156 GCTCCTGACCAAACAGAGCGAAGATCGAGTGTTCGGGTTCAGAAAGTGAGACAGAAA-GC 214 Query 177 GCTAGATGAGAAGGAGCGTTTAGTACGGGAGAGGGTTAAACTCCTCAGTGACAAAAAGAG 236 | |||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||| Sbjct 215 GTTAGATGAGAAGGCGCGTTTAGTACAGGAGAGGGTTAAGCTCCTCAGTGACAGAAAGAG 274 Query 237 TGAACTTTTTGTCGATGACACTGATTTACATGAGAAGGAAGAGGAGAATGTCGATGGGAG 296 |||| ||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 275 TGAAATTTGTGTCGATGACACTGAGTTACATGAGAAAGAAGAGGAAAATGTCGATGGGAG 334 Query 297 CCCTAAACGAAGAAGCCCTCCAAAGCTATCAGCAATGCAGAAAGGAAAGCAGAAATTGAG 356 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 335 CCCTAAACGAAGAAGCCCTCCAAAGCTAACCGCAATGCAGAAAGGAAAGCAGAAATTGAG 394 Query 357 TGTTTCTCCGAATGGCAAGGACGTGAACTTGG-ACGCTCATCTCAAAGTCACAAAGTGTC 415 |||||||| |||||| |||||||||||||||| || ||||||||||||| |||||||||| Sbjct 395 TGTTTCTCTGAATGGTAAGGACGTGAACTTGGAAC-CTCATCTCAAAGTGACAAAGTGTC 453 Query 416 TGAGGGTT-TTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGACCTGAT 474 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 454 TGA-GGTTATTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGGCCTGAT 512 Query 475 TTGAAGGGTATAACTGAGATGATTAAAGCCAAGGCGATATTGTACCCAAGAAAATTAATT 534 ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||| Sbjct 513 TTGAAGGGTGTAACTGAGATGATAAAAGCTAAGGCGATATTGTACCCAAGAAAAATAATC 572 Query 535 GGTGACCTTCCAGGTATTGACGTTGGACACCGAtttttttCAAGAGCTGAAATGTGTGCT 594 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 573 GGTGACCTTCCAGGTATAGACGTTGGACACCGTTTTTTTTCAAGAGCTGAAATGTGTGCT 632 Query 595 GTAGGCTTCCATAACCATTGGCTAAATGGGATCGATTATATGGGAATGGAATACGAAAAA 654 ||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||| Sbjct 633 GTAGGATTCCATAACCATTGGCTAAATGGCATTGATTATATGTCAATGGAATACGAAAAA 692 Query 655 GAGTATAGTAACTACAAGTTTCCGCTTGCTGTTTCTATCGTTATGTCGGGCCAGTACGAG 714 ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 693 GAGTATAGTAACTACAAATTACCGCTTGCTGTTTCTATTGTTATGTCGGGCCAGTACGAG 752 Query 715 GATGATCTAGACAATGCAGATACGGTGACTTACACTGGACAGGGAGGGCACAACTTAACT 774 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 753 GATGATCTAGACAATGCAGATACAGTGACTTACACTGGACAGGGAGGGCATAACTTAACT 812 Query 775 GGTAATAAACGCCAGATTAAGGATCAACTCTTACAACGAGGGAATTTGGCCCTAAAGAAC 834 ||||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||| || Sbjct 813 GGTAATAAACGTCAGATAAAGGATCAACTTTTAGAACGAGGGAATTTGGCGCTAAAGCAC 872 Query 835 TGCTGCGAATATAACGTACCTGTCAGAGTAACTCGTGGTCATGATTGCATAAGTAGCTAT 894 |||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||| Sbjct 873 TGCTGCGAATATAATGTGCCTGTCAGAGTAACTCGTGGTCACAATTGCAAAAGTAGCTAT 932 Query 895 ACCAAAAGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 954 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 ACCAAACGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 992 Query 955 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1052 Query 1015 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAAAGTCTACTTCAGAAATT 1074 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1053 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAACGAGTACTTCAGAAATT 1112 Query 1075 GAGGGTTTGGTATGCGAAGACATCTCCGGAGGGCTAGAATTTAAGGGTATTCCAGCCACA 1134 |||||||||||||| || |||||||||||||||||||||||||||||||| || ||||| Sbjct 1113 GAGGGTTTGGTATGTGAGGACATCTCCGGAGGGCTAGAATTTAAGGGTATCCCCGCCACT 1172 Query 1135 AATCGTGTTGATGATTCACCAGTTTCACCATCATCAGGTTTCACATACATCAAATCTTTG 1194 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1173 AATCGTGTTGATGATTCACCAGTTTCACCAACATCTGGTTTCACATACATCAAATCTTTG 1232 Query 1195 ATTATTGGGCCTAATGTCAAAATCCCAAAGAGTTCAACTGGGTGTAACTGCCAAGGCAGC 1254 ||||||| ||||||||||| ||| |||||||||||||||||||||||||||| ||||||| Sbjct 1233 ATTATTGAGCCTAATGTCATAATTCCAAAGAGTTCAACTGGGTGTAACTGCCGAGGCAGC 1292 Query 1255 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGAAACTTTCCATATGTT 1314 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1293 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGTAACTTTCCATATGTT 1352 Query 1315 GACCTTAATGATGGCAGATTAATTGAGCCTCGAGATGTTGTATTTGAATGTGGTCCACAC 1374 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1353 GACCTTAATGATGGCAGATTAATTGAGTCTCGAGATGTTGTATTTGAATGTGGTCCTCAC 1412 Query 1375 TGTGGGTGTGGGCCAAAATGTGTTAACCGAACTTCTCAGAAGCGTCTAAGATTTAATCTT 1434 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1413 TGTGGGTGTGGGCCAAAATGTGTCAACCGAACTTCTCAGAAGCGTCTAAGATTCAATCTT 1472 Query 1435 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGACTACATACCAGCT 1494 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1473 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGAGTACATACCAGCT 1532 Query 1495 GGTTCACCAGTATGTGAGTACATAGGAGTCCTCAGAAGAACTGCTGATGTGGATACTATC 1554 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1533 GGTTCACCAGTATGTGAGTACATAGGAGTTGTCAGGAGAACTGCTGATGTGGATACTATC 1592 Query 1555 TCTGACAATGAATACATATTCGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1614 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1593 TCTGACAATGAATACATATTTGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1652 Query 1615 AGACAGAGAAGACTAAGGGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1674 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1653 AGACAGAGAAGACTAAGAGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1712 Query 1675 GAAGATGAGAATGTACCAGAGTTCTGTATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1734 ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1713 GAAGATGAGAATGCGCCAGAGTTCTGCATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1772 Query 1735 TTTATAAATCACAGTTGTGAACCAAACCTGTTCGTTCAGTGTGTCCTGAGTTCTCACCAG 1794 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 1773 TTTATAAATCACAGTTGTGAACCAAACCTATTTGTTCAGTGCGTCCTGAGTTCTCACCAG 1832 Query 1795 GATCTAAGGCTTGCCCGCGTGGTTCTTTTTGCAGCTGACAACATTTCACCACTGCAGGAG 1854 ||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||| Sbjct 1833 GATATAAGGCTTGCCCGTGTGGTTCTTTTCGCAGCTGACAACATTTCCCCAATGCAGGAG 1892 Query 1855 CTAACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGGCCGGATGGGAAGGTGAAG 1914 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1893 CTCACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGACCGGATGGGAAGGTGAAG 1952 Query 1915 CAGCTCACTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTATACTAACAA-GGCTA 1973 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 1953 CAGCTCGCTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTTTACTAACAAAGGCTA 2012 Query 1974 TTGGT-AAGCTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2032 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2013 TTGGTGAA-CTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2071 Query 2033 CCAAGTGGAAGAACCCTTAACATCTTATTTGAGGGACTTTAGCATCTTCTGCAGCGTACA 2092 |||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| Sbjct 2072 CCAAGTGGAAGAACCCTTCACATTTTATTTAAGGGACTTTAGCTTCTTCTGCAGCGTAC- 2130 Query 2093 ATTAGTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAACCCTATTGTTGCCATTGGCATCT 2152 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2131 ----GTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAATTCTATTGTTGCCATTGGCATCT 2186 Query 2153 TATCTATCGGGTCAACAGTATTAAT 2177 ||||||||||||||||| ||||||| Sbjct 2187 TATCTATCGGGTCAACAATATTAAT 2211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107981372295 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5