BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488222
Length=2177
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13960.1 | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4... 3365 0.0
> AT5G13960.1 | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog
4 | chr5:4501447-4506188 FORWARD LENGTH=2212
Length=2212
Score = 3365 bits (1822), Expect = 0.0
Identities = 2067/2185 (95%), Gaps = 17/2185 (1%)
Strand=Plus/Plus
Query 1 TCTTCGTCGTCATCACAGTTTCAATCTCTCGCTGCTT-G-GT-CTTCCCTCTCTTCTTCT 57
||||||||||| |||||||||||||||| |||||||| | | ||||| |||||||||||
Sbjct 36 TCTTCGTCGTCTTCACAGTTTCAATCTCGCGCTGCTTAGTCTCCTTCCGTCTCTTCTTCT 95
Query 58 CCGCTAGCTATTCCTGGGGAAAAAGAGTGATTGATGGCTGGAAAAAGGAAACGAGCTAAT 117
||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 96 CCGCTAGCTTTTCCAGGGGAAAAAGAGTGATCGATGGCTGGAAAAAGGAAACGAGCTAAT 155
Query 118 GCTCCTGACCAAACAGAGCGAAGATTGAGTGTTCGGGTTCAGGAAGTGAGACA-AAAGGC 176
||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||
Sbjct 156 GCTCCTGACCAAACAGAGCGAAGATCGAGTGTTCGGGTTCAGAAAGTGAGACAGAAA-GC 214
Query 177 GCTAGATGAGAAGGAGCGTTTAGTACGGGAGAGGGTTAAACTCCTCAGTGACAAAAAGAG 236
| |||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 215 GTTAGATGAGAAGGCGCGTTTAGTACAGGAGAGGGTTAAGCTCCTCAGTGACAGAAAGAG 274
Query 237 TGAACTTTTTGTCGATGACACTGATTTACATGAGAAGGAAGAGGAGAATGTCGATGGGAG 296
|||| ||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 275 TGAAATTTGTGTCGATGACACTGAGTTACATGAGAAAGAAGAGGAAAATGTCGATGGGAG 334
Query 297 CCCTAAACGAAGAAGCCCTCCAAAGCTATCAGCAATGCAGAAAGGAAAGCAGAAATTGAG 356
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 335 CCCTAAACGAAGAAGCCCTCCAAAGCTAACCGCAATGCAGAAAGGAAAGCAGAAATTGAG 394
Query 357 TGTTTCTCCGAATGGCAAGGACGTGAACTTGG-ACGCTCATCTCAAAGTCACAAAGTGTC 415
|||||||| |||||| |||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 395 TGTTTCTCTGAATGGTAAGGACGTGAACTTGGAAC-CTCATCTCAAAGTGACAAAGTGTC 453
Query 416 TGAGGGTT-TTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGACCTGAT 474
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 454 TGA-GGTTATTTAACAAGCAATATCTCCTCTGTGTCCAGGCTAAGTTGAGCAGGCCTGAT 512
Query 475 TTGAAGGGTATAACTGAGATGATTAAAGCCAAGGCGATATTGTACCCAAGAAAATTAATT 534
||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct 513 TTGAAGGGTGTAACTGAGATGATAAAAGCTAAGGCGATATTGTACCCAAGAAAAATAATC 572
Query 535 GGTGACCTTCCAGGTATTGACGTTGGACACCGAtttttttCAAGAGCTGAAATGTGTGCT 594
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 573 GGTGACCTTCCAGGTATAGACGTTGGACACCGTTTTTTTTCAAGAGCTGAAATGTGTGCT 632
Query 595 GTAGGCTTCCATAACCATTGGCTAAATGGGATCGATTATATGGGAATGGAATACGAAAAA 654
||||| ||||||||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 633 GTAGGATTCCATAACCATTGGCTAAATGGCATTGATTATATGTCAATGGAATACGAAAAA 692
Query 655 GAGTATAGTAACTACAAGTTTCCGCTTGCTGTTTCTATCGTTATGTCGGGCCAGTACGAG 714
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 693 GAGTATAGTAACTACAAATTACCGCTTGCTGTTTCTATTGTTATGTCGGGCCAGTACGAG 752
Query 715 GATGATCTAGACAATGCAGATACGGTGACTTACACTGGACAGGGAGGGCACAACTTAACT 774
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 753 GATGATCTAGACAATGCAGATACAGTGACTTACACTGGACAGGGAGGGCATAACTTAACT 812
Query 775 GGTAATAAACGCCAGATTAAGGATCAACTCTTACAACGAGGGAATTTGGCCCTAAAGAAC 834
||||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||| ||
Sbjct 813 GGTAATAAACGTCAGATAAAGGATCAACTTTTAGAACGAGGGAATTTGGCGCTAAAGCAC 872
Query 835 TGCTGCGAATATAACGTACCTGTCAGAGTAACTCGTGGTCATGATTGCATAAGTAGCTAT 894
|||||||||||||| || ||||||||||||||||||||||| |||||| ||||||||||
Sbjct 873 TGCTGCGAATATAATGTGCCTGTCAGAGTAACTCGTGGTCACAATTGCAAAAGTAGCTAT 932
Query 895 ACCAAAAGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 954
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 ACCAAACGAGTATACACTTATGATGGACTGTACAAGGTTGAAAAGTTCTGGGCACAAAAG 992
Query 955 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 GGCGTTTCAGGATTTACAGTGTATAAGTACCGACTGAAACGATTGGAGGGGCAACCAGAA 1052
Query 1015 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAAAGTCTACTTCAGAAATT 1074
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1053 CTAACTACTGATCAGGTCAACTTTGTTGCTGGACGCATACCAACGAGTACTTCAGAAATT 1112
Query 1075 GAGGGTTTGGTATGCGAAGACATCTCCGGAGGGCTAGAATTTAAGGGTATTCCAGCCACA 1134
|||||||||||||| || |||||||||||||||||||||||||||||||| || |||||
Sbjct 1113 GAGGGTTTGGTATGTGAGGACATCTCCGGAGGGCTAGAATTTAAGGGTATCCCCGCCACT 1172
Query 1135 AATCGTGTTGATGATTCACCAGTTTCACCATCATCAGGTTTCACATACATCAAATCTTTG 1194
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1173 AATCGTGTTGATGATTCACCAGTTTCACCAACATCTGGTTTCACATACATCAAATCTTTG 1232
Query 1195 ATTATTGGGCCTAATGTCAAAATCCCAAAGAGTTCAACTGGGTGTAACTGCCAAGGCAGC 1254
||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||
Sbjct 1233 ATTATTGAGCCTAATGTCATAATTCCAAAGAGTTCAACTGGGTGTAACTGCCGAGGCAGC 1292
Query 1255 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGAAACTTTCCATATGTT 1314
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1293 TGCACTGACTCAAAGAAATGTGCATGTGCTAAGCTTAATGGGGGTAACTTTCCATATGTT 1352
Query 1315 GACCTTAATGATGGCAGATTAATTGAGCCTCGAGATGTTGTATTTGAATGTGGTCCACAC 1374
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1353 GACCTTAATGATGGCAGATTAATTGAGTCTCGAGATGTTGTATTTGAATGTGGTCCTCAC 1412
Query 1375 TGTGGGTGTGGGCCAAAATGTGTTAACCGAACTTCTCAGAAGCGTCTAAGATTTAATCTT 1434
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1413 TGTGGGTGTGGGCCAAAATGTGTCAACCGAACTTCTCAGAAGCGTCTAAGATTCAATCTT 1472
Query 1435 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGACTACATACCAGCT 1494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1473 GAGGTTTTCCGCTCTGCAAAGAAGGGTTGGGCAGTTAGATCATGGGAGTACATACCAGCT 1532
Query 1495 GGTTCACCAGTATGTGAGTACATAGGAGTCCTCAGAAGAACTGCTGATGTGGATACTATC 1554
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1533 GGTTCACCAGTATGTGAGTACATAGGAGTTGTCAGGAGAACTGCTGATGTGGATACTATC 1592
Query 1555 TCTGACAATGAATACATATTCGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1614
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TCTGACAATGAATACATATTTGAGATTGACTGCCAACAGACAATGCAAGGTCTTGGTGGA 1652
Query 1615 AGACAGAGAAGACTAAGGGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1674
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 AGACAGAGAAGACTAAGAGATGTTGCTGTACCAATGAATAATGGAGTCAGTCAGAGCAGT 1712
Query 1675 GAAGATGAGAATGTACCAGAGTTCTGTATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1734
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1713 GAAGATGAGAATGCGCCAGAGTTCTGCATTGATGCTGGTTCAACAGGAAACTTTGCTAGG 1772
Query 1735 TTTATAAATCACAGTTGTGAACCAAACCTGTTCGTTCAGTGTGTCCTGAGTTCTCACCAG 1794
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1773 TTTATAAATCACAGTTGTGAACCAAACCTATTTGTTCAGTGCGTCCTGAGTTCTCACCAG 1832
Query 1795 GATCTAAGGCTTGCCCGCGTGGTTCTTTTTGCAGCTGACAACATTTCACCACTGCAGGAG 1854
||| ||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1833 GATATAAGGCTTGCCCGTGTGGTTCTTTTCGCAGCTGACAACATTTCCCCAATGCAGGAG 1892
Query 1855 CTAACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGGCCGGATGGGAAGGTGAAG 1914
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1893 CTCACTTACGACTATGGATATGCGCTTGATAGCGTTCATGGACCGGATGGGAAGGTGAAG 1952
Query 1915 CAGCTCACTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTATACTAACAA-GGCTA 1973
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1953 CAGCTCGCTTGCTACTGTGGAGCGCTAAATTGTAGGAAACGCCTTTACTAACAAAGGCTA 2012
Query 1974 TTGGT-AAGCTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2032
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 TTGGTGAA-CTTATTTTTTGGTCACTCTATTTTGGGGAGTACATAGATAGCAACTATCTC 2071
Query 2033 CCAAGTGGAAGAACCCTTAACATCTTATTTGAGGGACTTTAGCATCTTCTGCAGCGTACA 2092
|||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||
Sbjct 2072 CCAAGTGGAAGAACCCTTCACATTTTATTTAAGGGACTTTAGCTTCTTCTGCAGCGTAC- 2130
Query 2093 ATTAGTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAACCCTATTGTTGCCATTGGCATCT 2152
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2131 ----GTGCTGCCTTTTTCGGCATTGTTGTTTCCTGAATTCTATTGTTGCCATTGGCATCT 2186
Query 2153 TATCTATCGGGTCAACAGTATTAAT 2177
||||||||||||||||| |||||||
Sbjct 2187 TATCTATCGGGTCAACAATATTAAT 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107981372295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5