BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488223
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1829 0.0
> AT5G13970.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G13310.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:4506232-4507842 REVERSE LENGTH=1404
Length=1404
Score = 1829 bits (990), Expect = 0.0
Identities = 1264/1389 (91%), Gaps = 47/1389 (3%)
Strand=Plus/Plus
Query 1 AAATTCGTTCTTGCAATGGATGA-ATCTTTCAGAGTAAGGATCGACAAGGTTTTTGGATC 59
||||||||| ||||||||||||| | ||||||||| ||||| |||||||||||||||||
Sbjct 24 AAATTCGTTTTTGCAATGGATGAGA-GTTTCAGAGTGAGGATAGACAAGGTTTTTGGATC 82
Query 60 TCTTGCATCATCATCTGCGTCTTCAGCACCTGTGAGCTCTCTCTGGTGTCTCGCGGAAGA 119
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 TCTTGCATCATCTTCTACGTCTTCAGCACCTGTGAGCTCTCTCTGGTGTCTCGCGGAAGA 142
Query 120 TGAGATTGATAGCAACCAACGAAGCGGAGAAAAGGAA--AT-T---TC--TG-A-A---T 166
||||| ||| | |||||||| ||||||||||||||| | | || || | | |
Sbjct 143 CGAGATCGATGGAAACCAACGGAGCGGAGAAAAGGAACTTTCTGAATCATTGAACAGCTT 202
Query 167 C-C--------G--AGCAGGAGAATGAAGT-AGAAGATTTGAACGTAGATGAGGAAAAAG 214
| | | |||||||| ||||| | ||| ||||||| | |||||||||||||||
Sbjct 203 CTCGGATAATGGAAAGCAGGAGCATGAA-TCAGATGATTTGAGCATAGATGAGGAAAAAG 261
Query 215 GAAAGTGTAGTGAATTGCAGAAGCCGAGCGATTACGATGACGAAGAGTGGGAGATCAAAA 274
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 262 GAAGGTCTAGTGAATTGCAGAAGCCGAGTGATTACGATGACGAAGAGTGGGAGATCAAAA 321
Query 275 ACTCCATTGGGATGGACTCCACTCTTGATATGGAGGAAGAAG-AAGATGATAATGACAAA 333
|||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 322 ACTCAATTGGGATGGACTCTACTCTTGATATGGAGGAAG-AGCTAGATGATAATGACAAA 380
Query 334 GTGGCTTTAGGTGAAAAAGTGTACTCTTGCATGAAGGATGTGAAT---GACTATGAGACT 390
||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 381 GTGGCATTAGGTGAAAAAGTGTACTGTTGCATGAAGGATGTGAATGACGACTATGAGACT 440
Query 391 GAAGCAGACGAGTGGGTGGAGCTTCCAGCTTCTTTCAATGAAAGAGAGAAGGACCCTCGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAAGCAGACGAGTGGGTGGAGCTTCCAGCTTCTTTCAATGAAAGAGAGAAGGACCCTCGA 500
Query 451 GCTAATCTCATTGCTGCAAAGCTTAGGCTTAAAGAAGACGCTGAAGCTGTTAACAAGTTG 510
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 501 GCTAATCTCATAGCAGCAAAGCTTAGGCTTAAAGAGGACGCAGAAGCTGTTAACAAGTTG 560
Query 511 AATTCTTTACATGTCTCTGAGGAACTTCAGGACAATCTGTCCATGTCGACGGAAAACGAG 570
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 561 AATTCTTTACATGTCTCTGAGGAACTTCAGGATAATCTGTCCATGTCGACGGAAAACGAG 620
Query 571 AAACCTTTGGTGGTGTCTGAAGATAACTTGCTGGGGACTTGCAAGGAGTCACATGTTGGC 630
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 621 AAACCTTTTGTGGTGTCTGAAGATAACTTGCTGGGGGCTTTCAAGGAGTCACATGTTGGC 680
Query 631 TCTTCAGATGATAATGG-CTTGAAACCGATATTGAAGAGGAAAGAAAACCAGGCTGATGA 689
||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 681 TCTTCAGATGAGAATGGGCT-GAAACCGATATTGAAGAGGAGAGAAAACCAGGCTGATGA 739
Query 690 TTCTAAGTTGC-AGAAGCGTGTTCGGTTTAGCTCTGATGTCAAAGAT-GGTAACTTGACG 747
|||||||| || | ||||||||| ||||||| ||||||||||||||| || | ||||||
Sbjct 740 TTCTAAGTCGCCA-AAGCGTGTTAGGTTTAGTTCTGATGTCAAAGATAGG-ACCTTGACT 797
Query 748 GAAGGTGACAAAGATTCTGTGATGGAGACTAGTTCCCCTGACGAACATAAAGTAGAGGCA 807
||||||||||| ||||||||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct 798 GAAGGTGACAACGATTCTGTGATGGAGGCAAGTTCCCCTAACGAAGATAAAGTAGAGGCA 857
Query 808 GACTATCCGATTGGGAGTCCTGATTATATGCGGAACCCATCAAAATACACTCGATATACA 867
| |||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 858 GTCTATCCGACTGGGATTCCAGATTATATGCGGAACCCATCAAAATACACTCGATATACA 917
Query 868 TTCGATTCAGGTGAGGTTGATGAAGAATCCAACCGGAAAGCATACATGGACTTTCTCAAC 927
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 918 TTCGAGTCAGGTGAGGTTGATGAAGAATCCAACAGGAAAGCATACATGGACTTTCTCAAC 977
Query 928 ATGATTAGGAGGAAAGATGAG-CCTCTTGTAGACCCTCTGGTAGAGCTTCCAAGATCAGT 986
||||||||||| ||||| ||| || ||||||||||||||| | |||||||||||||||||
Sbjct 978 ATGATTAGGAGCAAAGACGAGTCC-CTTGTAGACCCTCTGATGGAGCTTCCAAGATCAGT 1036
Query 987 GGCTTTTGTACCAAAGAAAAAACCAATGGCTGAAAGTAAAGTAGAAAATATAGAGAAGGA 1046
|||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1037 GGCTTTCGTACCAAAGAGAAAACCAATGGCTGAGAGTAAAGTAGAAAATATAGACAAGGA 1096
Query 1047 TTGTGAGGGAAGAAGAGTTGCAATAGCTGTTGATACCATAGAAGACTGCACCATATCTGC 1106
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1097 TTGTGAGGGAAGAAGAGTTGCAATAGCTGTTGATACTATAGAAGACTGCACCATTTCTGC 1156
Query 1107 TATGGAAGAAGATGAACCAGAAACAGCTCCACATGTCACAAAAAGACCCGGCCGACAGTA 1166
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1157 TATGGAAGAAGATGAACCAGAAACAGCTCAACATGTCACAAAAAGACCTGGCCGACAGTA 1216
Query 1167 TCGAGCCAGAGCTAAGGAAGATCAAGAGGAATGTTGAAGATCAACAAACTT-GC--G--G 1221
||| |||||||| |||||||||| ||||||||||||||||||| ||| ||| || | |
Sbjct 1217 TCGTGCCAGAGCCAAGGAAGATCCAGAGGAATGTTGAAGATCATCAACCTTAGCTTGCTG 1276
Query 1222 ATTTGTTACTTTTTCTTTAAATTTCTTGAATGTGGCAGTTGAATAGGTATTGGATGATAA 1281
||||||||| ||||||||| |||||||||||||| | |||| |||||||| |||||| |
Sbjct 1277 ATTTGTTACGTTTTCTTTATGTTTCTTGAATGTGGTATTTGA-TAGGTATTTGATGATTA 1335
Query 1282 AGAAATCAAATTTGCTTCGACAAATGATATGTTACGTCTACTGTATCTAATATCTATCAT 1341
|||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1336 AGAAATCAAATTTGTTTTGACAAACGATATGCTACGTCTACTGTATCTAATATCTATCAT 1395
Query 1342 AAGCCAGTC 1350
|||||||||
Sbjct 1396 AAGCCAGTC 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5