BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488227
Length=2332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13990.1 | Symbols: ATEXO70C2, EXO70C2 | exocyst subunit exo... 3807 0.0
> AT5G13990.1 | Symbols: ATEXO70C2, EXO70C2 | exocyst subunit exo70
family protein C2 | chr5:4514568-4516892 REVERSE LENGTH=2325
Length=2325
Score = 3807 bits (2061), Expect = 0.0
Identities = 2247/2336 (96%), Gaps = 15/2336 (1%)
Strand=Plus/Plus
Query 1 AATCGCTTCTCTAACCACAAATCCTAAAAGTCTAAACGAAAACAGAACACATGAATCTCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCGCCTCTCTAACCACAAATCCTAAAAGTCTAAACGAAAACAGAACACATGAATCTCT 60
Query 61 CCTTCCTCTGCATCTCAATTCCACTTCGCCATTTTTAAAGCTTTTTACGTAAATAATAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTTCCTCTGCATCTCAATTCCACTTCGCCATTTTTAAAGCTTTTTACGTAAATAATAAG 120
Query 121 AAACGATGGAGAAGAACAACGACAAGGATCCTGATCATGATGACAAATCCAAGGAAGATG 180
|||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 121 AAACCATGGAGAAG---AACGACAAGGACCCTGATCATGATGACAAATCCAAGGGAGAT- 176
Query 181 AGAAGAAAGGCGACGTCGTTTCTGATGCTCATCTCTCAGATGATGTG---CATCAGGATG 237
| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||
Sbjct 177 -G-AGAAAGGCGACGTCGTTTCGGATGCTCATCCCTCAGATGATGCGCATCATCAGGATG 234
Query 238 GTAGCAATAATAAAGAGAATGTAGATGTTGTTGGTAATGCGGAGACAGATCATCAAGATC 297
||| | | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTATC---AGTAACGAAAATGTAGATGTTGTTGGTAATGCGGAGACAGATCATCAAGATC 291
Query 298 CAGGGGATGACAATGTCGACAAGGTTTCACAAGGAGAAGAAGCACCCGAGATTCGTCAAA 357
|||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 292 CAGGAGATAACAATGTCGACAAGGTTTCACAAGGAGAAGAAGCACCAGAGATTCGTCAAA 351
Query 358 CCTTGGAGTCTTTGTCTGAAGAACTCGATCAGTTTCTCCCGACTCTTTCCCTTCACATGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTTGGAGTCTTTGTCTGAAGAACTCGATCAGTTTCTCCCGACTCTTTCCCTTCACATGG 411
Query 418 AGGAGCACAAAGATTGCACCGAGGAGAAAGGAGAGGATGGTTATTTTCAGATCCCACAGT 477
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 AGGAGCACAAAGATAGCACCGAGGAGAAAGGAGAGGATGGTTACTTTCAGATCCCACAGT 471
Query 478 TTGTTGGGAAATTCTTGGATCTTTTTGAGGAAAAACTCTCCAAATATGACTCTGGTGAGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTGTTGGGAAATTCTTGGATCTTTTTGAGGAAAAACTCTCCAAATATGACTCTGGTGAGC 531
Query 538 CTAAGACGGTGTGGTATCAAGATCCCGAAGAGGTGTCTTCGCTTTTAGAGGCAGTGGACC 597
||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 532 CTAAGACTGTGTGGTACCAAGATCCTGAAGAGGTGTCTTCGCTTTTGGAGGCAGTGGATC 591
Query 598 GTGTCTCAAAGCTTATGGTGCTATTGCTCAACACCAAGTCTTGTTTGGACCATCATGAGT 657
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 592 GTGTCTCAAAGCTTATGGGGCTATTGCTCAACACCAAGTCCTGTTTGGACCATCATGAGT 651
Query 658 CCTTGATCAACCATGCGGGATCCATCCAGCAGCGCGCAATGGCTTTCTTGGAAGACGAAT 717
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 652 CCTTGATCAACCATGCGGGATCTATTCAGCAGCGTGCAATGGCTTTCTTGGAAGACGAAT 711
Query 718 TCCGCATCATTTTAGAAGAATCTGTGACCAAAGAGTCTGTGGTTGTCACCGATGACAGCA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TCCGCATCATTTTAGAAGAATCTGTGACCAAAGAGTCTGTGGTTGTCACCGATGACAGCA 771
Query 778 ACAGCCAGAGGAGGAGCACTGCCGATCAGCAAGACCACCAGAATGATGTGGTGGTCTCAC 837
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 772 ACAGCCAGAGGAGGAGCACTGCCGATCAGCAAGACCACCAGAACGATGTGGTGGTCTCAC 831
Query 838 AAGATCAAGACCAGATGCTCGTTCCCGAATGCGGTGATCAGGAGATCGAATATCCC-GGT 896
|||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct 832 AAGACCACGACCAGATGCTCGTTCCGGAATGCGGTGATCAGGAGATTGAATA-CCCTGGT 890
Query 897 TACCCGGAGGATGTGGTTGTGGTGCTGAGGAAAATAGCGGAGAAGATGAAAGCAGGAGGG 956
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 891 TACCCTGAGGATGTGGTTGTGGTGCTGAGGAAAATAGCGGAAAAGATGAAAGCAGGAGGG 950
Query 957 TATGGATGGGAATGTAGAGAGGTTTATTTGGTGGGGAGGAGGAATATCTTGATGCGCACT 1016
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 951 TATGGATGGGAATGTAGAGAGGTTTATTTGGTTGGGAGGAGGAACATCTTGATGCGCACT 1010
Query 1017 TTAAAACAAGATTGTGAGTTTGAGAAAGTTAGCATCGACGAAGTGCAGAAAATGAGCTGG 1076
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1011 TTGAAACAAGATTGTGAGTTTGAGAAAGTTAGCATCGACGAGGTGCAGAAAATGAGCTGG 1070
Query 1077 GACACGCTTGAGAGAGAGATCCCTATTTGGAACAAGACTTTCAAGGACTGCTCTTCTCTC 1136
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GACACGCTCGAGAGAGAGATCCCTATTTGGAACAAGACTTTCAAGGACTGCTCTTCTCTC 1130
Query 1137 TTCTTCCCTGGTGAGCTAAAACTCGCAGAGAGGATATTCCCAGGGGACGAGGGGAGCTTA 1196
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1131 TTCTTCCCTGGTGAGCTAAAACTTGCAGAGAGGATATTCCCAGGGGACGAGGGGAACTTA 1190
Query 1197 TTCTGTATTGTCACACACGGTCTGGCCATCCAGTTCTTGGGTTTCGCAGAGGCCGTGGCC 1256
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1191 TTCTGTATTGTCACACACGGTCTGGCCATCCAGTTCTTAGGTTTCGCAGAGGCCGTAGCC 1250
Query 1257 ATGACAAGGCGCTCCACTGAAAAGCTCTTCAAGATCCTCGACATCTATGAGACTCTGCGG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 ATGACAAGGCGCTCCACTGAAAAGCTCTTCAAGATCCTCGACATCTATGAGACTCTGCGG 1310
Query 1317 GACAGTTTTCCGGCCATGGAGGAGCTGTTTCCGGAGGAGCTCCGGGGCGAGCTGAGGAAC 1376
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1311 GATAGTTTTCCGGCCATGGAGGAGCTGTTTCCGGAGGAACTCCGGAGCGAGCTGAGGAAC 1370
Query 1377 GAGGTGACCAGTGCTCGTTCCCGACTTGGAGAGACTGCGATTCACATTTTCTGTGATCTG 1436
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GAGGTGACCAGTGCTCGCTCCCGACTTGGAGAGACTGCGATTCACATTTTCTGTGATCTG 1430
Query 1437 GAGCACTCCATCAAATCAGATTCAAGCAAGACCCCGGTGCCAGGAGGGGCGGTGCATCCG 1496
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1431 GAGCACTCCATCAAATCAGATTCAAGCAAGACCCCTGTGCCAGGAGGGGCAGTGCATCCA 1490
Query 1497 TTGACGAGGTACACCATGAACTACCTCAAGTACTCGTGCGAATACAAAGACACGCTGGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1491 TTGACGAGGTACACCATGAACTACCTCAAGTACTCGTGCGAATACAAGGACACATTGGAA 1550
Query 1557 CAAGTGTTCAAGAGTCACTCGAAGTTGGAGCGAGAGGAGGAGGAACCTGTGGAGAGCGGA 1616
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1551 CAAGTGTTCAAGAGTCACTCGAAGATGGAGCGAGAGGAGGAGGAACCTGTGGAGAGCGGA 1610
Query 1617 AACTCGGCCTTCGCAAGCCAGCTGATGAGGATAATGGAGCTACTTGACGGGAACCTGGAG 1676
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1611 AACTCGGCCTTCGCAAGCCAGCTGATGAGGATAATGGAGCTACTCGACGGAAACCTGGAG 1670
Query 1677 ACAAAGTCAAAACAGTACAAAGACATACCACTGAGCTGCATCTTCATGATGAACAACGGG 1736
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1671 ACAAAGTCAAAACAGTACAAAGACATACCATTGAGCTGCATCTTCATGATGAACAACGGG 1730
Query 1737 AGATACATAGTGCAGAAGATCAAAGGATCAGCAGAGATACACGAGGTGATGGGTGACACA 1796
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1731 AGATACATAGTGCAGAAGATCAAAGGATCGGCGGAGATACACGAGGTGATGGGTGACACA 1790
Query 1797 TGGTGCAGGAGGAGGTCGTCAGAGCTTAGGAACTATCACAAAAACTACCAGAGGGAGACG 1856
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1791 TGGTGCAGGAGGAGGTCGTCAGAGCTAAGGAACTATCACAAAAACTATCAGAGGGAGACG 1850
Query 1857 TGGGGGAAGCTGCTGGGTTTCTTAGGGCACGAGGGACTCATGCATAATGGCAAGATAGTA 1916
||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct 1851 TGGGGGAAGCTACTGGGGTTCTTAGGGCACGAGGGGCTCATGCACAACGGCAAGATAGTC 1910
Query 1917 AAGCCCAATCTCAAGGAGAGGTTCAAGAGCTTCAACGCAACATTTGACGAGATACACAAG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 AAGCCCAATCTCAAGGAGAGGTTCAAGAGCTTCAACGCAACATTTGACGAGATACACAAG 1970
Query 1977 ACACAGACCACGTGGGTAGTCAACGACGAGCAGCTGCAGAGTGAACTAAGGGTCTCCATA 2036
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1971 ACACAGACCACATGGGTAGTCAACGACGAGCAGCTGCAGAGTGAGCTAAGGGTCTCCATA 2030
Query 2037 ACTGCAGTCATGATACCTGCCTACAGGGCCTTCATGGCCAGGTTTGGACAGTACTTGGAT 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 ACTGCAGTCATGATACCTGCCTACAGGGCCTTCATGGCCAGGTTTGGACAGTACTTGGAT 2090
Query 2097 CCTGGTCGCCAGACCGAGAAGTATGTCAAGTATCAGCCTGAAGATATCGAGGATCTCATC 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 CCTGGTCGCCAGACCGAGAAGTATGTCAAGTATCAGCCTGAAGATATCGAGGATCTCATC 2150
Query 2157 GACCAGCTCTTTGAAGGCAACACCTCCTCCTCTTCCACTGCCACCGCCAGGCGAAGAACA 2216
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2151 GACCAGCTCTTTGAAGGCAACACCTCCTCCTCTTCTACTGCCACCGCCAGGCGAAGAACA 2210
Query 2217 TAGcttctttcttttcttcttttttcttttgctataacactttttcctgatttcctcaat 2276
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 2211 TAGCTTCTTTCTTTTCTTCTTTTTTCTTTTGCAACAACACTTTTTCCTGATTTTCTCAAA 2270
Query 2277 ttttttcATGTCTTCTTCAACTGTTTTTGTCTGAAATGCCACAACTTGGATGACCC 2332
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2271 ATTTTTCATGTCTTCTTCAACTGTTTTTGTCTGAA-TGCCACAACTTGGATGACCC 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115762456770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5