BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488229
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14010.1 | Symbols: KNU | C2H2 and C2HC zinc fingers superfa... 950 0.0
> AT5G14010.1 | Symbols: KNU | C2H2 and C2HC zinc fingers superfamily
protein | chr5:4522149-4522935 FORWARD LENGTH=787
Length=787
Score = 950 bits (514), Expect = 0.0
Identities = 707/791 (89%), Gaps = 50/791 (6%)
Strand=Plus/Plus
Query 3 CACACATCCTTCActcttctctctctctctctctctcgcttt-tttacttttactctcat 61
||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||||
Sbjct 11 CACACATCCTTCACTCTTCTCTCTCTCTCTCTCGCT--TTTTATTTGCTTTTACTCTCAT 68
Query 62 cttctctatctctctt-ctctGTAGCTTAAAAAGCTCTCAAAAATGGCGGAACCACCACC 120
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 69 CTTCTCTATCTCTCTTCCTCTGTAGCTTAAGAACCTCTCAAAAATGGCGGAACCACCACC 128
Query 121 GTCTTACCATCATTTCGTGA-GTCCTGCAAAACCTCGATCATCGAGCAAACGTCACTCTT 179
|||||||| ||||||||| | ||||||||||| |||||||||| |||||||| |||||||
Sbjct 129 GTCTTACCTTCATTTCGT-AGGTCCTGCAAAAACTCGATCATCAAGCAAACGCCACTCTT 187
Query 180 TCTCCTCTTCTTCACATCCGA-CTTCCCACCGTCTCTTCCCGTGTCAGTACTGTCCCCGC 238
||||||| ||| ||||||| | |||||||||||||||| || |||||||||||||| ||
Sbjct 188 TCTCCTCCTCTGCACATCC-AGCTTCCCACCGTCTCTTTCCATGTCAGTACTGTCCTCGA 246
Query 239 AAGTTCTACACATCTCAAGCTCTCGGCGGTCACCAAAACGCTCACAAACGCGAACGCGCC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 AAGTTCTACACATCTCAAGCTCTCGGCGGTCACCAAAACGCTCACAAACGCGAACGCGCC 306
Query 299 GCTGCTCGTCGTAACCTCGGCGTCCTTGCTAACTCTCCACCCATCCTCGACGACAACA-C 357
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 307 GCTGCTCGTCGTAACCTCGGCGTCCTCGCTAACTCTCCACCCATCCTCGACGACAACAAC 366
Query 358 --GTTTCTTCGTCCTTACCCTTGCTTTTACCAAAACCCATTTCAAGGATCTACTTCTGGA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACGTTTCTTCGTCCTTACCCTTGCTTTTACCAAAACCCATTTCAAGGATCTACTTCTGGA 426
Query 416 AGCGAACCGGTTCAGGAGCAGACGACGATGATGACGATGGGTGGGTACGATCCGTTTAAT 475
| ||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||||| ||
Sbjct 427 AACGAACCGCTTCAGGAACAGCCGACGATGATGACGATGGATGGCTACGATCCGTTTCAT 486
Query 476 CCGTTTCCGTATGTGTACCCGTTTGGACTATCCGGTAACAAC---GACGGC--AA-CGGC 529
|||| ||||||||||||||| |||| | |||||||||||||| ||||| || ||||
Sbjct 487 CCGTATCCGTATGTGTACCCTTTTGCATTATCCGGTAACAACAACGACGGAGGAAACGGC 546
Query 530 GTCATGGAAGAAGACGAGCCTCTCGATCTCGACCTTTCTCTCCGTTTATAAGTTATCTCT 589
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 GTTATGGAAGAAGACGAGCCTCTCGATCTAGACCTTTCTCTCCGTTTATAAGTTATCTCT 606
Query 590 GCtttttttttctctctgttttgttttttttGTTCAGATGACTCTAGCTTTTAAGTACAA 649
||||| || |||| |||||||||||| |||||||||||||| ||| ||||||||
Sbjct 607 GCTTTCTT---CTCT--GTTTTGTTTTTT--GTTCAGATGACTCT---TTT-AAGTACAA 655
Query 650 CTTTGGAGCT-T-T--GTAGTAGAGTTC-ATGTCCTGCTTTTGAT-------AA------ 691
|||||||||| | | ||| |||||||| |||||||||||||||| ||
Sbjct 656 CTTTGGAGCTATATATGTACTAGAGTTCCATGTCCTGCTTTTGATTTCCTTGAAAGATAA 715
Query 692 -CTAGCTGCTACCTTTTTTGGATATTACTTATGACGACGATGAT---CGTTTCGGTTTTA 747
|||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 716 ACTAGCTGCTACCTTTTTTGGATATTACTTATGACGATGATGATGATCGTTTCGATTTTA 775
Query 748 AGTTTCTGATG 758
|||||||||||
Sbjct 776 AGTTTCTGATG 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5