BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488230 Length=1392 Score E Sequences producing significant alignments: (Bits) Value AT5G14020.1 | Symbols: | Endosomal targeting BRO1-like domain-... 2102 0.0 > AT5G14020.1 | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr5:4523520-4525863 REVERSE LENGTH=1460 Length=1460 Score = 2102 bits (1138), Expect = 0.0 Identities = 1331/1419 (94%), Gaps = 34/1419 (2%) Strand=Plus/Plus Query 1 agagagagagagagagagagagagagCATGGGGTGTGCTAC-ATCTACTAATGCTGTTGT 59 ||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||| Sbjct 18 AGAGAGAGAGAGAGAGAGAAAGAGAGCATGGGGTGTGCT-CAATCTACTATTGCTGTTGT 76 Query 60 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTTTTTGTTCTGCAGTTCCG 119 |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 77 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTGTTTGTTCTACAGTTCCG 136 Query 120 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGCGTTGCTCCCAAGACAACCAT 179 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 137 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGTGTTTCTCCCAAGACAACCAT 196 Query 180 TGATCGGTTGTCATGTCTAAGGAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 239 |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 197 CAATCGGTTGACATGTTTAAGAAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 256 Query 240 TGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTGTCTTCTAACCGGTCTTAT 299 |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 257 AGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTCACTTCTATCCGGTCTTAT 316 Query 300 CAAGAACAGTTCGGAGAATGATGGAACGGAGGGCTGCGTGGAGTTCAAATGGAGGACCCT 359 |||||| || | | || ||||||| |||||||||||| ||| |||||||||||||||| Sbjct 317 CAAGAAAAG-T---A-AA-GATGGAATGGAGGGCTGCGTAGAGCTCAAATGGAGGACCCT 370 Query 360 TGGAGATGGTCCACGAGAAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 419 ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 371 TGGCGATGGTCGACGAGCAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 430 Query 420 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGAA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 431 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGGA 490 Query 480 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCGACTGATTGCAGGAGAGA 539 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 491 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCCACTGATTGCAGGAGAGA 550 Query 540 TGCGGTTGACTTGCTGCTCAAGGCGTCAGGATACTTGGAGTTCTGCGACCGAGAGATTCT 599 |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| Sbjct 551 TGCGGTTGACTTGCTGCTCAAGGCATCTGGATACTTGGAGTTCTGCGTCCGAGAGATTCT 610 Query 600 GACTCAACTTCCTCCTGATATAAAGAATAAACTGCCAGATGATATGCAGGAAAGTGTATT 659 |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 611 GACTCAACTTCCTCATGATATAAAGAGTAAGTTGCCAGATGATATGCAGGAAAGTGTATT 670 Query 660 ACAAACTCTCTCTATCCAAGCACTTGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 719 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 671 ACAAACTCTCTCTATACAAGCACTAGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 730 Query 720 TGATAGCCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 779 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 TGATAGTCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 790 Query 780 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 850 Query 840 GAAGCTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 899 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 GAAACTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 910 Query 900 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACGTGAGCGCGGTGTGTTG 959 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 911 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACTTGAGCGCTGTGTGTTG 970 Query 960 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAGAAGGCCTGTCTTAGCTTCTGCTT 1019 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 971 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAAAAAGCCTGTCTTAGCTTCTGCTT 1030 Query 1020 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1090 Query 1080 GATTCCAGAAGTTGCTTTTAGAAAGTCTCAGACGTATGGATACTTGCTTGAAGAAGAAGA 1139 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1091 GATTCCAGAAGTTGCTTTTAGAAAGTCGCAGACATATGGATACTTGCTTGAAGAAGAAGA 1150 Query 1140 GAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCAGACGA 1199 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1151 AAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCCGACGA 1210 Query 1200 TTTTGAACTGCCTGAAATGGAGGATGTCTCTCCCGCATGAAATCAGACTCATTTGCTTAG 1259 ||||||||||||||||| |||||||||||| || ||||||| || || ||||||||||| Sbjct 1211 CTTTGAACTGCCTGAAATAGAGGATGTCTCTTCCTCATGAAACCAAACCCATTTGCTTAG 1270 Query 1260 AGAACATCTTGA-T----GA-T----G--A-T-A-GT-GA---------CCTTGATCGTT 1294 |||||||||||| | || | | | | | || || ||||||||||| Sbjct 1271 AGAACATCTTGAGTTCTTGACTACTAGCTACTCATGTTGATGATGATGACCTTGATCGTT 1330 Query 1295 GAGCAAGAAGCAA-CTCTCTACACATATTCTTTGAGTATTTTACCACTTATAATTGTAAT 1353 ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1331 GAGAAAGAAGCACTCTCTCTACACATATTCTTTGGGTATTTTACCACTTATAATTGTAAT 1390 Query 1354 GTAATATTTTGTATTCTTCTCAGACAAAATCTGATACTT 1392 |||||||||||||||||| |||||||||||||||||||| Sbjct 1391 GTAATATTTTGTATTCTTGTCAGACAAAATCTGATACTT 1429 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68573944470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5