BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488230
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14020.1 | Symbols: | Endosomal targeting BRO1-like domain-... 2102 0.0
> AT5G14020.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr5:4523520-4525863 REVERSE LENGTH=1460
Length=1460
Score = 2102 bits (1138), Expect = 0.0
Identities = 1331/1419 (94%), Gaps = 34/1419 (2%)
Strand=Plus/Plus
Query 1 agagagagagagagagagagagagagCATGGGGTGTGCTAC-ATCTACTAATGCTGTTGT 59
||||||||||||||||||| ||||||||||||||||||| | |||||||| |||||||||
Sbjct 18 AGAGAGAGAGAGAGAGAGAAAGAGAGCATGGGGTGTGCT-CAATCTACTATTGCTGTTGT 76
Query 60 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTTTTTGTTCTGCAGTTCCG 119
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 77 GGGAAGGAAGAACAAGAAGAGGATCATTCAAGAATCTGTAGTGTTTGTTCTACAGTTCCG 136
Query 120 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGCGTTGCTCCCAAGACAACCAT 179
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 137 TGTTCCTGTTCAGTCTGATCTTCAGCGCCAACTCAAAGGTGTTTCTCCCAAGACAACCAT 196
Query 180 TGATCGGTTGTCATGTCTAAGGAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 239
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAATCGGTTGACATGTTTAAGAAATCAGATTGAGTTGGTAGCTGAGGACACAGGGGGTTC 256
Query 240 TGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTGTCTTCTAACCGGTCTTAT 299
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 257 AGCCATCTCTGAGTTGCGTACAGCTTTGGAGGAGTACTTGTCACTTCTATCCGGTCTTAT 316
Query 300 CAAGAACAGTTCGGAGAATGATGGAACGGAGGGCTGCGTGGAGTTCAAATGGAGGACCCT 359
|||||| || | | || ||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 317 CAAGAAAAG-T---A-AA-GATGGAATGGAGGGCTGCGTAGAGCTCAAATGGAGGACCCT 370
Query 360 TGGAGATGGTCCACGAGAAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 419
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGCGATGGTCGACGAGCAGAGATATGTTGCACAAACCTTTGGATGGAGATGTTGATAGT 430
Query 420 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGAA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 431 GATCCACATGATGGCTGCTTTGGCATTGACTGAAGCTAACTCTCTCATGATTCCAAAGGA 490
Query 480 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCGACTGATTGCAGGAGAGA 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 491 TTGCTATGCTTCTGGTTCTGGCAATGGCGTCCGTGTGGTCTCCACTGATTGCAGGAGAGA 550
Query 540 TGCGGTTGACTTGCTGCTCAAGGCGTCAGGATACTTGGAGTTCTGCGACCGAGAGATTCT 599
|||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 551 TGCGGTTGACTTGCTGCTCAAGGCATCTGGATACTTGGAGTTCTGCGTCCGAGAGATTCT 610
Query 600 GACTCAACTTCCTCCTGATATAAAGAATAAACTGCCAGATGATATGCAGGAAAGTGTATT 659
|||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 611 GACTCAACTTCCTCATGATATAAAGAGTAAGTTGCCAGATGATATGCAGGAAAGTGTATT 670
Query 660 ACAAACTCTCTCTATCCAAGCACTTGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 719
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 671 ACAAACTCTCTCTATACAAGCACTAGGCCAGGGAACTGAGATTCAACTTGGATTAGCAGT 730
Query 720 TGATAGCCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGATAGTCAGAAAGCAACATTGTCTGTGAAGAGGAGAATTGCATGTGAGCAAGTCATCTA 790
Query 780 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CTTCACTCAGGCATATCACTGCTTGTCTAGTTGTGAAGCAGTTAGCCATGGATGCGCCAA 850
Query 840 GAAGCTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GAAACTTCTCCGGTTTATCTACTGGAAGTTTCTGGAAGCAAAGGCTGCAGCATACTACTA 910
Query 900 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACGTGAGCGCGGTGTGTTG 959
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 911 CCATGGACTGGTAACAGACAAGGGAAGTGAGCCGGCTTGTCACTTGAGCGCTGTGTGTTG 970
Query 960 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAGAAGGCCTGTCTTAGCTTCTGCTT 1019
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 971 TTTCCTTGCAGCTGCAGAGATCCTAGGAGAAAGCAAAAAAGCCTGTCTTAGCTTCTGCTT 1030
Query 1020 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 AGCTCCTCCTGTCACAAGGGCTCCTCCTATGTGGGGTGTTATGAAGCATTTGAGCCAGAA 1090
Query 1080 GATTCCAGAAGTTGCTTTTAGAAAGTCTCAGACGTATGGATACTTGCTTGAAGAAGAAGA 1139
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1091 GATTCCAGAAGTTGCTTTTAGAAAGTCGCAGACATATGGATACTTGCTTGAAGAAGAAGA 1150
Query 1140 GAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCAGACGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1151 AAAGGCAATGCAGTGTTTGCCAGAGCTTCCAGACTTTCAGTTGTCATTGAGACCCGACGA 1210
Query 1200 TTTTGAACTGCCTGAAATGGAGGATGTCTCTCCCGCATGAAATCAGACTCATTTGCTTAG 1259
||||||||||||||||| |||||||||||| || ||||||| || || |||||||||||
Sbjct 1211 CTTTGAACTGCCTGAAATAGAGGATGTCTCTTCCTCATGAAACCAAACCCATTTGCTTAG 1270
Query 1260 AGAACATCTTGA-T----GA-T----G--A-T-A-GT-GA---------CCTTGATCGTT 1294
|||||||||||| | || | | | | | || || |||||||||||
Sbjct 1271 AGAACATCTTGAGTTCTTGACTACTAGCTACTCATGTTGATGATGATGACCTTGATCGTT 1330
Query 1295 GAGCAAGAAGCAA-CTCTCTACACATATTCTTTGAGTATTTTACCACTTATAATTGTAAT 1353
||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1331 GAGAAAGAAGCACTCTCTCTACACATATTCTTTGGGTATTTTACCACTTATAATTGTAAT 1390
Query 1354 GTAATATTTTGTATTCTTCTCAGACAAAATCTGATACTT 1392
|||||||||||||||||| ||||||||||||||||||||
Sbjct 1391 GTAATATTTTGTATTCTTGTCAGACAAAATCTGATACTT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5