BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488236
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14050.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2856 0.0
> AT5G14050.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:4533261-4535301 FORWARD LENGTH=1899
Length=1899
Score = 2856 bits (1546), Expect = 0.0
Identities = 1790/1898 (94%), Gaps = 56/1898 (3%)
Strand=Plus/Plus
Query 1 tttttttGGAAAATGAAATTGTAAAACCCTAAAAAATCCAACCAGAA--G-AAAAGCTCT 57
|||| ||||||||||||||| |||||||||||||||||||||||||| | | |||||||
Sbjct 8 TTTTGTTGGAAAATGAAATTCTAAAACCCTAAAAAATCCAACCAGAAGGGTAGAAGCTCT 67
Query 58 CT---CG-------CC-GCTACAAGGTTTCTCTGCTCGTCAACGTTTTCTGGATTTGTGG 106
|| || || ||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct 68 CTCGCCGACAATTACCGGCTACAAGGTTTCTCTGCTCGTCAACGTTCTCTGAATTAGTGG 127
Query 107 TATTGAAAGATGAGCTTATCTCAGAATGCTCCGACAAGTAAGGCTAATAAAAGAGAGGAG 166
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 128 TATTGAAAGATGAGCTTATCTCAGAATGCTCCGAAAAGTAAGGGTATTAAAAGAGAGGAG 187
Query 167 CTCAAGAAACAGTAC----A-----CAGATGGGGAAGAGATTGGGTCCGATGATGATCTC 217
||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 188 CTCAAGAAACAGTACGAAGATGTTGAAGATGAGGAAGAGATTGGGTCCGATGATGATCTC 247
Query 218 ACTAGGGGAAAGAGAAGAAAGACAGATAAGGAGAAGGAGAAGCTACAAGAATCGGAGGTG 277
|||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||
Sbjct 248 ACTAGGGGAAAGAGAAGAAAGACAGAGAAGGAGAAGCAGAAGCTAGAAGAATCGGAACTG 307
Query 278 GTTGAAATGAAAAAGCTTGAGAATTTGATATTCGGGTCACTCTACTCACCTGTTACGTTT 337
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 GTTGAAATGAAAAAGCTTGAGAATTTGATATTCGGGTCACTCTACTCTCCTGTTACGTTT 367
Query 338 GGTAAGGAAGAAGAAGAAGATGGTTCGGCTTTGTTTCATGTAGACCGTTCTGCTGTGAGG 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GGTAAGGAAGAAGAAGAAGATGGTTCGGCTTTGTTTCATGTAGACCGTTCTGCTGTGAGG 427
Query 398 CAGATTCCGGATTAC------GA----G--GATGAT---GA------TGATGAAGAGAAT 436
|||||||| || ||| || | |||||| || |||||||||||||
Sbjct 428 CAGATTCCTGACTACGAGGATGATGGTGATGATGATGAAGAGCTTTCTGATGAAGAGAAT 487
Query 437 GGTCAAGCTGTGGGAATTAGAAAGGGAGAAGCCGCCTGGGAGGATGAAGAAGAGAAACAG 496
||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 GGTCAAGTTGTGGCAATTAGAAAGGGAGAAGCTGCCTGGGAGGATGAAGAAGAGAAACAG 547
Query 497 ATAAACATTGATATAGCTAGTGTCAACCGTCTGAGGAAGCTAAGGAAAGAGGAGAATGAG 556
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 548 ATAAACGTTGATATAGCTAGTGTCAACCGTCTAAGGAAGCTAAGGAAAGAGGAGAATGAG 607
Query 557 GGCTTGATCTCTGGGTCTGAGTACATTGCAAGGCTGAGGGCTCATCATGCTAAGCTAAAC 616
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GGTTTGATCTCTGGGTCTGAGTACATTGCAAGGCTGAGGGCTCATCATGCTAAGCTAAAC 667
Query 617 CCGGGGACTGATTGGGCTCGGCCAGATTCTCAAATCA-TTGATGGAGAGTCTTCAGATGA 675
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 668 CCGGGGACTGATTGGGCTCGGCCAGATTCTCAAAT-AGTTGATGGAGAGTCTTCAGATGA 726
Query 676 TGATGATACCCAGGATGGAGGAGTTGATGATATCCTCCGGACGAATGAAGATCTTGTGGT 735
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 727 TGATGATACTCAGGATGGAGGAGTTGATGATATCCTTCGAACGAATGAAGATCTTGTGGT 786
Query 736 GAAGTCCCGTGGTAACAAGCTGTGTGCTGGTCGTCTTGAATACTCAAAGCTTGTGGATGC 795
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 GAAGTCTCGTGGTAACAAGCTGTGTGCTGGTCGTCTTGAATACTCTAAGCTTGTGGATGC 846
Query 796 CAATGCAGCGGATCCTTCAAATGGCCCGATAAACTCTGTCCACTTCCATCAGAACGCTCA 855
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 847 CAATGCAGCGGATCCTTCAAATGGTCCAATAAACTCTGTCCACTTCCATCAGAACGCTCA 906
Query 856 GCTGCTTCTCACTGCTGGATTGGATCGACGGTTAAGGTTTTTCCAGATTGATGGAAAGAG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GCTGCTTCTCACTGCTGGATTGGATCGACGGTTAAGGTTTTTCCAGATTGATGGAAAGAG 966
Query 916 GAACACCAAGATCCAGAGCATTTTTCTTGAGGACTGTCCCATTCGTAAAGCGGCTTTCTT 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GAACACCAAGATCCAGAGCATTTTTCTTGAGGACTGTCCCATTCGTAAAGCGGCTTTCTT 1026
Query 976 GCCCAATGGCTCTCAGGTCATTGTCTCCGGAAGAAGAAAGTTCTTTTACAGCTTTGATTT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GCCCAATGGCTCTCAGGTCATTGTCTCCGGAAGAAGAAAGTTCTTTTACAGCTTTGATTT 1086
Query 1036 GGAGAAGGCAAAGTTTGACAAAATTGGCCCTTTGGTTGGTAGAGAGGAGAAAAGCTTGGA 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGAGAAGGCAAAGTTTGACAAAATTGGCCCTTTGGTTGGTAGAGAGGAGAAAAGCTTGGA 1146
Query 1096 ACAGTTT-GAGGTGTCACAAGACTCTAACACCATAGCTTTTGTTGGCAACGAAGGTTATA 1154
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ATA-TTTCGAGGTGTCACAAGACTCTAACACCATAGCTTTTGTTGGCAACGAAGGTTATA 1205
Query 1155 TCTTACTTGTGTCTACAAAAACAAAAGAGCTGATAGGAACCCTAAAGATGAACGGTTCAG 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1206 TCTTACTTGTGTCTACAAAAACAAAAGAGCTGATAGGAACCCTAAAGATGAATGGTTCAG 1265
Query 1215 TTAGGTCCTTAGCATTTAGTGATA-ATGGAAAGCATTTGCTGAGCTCAGGAGGTGATGGG 1273
||||||| |||||||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 1266 TTAGGTCTTTAGCATTTAGTGA-AGATGGGAAGCATTTGCTGAGCTCAGGAGGTGACGGG 1324
Query 1274 CAAGTCTACGTCTGGGATCTGAGAACAATGAAATGCTTATACAAAGGCGTGGATGAAGGC 1333
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CAAGTCTATGTCTGGGATCTGAGAACAATGAAATGCTTATACAAAGGCGTGGATGAAGGC 1384
Query 1334 AGCACTTGTGGCACTTCTCTTTGCAGTTCGCTAAACGGAGCATTGTTTGCCTCTGGAACC 1393
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1385 AGCACTTGTGGCACTTCTCTTTGCAGTTCGCTTAACGGAGCATTGTTTGCTTCTGGAACC 1444
Query 1394 GATAGAGGAATCGTAAACATTTACAAGAAATCTGAGTTTGTGGGAGGCAAGAGAAAGCCG 1453
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1445 GACAGAGGAATCGTAAACATTTACAAGAAATCTGAGTTTGTGGGAGGCAAAAGAAAGCCG 1504
Query 1454 ATAAAGACAGTGGACAATCTCACTTCCAAGATAGATTTCATGAAGTTCAACCATGATGCT 1513
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1505 ATAAAGACAGTGGACAATCTCACATCCAAGATAGATTTCATGAAGTTCAACCATGATGCT 1564
Query 1514 CAGATTCTAGCTATAGTCTCTACAATGAACAAAAACAGCGTAAAGCTAGTCCATGTTCCA 1573
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1565 CAGATTCTAGCTATAGTCTCTACAATGAACAAAAACAGTGTAAAGCTAGTCCATGTTCCA 1624
Query 1574 TCCCTAACCGTCTTCTCAAACTGGCCGCCACCCAACAGCACAATGCATTACCCTCGCTGC 1633
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1625 TCCCTAACCGTCTTCTCAAACTGGCCGCCACCAAACAGCACAATGCATTACCCTCGCTGC 1684
Query 1634 CTAGACTTCAGCCCCGGAAGTGGCTTCATGGCTATGGGAAACGCCGCCGGAAAAGTTTTG 1693
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1685 CTAGACTTCAGCCCCGGAAGTGGCTTCATGGCTATGGGGAACGCTGCCGGAAAAGTTTTG 1744
Query 1694 CTGTATAAACTGCATCATTACCAGAATGCTTGAAGTGGTCTT-AGCAAGGGCAGTTTTGG 1752
||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1745 CTGTATAAACTCCATCATTACCAGAATGCTTGAAGTGGTCTTTAACAAGGGCAGTTTTGG 1804
Query 1753 GATTGTTGTGTTTTATCCTTTATTTTGTCGCAAGTACTACT--ATGTTATCAATTTTCCT 1810
||||||||||||| || ||| |||||||||||||||| || |||||||||||||||||
Sbjct 1805 GATTGTTGTGTTTCCTC-TTT-TTTTGTCGCAAGTACT-CTTTATGTTATCAATTTTCCT 1861
Query 1811 ATCCAATTTTCGATCAATGAAAAATTTTCTTTCTGATT 1848
|||||||| |||||||||||||||||||||||||||||
Sbjct 1862 ATCCAATTATCGATCAATGAAAAATTTTCTTTCTGATT 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5