BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488241
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14090.1 | Symbols: | unknown protein; Has 56 Blast hits to... 2036 0.0
> AT5G14090.1 | Symbols: | unknown protein; Has 56 Blast hits
to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes
- 8 (source: NCBI BLink). | chr5:4547202-4549417 FORWARD
LENGTH=1308
Length=1308
Score = 2036 bits (1102), Expect = 0.0
Identities = 1227/1288 (95%), Gaps = 5/1288 (0%)
Strand=Plus/Plus
Query 1 TGTAGCAACTGAATCACAAAAATGAAGTTTTGGGGCTGGATGCACCATAAGTCCCGGGAG 60
||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 8 TGTAGCAACTGAAGCACGAAAATGAAGTTTTGGGGCTGGATGCATCATAAGTTCCGGGAG 67
Query 61 AATAGCAAAGAGCCATTGAAAGATGCTTCAACTGGTAACAGCTATTCCATCCTTTCAGCT 120
||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 68 AATAGCAAAGAGCCATTAAAAGATGCTTCTACTGGCAACAGCTATTCCATTCTTTCAGCT 127
Query 121 CATCCATCCCTTGATAGCCAAGAGGTTTACCCCACAGCATGTGCTGGCGCCAGATACAAT 180
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 128 CATCCATCCCTTGATAGCCAAGAGGTTTACCCAACAGCATGTGCTGGCTCCAGATACAAT 187
Query 181 ACTGGATTCAGAAAACAGGTTAACCTATTCCAGGAAAGCTCCTTCGCAGGACCCAAGGGA 240
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 188 ACTGGATTCAGAAAACAGGTCAACCTGTTCCAGGAAAGCTCCTTCGCAGGACCCAAGCAA 247
Query 241 TACACAGAAGAAAACTTCAAGGATGAGAGAAACAGTGAtttttttGATGGATTTCTTGCA 300
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TACACAGAGGAAGACTTCAAGGATGAGAGAAACAGTGATTTTTTTGATGGATTTCTTGCC 307
Query 301 ATTGGAACCCTTGGTGGAGAAACACTTCTTGATGAACAACCAGCAACACCGACATTTGGC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 ATTGGAACCCTTGGTGGAGAAACACTTCTTGATGAACAACCAGCAACGCCGACATTTGGC 367
Query 361 ATGTCATTTGAGGACCCGGCAATAGATGATGCAGATGTTACAGAGAATGATTTGAAGCTC 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 368 ATGTCATTTGAGGACCCAGCAATAGATGATGCAGATGTGACAGAGAATGATTTGAAGCTC 427
Query 421 ATAAGCAATGAATTGGAGAAGTTCCTTGAGGCTGAAGCTAAAGAAGGACACCACCAACCA 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATAAGCAATGAATTGGATAAGTTCCTTGAGGCTGAAGCTAAAGAAGGACACCACCAACCA 487
Query 481 TCAGGAAGAAACAGTGACACTAACACTATTGCATCCACCATTGAGGCCATTGAGGGACTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 488 TCAGGAAGAAACAGTGACACTAACACTATTGCATCCACCATTGAGGCCATTGAGGGAGTA 547
Query 541 GATGATGAAGAAGATAATCAGCCAATGAAGTTCCCACTCCAAGAGTATCTTTTTGGCTCT 600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 548 GATGATGAAGAAGATAATCAGCCAATGAAGTTCCCACTCCAAGAGTATTTTTTTGGATCT 607
Query 601 CTAAACGAATTCCCAGAAACAAAGATTGCAGGGAAGAAAGAAAGGGCATCACTTGGCGAG 660
|||| |||| |||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 608 CTAATCGAACTCCCAGAATCAAAGATTGCAGGGAAGAAGGATAGGGCATCACTTGGCGAA 667
Query 661 CTGTTTCAAATAACAGAAGTGCTAGATGAA-AATTCAGAAAACATATATGGGAAGAAAAA 719
|||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||
Sbjct 668 CTGTTTCAAATAACAGAAGTGCAAGATAAACAAT-CAGAAAACATATATGGGAAGAAAAA 726
Query 720 GAAGCAAACCAGTTCAGCTCACAAGTCCGCAAAGCATCTTGTGAAGAAGGTACTCAAAAA 779
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 GAAGCAACCCAATTCAGCTCACAAGTCCGCAAAGCATCTTGTGAAGAAGGTACTGAAAAA 786
Query 780 GATACACCCATCCTCAAGGGGCTCTGTCAGTGGTAAAACTGAAGTGGATTCCACAAAGAA 839
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 787 GATACACCCATCCTCAAGGGGCTCTGTCAGTGGTAAACCTGAAGTGGATTCCACAAAAAA 846
Query 840 GAAGTTCCAAAAGATGGTACAAGTTTTCCATAGGAAAGTACATCCAGAAGAATCCATAAT 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 GAAGTTCCAAAAGATGGTACAGGTTTTCCATAGGAAAGTACATCCAGAAGAATCCATAAT 906
Query 900 GGAAACCGAAATATACAGCAGCGTGGCAAATCCAAAAAACAGCAAAGCAAATTCTATTGA 959
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 907 GGAAACCAAAATATACAGCAGCGTGGCAAATCCAAAAAGCAGCAAAGCAAATTCTATTGA 966
Query 960 CTTAACATTCGAGAAGGTGAACCCCTGTCATGAGGCAAGTAATAGATGTATCCAGTATGA 1019
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 967 CTTAACATTCGAGAAGGTGAACCATTGTCACGAGGCAAGTAAAAGATGTATCCAGTATGA 1026
Query 1020 GCTGAGAAGTTCTCGCTCAGCCAAAAACAGAGAACACTGGATCAAGACAGACGAAG-CAT 1078
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 1027 GCTTAGAAGTTCTCGCTCAGCCAAAAACGGAGAACACTGGATCAAGACAGACGAAGAC-T 1085
Query 1079 ATTTCGTGTTGGAGCTGTAGCAAAGGGATCAGAAGAAATATGTAAACTAAGAAGTGTGAG 1138
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1086 ATTTCGTGTTGGAACTGTAACAAAGGGATCAGAAGAACTATGTAAACTAAGAAGTGTAAG 1145
Query 1139 TCTATTATGTCACTTCATGCATGTGTGAATTCGTGTGGTATGATTAAGGAAAATGTGTTC 1198
| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1146 TGTATAATTTCACTTCATGCATGTGTGAATT-GTGTGGTATGATTAAGGAAAATGTGTTC 1204
Query 1199 AAACTTACTGGGAATGCTTATTACGCCCCTCTATGTAATAATAAATGTTACAGGGTGTTA 1258
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct 1205 AAACTTACTGGGAATGTTTATTACGCCCCTCTATGTAATAATAAATGATAAAGGGTGTTA 1264
Query 1259 TAATTGCAGCAAGATATCTCATATACAT 1286
||||||||||||||||||||||||||||
Sbjct 1265 TAATTGCAGCAAGATATCTCATATACAT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63252686700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5