BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488242
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14100.1 | Symbols: ATNAP14, NAP14 | non-intrinsic ABC prote... 1504 0.0
> AT5G14100.1 | Symbols: ATNAP14, NAP14 | non-intrinsic ABC protein
14 | chr5:4549438-4551843 REVERSE LENGTH=1316
Length=1316
Score = 1504 bits (814), Expect = 0.0
Identities = 907/951 (95%), Gaps = 9/951 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGTGTCGACGTTTTCGAGCCCCACGCCTGTCTCCGGCATCGCTGAACCACCAGCA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 212 ATGGCAGTGTCGACGTTTTCGAGCCCCACGCCTGTCTTCGGCATCGCTGAACCACCAGCA 271
Query 61 TCATTCTCCTCCGCCGCAATTGGCTGGAAGCAACCGTTGAGATTTCGGAGGACGAAGAAG 120
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TCATTCTCCTCCACTGCAATTGGCTGGAAGCAACCGTTGAGATTTCGGAGGACGAAGAAG 331
Query 121 CCTCGAGTAATCTCTTGCGATTATTCTTGCATCGAGGTTAGGGATGTCTGCTACCGTCCT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 332 CCTCGAGTAATCTCTTGCGATTATTCTTGCATCGAGGTTAGAGATGTCTGCTACCGTCCT 391
Query 181 CCTGGAACACAATTGAATATCTTGAATGCTGTTAATTTTTCCCTGC-CTGAGAGAAGCTT 239
||||||||||| |||||||||||||||| |||||||||||||||| | |||| ||||||
Sbjct 392 CCTGGAACACAGTTGAATATCTTGAATGGAGTTAATTTTTCCCTGCGC-GAGAAAAGCTT 450
Query 240 TGGCTTGATTTTTGGCAAGAGTGGGAGTGGTAAAACTACCCTTTTGCAGCTTCTTGCTGG 299
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TGGCTTGATCTTTGGGAAGAGTGGGAGTGGTAAAACTACCCTTTTGCAGCTTCTTGCTGG 510
Query 300 GCTAAACAAACCAACATCAGGTTCCATTTGTATCCAAAGATATGGGGATGATGGCCAGCC 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 511 GCTAAACAAACCAACATCAGGTTCCATTTGTATCCAAGGATATGGGGATGATGGCCAGCC 570
Query 360 TAAGGCGGTTCCTGAGTTGCTGCCCACTGAAAAAGTGGGCATTGTTTTCCAGTTTCCAGA 419
||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 571 GAAGGCGGATCCTGACTTGCTTCCCACTGAAAAGGTGGGCATTGTTTTCCAGTTTCCAGA 630
Query 420 GAGATTCTTTGTTGCAGATAATGTGCTTGATGAAATTACTTTTGGTTGGCCAAGGCAAAA 479
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 631 AAGATTCTTTGTTGCAGATAATGTGCTTGATGAGATTACTTTTGGTTGGCCAAGGCAAAA 690
Query 480 AGGTAGTTTGCAGCTTAAGGAGCAACTGACTTCGAATCTCCAGAGAGCATTCAATTGGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 691 AGGTAGTTTGCAGCTTAAGGAGCAACTGACTTCGAATCTCCAGAGAGCATTTAATTGGGT 750
Query 540 TGGATTAGACAGCATCCCACTTGATAAAGATCCTCAGTTACTAAGTGGAGGCTACAAACG 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 TGGATTAGACAGCATCCCACTTGATAAAGATCCCCAGTTACTAAGTGGAGGCTACAAACG 810
Query 600 TCGACTTGCACTAGCTATTCAATTGGTGCAAACTCCAGATTTACTGATACTGGATGAGCC 659
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TCGGCTTGCACTAGCTATCCAATTGGTGCAAACTCCAGATTTACTGATACTGGATGAGCC 870
Query 660 CCTCGCTGGTCTTGATTGGAAAGCACGTGCAGATGTTGCAAAGCTCTTGAAGCACCTTAA 719
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CCTTGCTGGTCTTGACTGGAAAGCACGTGCAGATGTTGCAAAGCTCTTGAAGCACCTTAA 930
Query 720 GAAGGAACTGACTTTACTTGTTGTAAGTCATGACCTAAGAGAGTTGGCGGCCTTGGTTGA 779
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 931 GAAGGAACTGACTTTACTTGTTGTAAGTCATGATCTAAGAGAGTTAGCAGCCTTGGTTGA 990
Query 780 CCAGTCATGGAGGATGGAAACAGGGGGTGTTCTTCTTGCAGAACGTCCACCACGTTAGTT 839
||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct 991 CCAATCATGGAGGATGGAAACAGGTGGTGTTCTTGTTGCAGAACGTCCACCACTTTAGTT 1050
Query 840 CAATGTTCACTATTGCGGAAGGTCCATACCAGGTTTGGCTCGGATGTTATTGATTTTTTC 899
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CAATGTTCACTATTACGGAAGGTCCATACCAGGTTTGGCTCGGATGTTATTGATTTTT-- 1108
Query 900 GAGTATTGTTGCAAAAAAGTGATACAGGCTTTTACCCTGGCATAGGTTTTT 950
| | || || |||||||||||||||||||||||||||| |||||||||
Sbjct 1109 G--T-TTA--GCTAAAAAGTGATACAGGCTTTTACCCTGGCTTAGGTTTTT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5