BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488243
Length=470
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14105.1 | Symbols: | unknown protein; Has 30201 Blast hits... 601 2e-171
> AT5G14105.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4551974-4553051
REVERSE LENGTH=576
Length=576
Score = 601 bits (325), Expect = 2e-171
Identities = 443/495 (89%), Gaps = 27/495 (5%)
Strand=Plus/Plus
Query 1 ACGCACGATGAACGAATCAT-AGCCTTGGCTGCTTCTCCAAGT----AAAAAACACATAA 55
|||||||||||||||||||| ||| || ||||||||||||||| |||||| ||||||
Sbjct 1 ACGCACGATGAACGAATCATGAGCTTTAGCTGCTTCTCCAAGTAAAAAAAAAAAACATAA 60
Query 56 GCCCTCTTTAAATCCCTAGCTAAGCTTCCACCGAGAAGTAGTTCAATCT--G-------- 105
||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 61 GCCCTCTTTAAATCCCTAGCT-AGCTTCCACCGAGAAGTTGTTCAATCTGGGAAAAATCA 119
Query 106 --A--T--T-TTGCGGATCGTTAATCGGAACAATGGGTTTGACGAATTTCATATTGACGG 158
| | | || |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 120 AAATCTGCTATTACGGATCTTTAATCGGAA-AATGGGTTTGACGAATTTCATATTGACGG 178
Query 159 TAGCCGGAGTAGGCGCTGTGGTGATGCTATTGAGGAGCGACGTGAAGCAATCTGTCACCG 218
| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 179 TGGCCGGAGTAGGCGCCGTGGTGATGCTACTGAGGAGCGACGTGAAGCAATCTGTGACCG 238
Query 219 TCTTAAGGCGTAACGTCAAGCACATCCGCCACTGGCTCGAAGAAGAATCCTCCGCCGCCT 278
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCTCAGGCGTAACGTCAAGCACATCCGCCACTGGCTCGAAGAAGAATCCTCCGCCGCCT 298
Query 279 CCTCCAAGGCAGCGGAGTCCATAAAACCAAAGGAAATAGAGACGAAGGTTCCGAAGAAGG 338
| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 CTTCCAAGGCAGCTGAGTCCATAAAACCAAAGGAAATAGAGGTAAAGGTTCCGAAGAAGG 358
Query 339 ACATTCCAAAAGAGAAGGATTAGTGTCCCTCTATATATACAC---GAAGGGTCTTTGTTA 395
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |
Sbjct 359 ACATTCCAAAAGAGAAGGATTAGTGTGTTTCTATGTATACACGAAGAAGGGTCTTTGTAA 418
Query 396 GAGTCGAATATATGACTTTGGTTTCAACACTTAACTATTTTTAGCTGAGAGTTTTGGTTT 455
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGTCGGATTTATGACTTTGGTTTCAACACTTAACTATTTTTAGCTGAGAGTTTTGGTTA 478
Query 456 TATGTTTAAAGGGTT 470
|||||||||||||||
Sbjct 479 TATGTTTAAAGGGTT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22354195415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5