BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488247
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14150.1 | Symbols: | Protein of unknown function, DUF642 |... 2193 0.0
> AT5G14150.1 | Symbols: | Protein of unknown function, DUF642
| chr5:4565172-4566988 REVERSE LENGTH=1416
Length=1416
Score = 2193 bits (1187), Expect = 0.0
Identities = 1327/1393 (95%), Gaps = 16/1393 (1%)
Strand=Plus/Plus
Query 1 ACCTTTTGTTTCCTGAAATGTACTAACACTAGAACCAGATCCAAAACGACACAGTTCTAC 60
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 34 ACCTTTTGTTTCCTGAAATGTACAAACACTAGAACCAGATCCAAAAAGACACAGTTCTAC 93
Query 61 TTTATCTTAAGTGGGATGATGGCCTTGG---CTTCAAACCCTCTGTGTGTTTAGTCTTGT 117
|| | | | ||||||||||| ||| ||||||||| ||||||||||||||||| |
Sbjct 94 --TA---T-A-T-GGATGATGGCCCTGGCTTCTTCAAACCATCTGTGTGTTTAGTCTTCT 145
Query 118 CAATTGTGCACAACTAAAAGACAAGTCCACAAAGTCTGAAGCAAAATGGCGATATGGTTT 177
|| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 146 CATTTGTGCACAACTCAAAGACAAGTCCACTAAGTTTGAAGCAAAATGGCGATATGGTTT 205
Query 178 CAGAGAGTTTTCCTGTTGCTTCTCGTTTCCTGTTGCGCCTCTTCAGATTTTCTGGAAAAT 237
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 206 CAGAGAATTTTCCTGTTGCTTCTCGTTTCCTGTTGCGCCTCTTCAGATTTTTTGGAAAAT 265
Query 238 CCAGACTTTGAATCTCCACCGTTAAACTTGA-CTACAAACTCAAATGCTAGCTCTGTGTC 296
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 266 CCAGACTTCGAATCTCCACCGTTAAACTT-ACCTACAAACTCAAATGCTAGCTCTGTATC 324
Query 297 GCTGGATCAGAACAGTACACTCCCTGGATGGACATTCCAAGGGACAGTGCTTTATGTTGA 356
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 325 GCTGGATCAGAACAGTACACTCCCGGGATGGACATTCCAAGGGACAGTGCTTTATGTTGA 384
Query 357 ATTGCCTGATACCGGACATGCCGTTCAGCTCAGTGAAGATGGCAAGATCAATCAAACATT 416
| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 385 ACTGCCTGATACCGGACACGCGGTTCAGCTCGGTGAAGATGGCAAGATCAATCAAACATT 444
Query 417 CATTGCCAAAGGTGATGATTTGAACTACATCCTCACATTCGCATTGATCCACGCAGGCCA 476
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 445 CATTGCCAAAGGTGATGAATTGAACTACATCCTCACATTCGCACTGATCCACGCAGGCCA 504
Query 477 AAACTGTTCAAGCTCTGCTGGTCTCAGTGTCTCGGGGCCAGACAGTAATGCGGTTTTTTC 536
|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 505 GAACTGTACAAGCTCTGCTGGTCTCAGTGTCTCGGGGCCAGACAGCAATGCGGTCTTTTC 564
Query 537 TTATC-GACAAAACTACAGTAAGGTTTCATGGCAGAGCTACAGTCATAACTTGGGTAGTT 595
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TTA-CAGACAAAACTACAGTAAGGTTTCATGGCAGAGCTACAGTCATAACTTGGGTAGTT 623
Query 596 GGGGGAATGGTCAGCCTATTAACTTAGTTCTTGAAAGTCAGGCAATAGATTCTGATTCTG 655
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GGGGGAATGGTGAGCCTATTAACTTAGTTCTTGAAAGTCAGGCAATAGATTCTGATTCTG 683
Query 656 ATACAAACTCCACATGTTGGCCTATCATTGACACATTGCTTATCAAGACTGTTGGTGTAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 ATACAAACTCCACATGTTGGCCTATCATTGACACATTGCTTATCAAGACTGTTGGTGTAA 743
Query 716 CATTGGTTCAAGACAGTGGTAACCTCTTAATCAATGGTGGATTTGAATCTGGACCGGGTT 775
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 744 CATTGGTCCAAGACAGTGGTAACCTCTTAATCAATGGTGGATTTGAGTCTGGACCTGGTT 803
Query 776 TTTTGCCCAACTCAACCGATGGAGTTCTGATTGATGCGGTGCCAAGCCTGATCCAATCAC 835
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 804 TCTTGCCCAACTCAACCGATGGAGTTCTGATTGACGCGGTTCCAAGCCTGATTCAATCAC 863
Query 836 CATTAAGGCAGTGGTCTGTTATAGGAACAGTCAGATACATAGACTCGGAGCACTTCCATG 895
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CATTAAGGCAGTGGTCTGTCATAGGAACAGTCAGATACATAGACTCGGAGCACTTCCATG 923
Query 896 TCCCAGAAGGAAAAGCTGCTATAGAAATTCTGTCTTACACAGCTCCATCTGGCATACAGA 955
|||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 924 TCCCAGAAGGCAAAGCTGCAATAGAAATTCTGTCTAACACAGCTCCATCTGGCATACAGA 983
Query 956 CAGCAACAAAAGGCACAAGTGAAGGTTCAAGATACAACCTCACATTTACCTTGGGAGATG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 984 CAGCAACAAAAGGCACAAGTGAAGGTTCAAGATACAACCTCACATTTACCTTAGGCGATG 1043
Query 1016 CTAACGATGCGTGCAGAGGACATTTCGTGGTGGGTGTTCAAGCTGGCTCCGCAACTCAAA 1075
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1044 CTAACGATGCGTGCAGAGGACATTTCGTGGTGGGTGCTCAAGCTGGCTCCGTAACTCAAA 1103
Query 1076 ACTTCACATTGGAGAGCAATGGGACTGGCTCTGGTGAGAAGTTTGGGTTAGTGTTTGAAG 1135
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 ACTTCACATTGGAGAGTAATGGGACTGGCTCTGGTGAGAAGTTTGGGTTAGTGTTTGAAG 1163
Query 1136 CAGACAAAGATGCAGCACAGATAAGTTTCACCAGCTACTCAGCTACAATGACAAAAGAGG 1195
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1164 CAGACAAAGATGCAGCACAGATAAGTTTCACCAGCTACTCAGTTACAATGACAAAAGAGA 1223
Query 1196 ATGTTGTTTGTGGTCCTGTGGTTGATGAAGTGATTGTACATCCTCTTGGTGGAACAGCCT 1255
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1224 ATGTTGTTTGTGGTCCTGTGATTGATGAAGTGATGGTACATCCTCTTGGTGGAACAGCCT 1283
Query 1256 CAGTAAAACCCACTTGGCTGCTACTTATTTTCGCTTTGTTGTATGTTGCAGTTCTCTAAT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1284 CAGTAAAACCCACTTGGCTGCTACTTATTTTCGCTTTGTTGTATGTTGCAGTTCTCTGAT 1343
Query 1316 TGAATCTGTTTGG-AGAGAGGTCACAAAGAAGATATTTTTGCAAAGAGATGTGATAATCA 1374
|||| |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1344 TGAAACTGTTTGGGAGAGAGGTCATAAAGAAGATATTTTTGCAAGGAGATGTGATAATCA 1403
Query 1375 TTCTAGTTTCATG 1387
|||||| ||||||
Sbjct 1404 TTCTAGCTTCATG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5