BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488248
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14160.1 | Symbols: | F-box family protein | chr5:4567333-4... 451 4e-126
> AT5G14160.1 | Symbols: | F-box family protein | chr5:4567333-4568467
FORWARD LENGTH=1059
Length=1059
Score = 451 bits (244), Expect = 4e-126
Identities = 334/374 (89%), Gaps = 19/374 (5%)
Strand=Plus/Plus
Query 483 CTTTCGCTTCCGCTTGGGAAATTTATGGCGCC--ATGGAT-C-ATTTCTGCCAGATTATA 538
||||||||||||||||||| ||| | || || || ||| | |||| | |||| |||
Sbjct 642 CTTTCGCTTCCGCTTGGGATCTTT-TAGC-CCTTAT-GATACAATTT-GGACAGACTATC 697
Query 539 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATATTTTGATGGTTGCCAGCG 598
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 698 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATTTTTTGATGGTTGGCTGCG 757
Query 599 TTCTTAAACGTAGTGACCTTTCTTGGC-ATTTC----CG--C--GCCGTGATCTTGGATC 649
||||||||||| |||||||||| |||| |||| || | ||||||||||||||||
Sbjct 758 TTCTTAAACGTCGTGACCTTTCCTGGCTTTTTCGTGGCGACCAGGCCGTGATCTTGGATC 817
Query 650 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGAATTACCAGAAACTCCATCTATT 709
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 818 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGTATTACCAGAAACTCCACCTATT 877
Query 710 TCAGCGGCCTTCAATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGA 769
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TCAGCGGTCTTCCATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGG 937
Query 770 TTCAACGCTTTTCAG-CTTCTTCTATTTCCTCCAGACCATTCTTTAATGCTCGCTGGCTC 828
|||||||| |||| | |||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 938 TTCAACGCCTTTC-GTCTTCTTCTATCTCCTCCAGACCATTCTCTAATGCTCGCTGGCTC 996
Query 829 TTCCCCACTTCTTA 842
||||||||||||||
Sbjct 997 TTCCCCACTTCTTA 1010
Score = 429 bits (232), Expect = 2e-119
Identities = 271/289 (94%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 9 GGGGGAG-GGATTGGTC-GAGCTTCCTGAGGATTTGATCAGATTGGTTCTGGGACGGCTG 66
||||| | ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 38 GGGGG-GTGGATTGGTCGGAGCTTCCTGAGGATGTGATCAGATTGGTTCTGCGACGGCTG 96
Query 67 AGGTTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCGCTTGGTATAGGGTTTGGGGA 126
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 97 AGACTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCACTTGGTGTAGGGTTTGGGGA 156
Query 127 GAATGTGT-TCCCAAACCTAATCAGGTTCCGTGGCTGATTCTATTCCCTGATCCAGCACA 185
|| ||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 157 GACTGTGTCTCC-AAACCTAATCAGGTTCCGTGGCTAATTCTTTTCCCTGATCCAGCACA 215
Query 186 AACCAGACGCAGTTGCATGTTGTACAATCCGCAGGAAGAAGAAAACGTTTACACAATTCA 245
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 216 AATCAGACGCAGTTGCATGTTGTACAATCCACAGGAAGAAGAAAACGTTTACACAATTCA 275
Query 246 AGATCTTGGTGTGGATCCTTGCCTGGCAAGTTGCGGCACCTGGCTCCTC 294
||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 276 AGACCTTGGTGTGGATCCTTGCCTTGCAAGTTGCGGCACCTGGCTCCTC 324
Score = 237 bits (128), Expect = 1e-61
Identities = 154/166 (93%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 297 CAAAGCCGAGATGATTGGG-TACCCT-GCTACTGATAAGGCAGTTGTGTGGATAGACGAG 354
|||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 366 CAAAGCCGAGATGA-TGGGATACCCTAG-TACTGATAAGGCAGTTGTGTGGATAGACGAG 423
Query 355 AAAACTAAAGACTACGTAGTTGCTTGTAGTTGGGGTGCACACAGGCATACGGCCTTTTGC 414
|||||||||||||||||||||||||| || ||||||| | ||| |||| | |||||||||
Sbjct 424 AAAACTAAAGACTACGTAGTTGCTTGCAGCTGGGGTGGAGACAAGCATGCAGCCTTTTGC 483
Query 415 AAGAAAGGAGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 460
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 484 AAGAAAGGCGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5