BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488248 Length=843 Score E Sequences producing significant alignments: (Bits) Value AT5G14160.1 | Symbols: | F-box family protein | chr5:4567333-4... 451 4e-126 > AT5G14160.1 | Symbols: | F-box family protein | chr5:4567333-4568467 FORWARD LENGTH=1059 Length=1059 Score = 451 bits (244), Expect = 4e-126 Identities = 334/374 (89%), Gaps = 19/374 (5%) Strand=Plus/Plus Query 483 CTTTCGCTTCCGCTTGGGAAATTTATGGCGCC--ATGGAT-C-ATTTCTGCCAGATTATA 538 ||||||||||||||||||| ||| | || || || ||| | |||| | |||| ||| Sbjct 642 CTTTCGCTTCCGCTTGGGATCTTT-TAGC-CCTTAT-GATACAATTT-GGACAGACTATC 697 Query 539 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATATTTTGATGGTTGCCAGCG 598 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 698 TTGACTGGAAGACCAACATAGTAATCACCATCTCTGGAGATTTTTTGATGGTTGGCTGCG 757 Query 599 TTCTTAAACGTAGTGACCTTTCTTGGC-ATTTC----CG--C--GCCGTGATCTTGGATC 649 ||||||||||| |||||||||| |||| |||| || | |||||||||||||||| Sbjct 758 TTCTTAAACGTCGTGACCTTTCCTGGCTTTTTCGTGGCGACCAGGCCGTGATCTTGGATC 817 Query 650 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGAATTACCAGAAACTCCATCTATT 709 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 818 TAGGTATCACCGTGCAAGCATCCTCCGATATCCAAGGTATTACCAGAAACTCCACCTATT 877 Query 710 TCAGCGGCCTTCAATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGA 769 ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 878 TCAGCGGTCTTCCATCTAGCCAAAAGGATGTCTTCGTCTTCAATCTCTCCTCCCAGAAGG 937 Query 770 TTCAACGCTTTTCAG-CTTCTTCTATTTCCTCCAGACCATTCTTTAATGCTCGCTGGCTC 828 |||||||| |||| | |||||||||| |||||||||||||||| |||||||||||||||| Sbjct 938 TTCAACGCCTTTC-GTCTTCTTCTATCTCCTCCAGACCATTCTCTAATGCTCGCTGGCTC 996 Query 829 TTCCCCACTTCTTA 842 |||||||||||||| Sbjct 997 TTCCCCACTTCTTA 1010 Score = 429 bits (232), Expect = 2e-119 Identities = 271/289 (94%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 9 GGGGGAG-GGATTGGTC-GAGCTTCCTGAGGATTTGATCAGATTGGTTCTGGGACGGCTG 66 ||||| | ||||||||| ||||||||||||||| ||||||||||||||||| |||||||| Sbjct 38 GGGGG-GTGGATTGGTCGGAGCTTCCTGAGGATGTGATCAGATTGGTTCTGCGACGGCTG 96 Query 67 AGGTTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCGCTTGGTATAGGGTTTGGGGA 126 || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 97 AGACTCTCGGATTTTCATCGAGCTAGGGCGGTTTGTTCCACTTGGTGTAGGGTTTGGGGA 156 Query 127 GAATGTGT-TCCCAAACCTAATCAGGTTCCGTGGCTGATTCTATTCCCTGATCCAGCACA 185 || ||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 157 GACTGTGTCTCC-AAACCTAATCAGGTTCCGTGGCTAATTCTTTTCCCTGATCCAGCACA 215 Query 186 AACCAGACGCAGTTGCATGTTGTACAATCCGCAGGAAGAAGAAAACGTTTACACAATTCA 245 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 216 AATCAGACGCAGTTGCATGTTGTACAATCCACAGGAAGAAGAAAACGTTTACACAATTCA 275 Query 246 AGATCTTGGTGTGGATCCTTGCCTGGCAAGTTGCGGCACCTGGCTCCTC 294 ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 276 AGACCTTGGTGTGGATCCTTGCCTTGCAAGTTGCGGCACCTGGCTCCTC 324 Score = 237 bits (128), Expect = 1e-61 Identities = 154/166 (93%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 297 CAAAGCCGAGATGATTGGG-TACCCT-GCTACTGATAAGGCAGTTGTGTGGATAGACGAG 354 |||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||||| Sbjct 366 CAAAGCCGAGATGA-TGGGATACCCTAG-TACTGATAAGGCAGTTGTGTGGATAGACGAG 423 Query 355 AAAACTAAAGACTACGTAGTTGCTTGTAGTTGGGGTGCACACAGGCATACGGCCTTTTGC 414 |||||||||||||||||||||||||| || ||||||| | ||| |||| | ||||||||| Sbjct 424 AAAACTAAAGACTACGTAGTTGCTTGCAGCTGGGGTGGAGACAAGCATGCAGCCTTTTGC 483 Query 415 AAGAAAGGAGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 460 |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 484 AAGAAAGGCGATTGTGAATGGCGCCAGATTCCTCCTTTGTTGGGGT 529 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41091532246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5