BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488249
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14170.1 | Symbols: CHC1 | SWIB/MDM2 domain superfamily prot... 3024 0.0
> AT5G14170.1 | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein
| chr5:4568509-4570947 REVERSE LENGTH=1886
Length=1886
Score = 3024 bits (1637), Expect = 0.0
Identities = 1748/1802 (97%), Gaps = 5/1802 (0%)
Strand=Plus/Plus
Query 1 CAGGCTGATAGGTTTATATAGCAATGTCGGGTAACAACAACAATCCACAAAAGCCTCAAG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 72 CAGGCTGATAGGTTTATATAGCAATGTCTGGTAACAACAACAATCCACAAAAGCCTCAAG 131
Query 61 GCTCTGCGCCTTCGCCTTTTGGTAATCCTGGGATGGCCTCTGCATCTGTTCCTGGAAACC 120
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 132 GCTCTGCGCCTTTGCCTTTTGGGAATCCTGGGATGGCCTCTGCATCTGTTCCTGGAAACC 191
Query 121 AAGGCTTTGCTCAGTCTCAAATGGCAGCTAACTTTCAAGCTCAGTTTCAGTTCTCACAAG 180
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 192 AAGGTTTTGCTCAGTCTCATATGGCAGCTAACTTTCAAGCTCAGTTTCAGTTCTCTCAAG 251
Query 181 CTCAAGCCCTAGCCCATGCTCAAGCACAGTCTAAAGTTCAAGCACAACTGCAAGCTCAGT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCAGGCCCTAGCCCATGCTCAAGCACAGTCTAAAGTTCAAGCACAACTGCAAGCTCAGT 311
Query 241 TACAAGCTCAAGGCATGACGATGAATCAAGCACAAGGTTCCCCTGGGATTGCTGGGTTGG 300
||||||||||||||||||||||||| |||||||||||||| || ||||||| ||| ||||
Sbjct 312 TACAAGCTCAAGGCATGACGATGAACCAAGCACAAGGTTCTCCGGGGATTGGTGGCTTGG 371
Query 301 GTCCTTCTTCTCCTTCTTTGACGACTCCTGGAAGTTTAAACATGAAGAGGTTTCAGCAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 372 GTCCTTCTTCTCCTTCTTTGACGACTCCTGGAAGTTTAAACATGAAGAGATTCCAGCAGA 431
Query 361 AACCGCCGATGCGACCTCCTGGTGCTCCTGCGAGTAACAATACTATCTCCCCCATGAGAA 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 432 AACCGCCGATGCGACCTCCTGGTGCTCCTGCGAGTAACAACACTATCTCCCCAATGAGAA 491
Query 421 CAATGGAGTTAACTCCTGCTGCGCGGAAAAAGAAACAGAAGCTTCCAGAAAAGTCGTTGC 480
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 492 CAATGGAGTTAACTCCTGCTGCTCGGAAAAAGAAACAAAAGCTTCCAGAAAAGTCATTGC 551
Query 481 AGGAGCGGGTGGCTGCAATCTTGCCAGAGTCTGCCTTATACACACAACTTCTGGAGTTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AGGAGCGGGTGGCTGCAATCTTGCCAGAGTCTGCCTTATACACACAACTTCTGGAGTTTG 611
Query 541 AGTCTCGTGTCGATGCTGCATTAACTAGAAAGAAAGTTGACATCCAGGAAGCCCTTAAAA 600
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AGTCTCGGGTTGATGCTGCGTTAACTAGAAAGAAAGTTGACATCCAGGAAGCCCTTAAAA 671
Query 601 ACCCTCCCTGCATACAGAAGACTCTTAGGATCTACGTTTTCAACTCGTTTGCTAACCAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ACCCTCCCTGCATACAGAAGACTCTTAGGATCTACGTTTTCAACTCGTTTGCTAACCAAA 731
Query 661 ACAACACGATCCCTGGGAATCCTAACGCTGACCCGCCAACATGGACTCTTAAAATTATTG 720
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 732 ACAACACGATCCCTGGGAATCCTAATGCTGACCCGCCAACATGGACTCTTAAAATTATTG 791
Query 721 GTAGGATCCTGGAAGATGGGGTGGATCCCGACCAGCCAGGATTTGTTCAGAAAGCAAACC 780
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 792 GTAGGATACTGGAAGATGGGGTGGATCCCGACCAGCCAGGGTTTGTTCAGAAAGCAAACC 851
Query 781 CATTGCATCCCAAATTCTCATCTTTCTTCAAAAGGGTTACAGTTTCCCTGGATCAGAGGC 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CATTGCATCCCAAATTCTCGTCTTTCTTCAAAAGGGTTACAGTTTCCCTGGATCAGAGGC 911
Query 841 TGTACCCTGAGAACCCATTGATCATATGGGAGAATGCTCGATCACCTGCTCCTCAGGAAG 900
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGTATCCTGAGAACCCATTGATCATATGGGAGAATGCTCGATCACCTGCTCCTCAGGAAG 971
Query 901 GGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTAGTATACGGTTGGAGATGA 960
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 972 GCTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCTGCTAGTATACGGTTGGAGATGA 1031
Query 961 ACTACGTCCCTGAAAAGTTTAAGCTTTCTACTGCATTGATGGATGTTCTTGGGATTGAGG 1020
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1032 ACTACGTCCCTGAAAAGTTCAAGCTTTCTACTGCATTGATGGATGTTCTCGGGATTGAGG 1091
Query 1021 TTGAAACCCGCCCAAGAATCATCGCTGCAATTTGGCATTACGTTAAGGCGAGGAAATTGC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1092 TTGAAACCCGCCCAAGAATCATCGCTGCAATTTGGCATTACGTTAAGGCGAGGAAACTGC 1151
Query 1081 AGAACCCAAATGACCCCTCTTTCTTCAACTGTGATGCTGCACTTCAGAAAGTTTTTGGGG 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1152 AGAACCCAAATGACCCCTCTTTCTTCAACTGTGATGCTGCACTTCAGAAAGTTTTTGGAG 1211
Query 1141 AAGAAAAGTTGAAATTCACTATGGTCTCTCAGAAAATATCTCATCACTTGTCGCCTCCAC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 AAGAAAAGTTGAAATTCACTATGGTCTCTCAGAAAATATCTCATCACTTGTCGCCTCCAC 1271
Query 1201 CACCTATTCACTTGGAACACAAAATCAAGCTCTCAGGAAATAATCCGGCCGTATCGGCAT 1260
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 CACCTATTCACTTAGAACACAAAATCAAGCTCTCAGGAAATAATCCGGCCGTATCAGCAT 1331
Query 1261 GCTATGATGTGCTAGTGGACGTACCCTTCCCGATCCAAAGGGATCTGAACAATTTGCTAG 1320
| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1332 GTTACGATGTGCTAGTGGATGTACCCTTCCCGATCCAAAGAGATCTGAACAATTTGCTAG 1391
Query 1321 CCAACGCAGAGAAGAACAAAGAGATTGAGGCTTGTGATGAAGCAATATGTGCAGCCATAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 CCAACGCAGAGAAGAACAAAGAGATTGAGGCTTGTGATGAAGCAATATGTGCAGCCATAA 1451
Query 1381 GGAAAATCCATGAGCATAGGAGGAGGCGGGCATTTTTCTTGGGGTTCAGCCAATCGCCAG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 GGAAAATCCATGAGCATAGGAGGAGGCGGGCATTTTTCTTGGGGTTCAGCCAATCGCCAG 1511
Query 1441 TTGAATTCATAAACGCCCTGATCGAATCTCAGAGCAAGGATCTGAAGGTTGTAGCGGGAG 1500
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1512 TTGAATTCATAAACGCCCTGATCGAATCTCAGAGCAAGGATCTAAAGGTCGTTGCGGGAG 1571
Query 1501 AAGCCAGTCGAAATGCTGAGAGGGAACGTCGATCGGACTTCTTCAACCAACCTTGGGTCG 1560
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1572 AAGCCAGTCGAAATGCTGAGAGAGAACGTCGATCAGACTTCTTCAACCAACCTTGGGTCG 1631
Query 1561 AAGATGCAGTTATACGTTACTTGAACCGGAGGCCAGCAGCTGGGAACGATGGGCCAGGGA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AAGATGCAGTTATACGTTACTTGAACCGGAGGCCAGCAGCTGGGAACGATGGGCCAGGGA 1691
Query 1621 GTTGGTGAGTTTCTTGA---TACAAGTCTCTTCATCTGTTTGAGCATTTTTAGAAGAAGA 1677
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1692 GTTGGTGAGTTTCTTGACGATACAAGTCTCTTCATCTGTTTGAGCATTTTTAGTAGAAGA 1751
Query 1678 TATTGTTGAGATCAGTCTGGTTTAAAAGGGACCTAGTGTATCTGTAATCTTGTGTATGTT 1737
|||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1752 TATTGTTGAGATTAGTCTGGTTTAAAAGTGAACTAGTGTATCTGTAATCTTGTGTATGTT 1811
Query 1738 GAAACATTA-TGACTTTATATAATTAGCTTTGTTTTGTAGCCTTTGCTTTAATGGTTAAG 1796
||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1812 GAAACATTACT-ACTTTATATAATTAGCTTTGTTTTGTAGCCTTTGCGTTAATGGTTAAG 1870
Query 1797 TC 1798
||
Sbjct 1871 TC 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88955365740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5