BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488256
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14220.1 | Symbols: HEMG2, MEE61, PPO2 | Flavin containing a... 2551 0.0
> AT5G14220.1 | Symbols: HEMG2, MEE61, PPO2 | Flavin containing
amine oxidoreductase family | chr5:4583269-4587427 REVERSE
LENGTH=1822
Length=1822
Score = 2551 bits (1381), Expect = 0.0
Identities = 1662/1788 (93%), Gaps = 58/1788 (3%)
Strand=Plus/Plus
Query 47 TTGCAGCTAGCAATGGAGTCTGGAGCAGTAGCTGATCATGATACAAAATTTGAATCGATT 106
|||||| ||||||||| ||||||||||||||| |||| || | ||| ||||| || ||
Sbjct 47 TTGCAGATAGCAATGGCGTCTGGAGCAGTAGCAGATC---AT-C-AAA-TTGAAGCGGTT 100
Query 107 TCCGGGAAAAGAGTCGCAGTAGTAGGTGCAGGTGTAAGTGGTCTTGCGGCGGCTTACAAA 166
|| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 101 TCAGGAAAAAGAGTCGCAGTCGTAGGTGCAGGTGTAAGTGGACTTGCGGCGGCTTACAAG 160
Query 167 TTGAAATCGAGGGGTTTAAATGTGACTGTGTTTGAAGCTGATGAAAGA-TCAGGTGGGAA 225
||||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||
Sbjct 161 TTGAAATCGAGGGGTTTGAATGTGACTGTGTTTGAAGCTGATGGAAGAGT-AGGTGGGAA 219
Query 226 GTTGACAAGTGTTATGCAAAATGGCTTGATTTGGGACCAAGGAGCAAACACCATGACTGA 285
||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 220 GTTGAGAAGTGTTATGCAAAATGGTTTGATTTGGGATGAAGGAGCAAACACCATGACTGA 279
Query 286 GGCTGAGCCAGAAGTTGGGAGTTTGCTCGATGATCTTGGGCTTCGTGACAAACAACAATT 345
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 280 GGCTGAGCCAGAAGTTGGGAGTTTACTTGATGATCTTGGGCTTCGTGAGAAACAACAATT 339
Query 346 TCCAATTTCACAGAAAAAGCGGTATATTGTGCGGAATGGTGTGCCTGTGATGCTACCTAC 405
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 340 TCCAATTTCACAGAAAAAGCGGTATATTGTGCGGAATGGTGTACCTGTGATGCTACCTAC 399
Query 406 CAATCCCATAGAGTTGGTCACAAGTAGTGTACTCTCTACCCAAGCTAAGATTCAAATCTT 465
||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 400 CAATCCCATAGAGCTGGTCACAAGTAGTGTGCTCTCTACCCAATCTAAGTTTCAAATCTT 459
Query 466 GTTGGAACCATTTCTT-TGGAAGAAAAATGACTCGTCCTCAAAAGTCTCAGATGCATCTG 524
||||||||||||| || |||||| |||| | ||||||||||||||||||||||||||
Sbjct 460 GTTGGAACCATTT-TTATGGAAG-AAAA--A---GTCCTCAAAAGTCTCAGATGCATCTG 512
Query 525 CTGAAGAAAGTGTAAGTGGGTTCTTTCAACGCCATTTTGGACAAGAGGTTGTGGACTATC 584
|||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct 513 CTGAAGAAAGTGTAAGCGAGTTCTTTCAACGCCATTTTGGACAAGAGGTTGTTGACTATC 572
Query 585 TCATCGACCCTTTTGTTGGTGGAACAAGTGCTGCGGACCCTGATTCCCTTTCAATGAAGC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TCATCGACCCTTTTGTTGGTGGAACAAGTGCTGCGGACCCTGATTCCCTTTCAATGAAGC 632
Query 645 ATTCTTTTCCAGATCTCTGGAATGTAGAGAAAAGTTTTGGCTCTATTATAGTCGGTGCAA 704
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 ATTCTTTCCCAGATCTCTGGAATGTAGAGAAAAGTTTTGGCTCTATTATAGTCGGTGCAA 692
Query 705 TCAGAACAAAGTTGGCTGCTAAAGGTGGTAAAAGTGGAGA-AGCAAAGAGTTCTCCTGGC 763
||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 693 TCAGAACAAAGTTTGCTGCTAAAGGTGGTAAAAGTAGAGACA-CAAAGAGTTCTCCTGGC 751
Query 764 ACAAAAAGGGGTTCGCGCGGGTCATTCTCTTTTAAGGGGGGAATGCAGATTCTTCCTGAT 823
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 ACAAAAAAGGGTTCGCGTGGGTCATTCTCTTTTAAGGGGGGAATGCAGATTCTTCCTGAT 811
Query 824 ATGTTGTGCAAAAGTCTCTCACATGATGAGATCAATTTAGACTCCAAGGTTCTCTCTTTG 883
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 812 ACGTTGTGCAAAAGTCTCTCACATGATGAGATCAATTTAGACTCCAAGGTACTCTCTTTG 871
Query 884 TCTTACAATTCTGGATCAAGACAGGAGAACTGGTCACTATCTTGTGTTTCACATAATGAA 943
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 872 TCTTACAATTCTGGATCAAGACAGGAGAACTGGTCATTATCTTGTGTTTCGCATAATGAA 931
Query 944 ACGCAGAGACAAAACCTCCATTATGATGCTGTAGTTATGACGGCTCCTCTGTGCAATGTG 1003
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 932 ACGCAGAGACAAAACCCCCATTATGATGCTGTAATTATGACGGCTCCTCTGTGCAATGTG 991
Query 1004 AAGGAAATGAAGGTTACGAAAGGAGGGCAACCCTTTCTGCTAAACTTTCTCCCCGAGATT 1063
||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 992 AAGGAGATGAAGGTTATGAAAGGAGGACAACCCTTTCAGCTAAACTTTCTCCCCGAGATT 1051
Query 1064 AATTACATGCCCCTCTCGGTTTTAATCACCACATTCACAAAGGAGAAAGTAAAGAGACCT 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 AATTACATGCCCCTCTCGGTTTTAATCACCACATTCACAAAGGAGAAAGTAAAGAGACCT 1111
Query 1124 CTTGAAGGCTTTGGGGTACTTATTCCATCTAAGGAGCAAAAGCATGGTTTCAAAACTCTA 1183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CTTGAAGGCTTTGGGGTACTCATTCCATCTAAGGAGCAAAAGCATGGTTTCAAAACTCTA 1171
Query 1184 GGTACACTCTTCTCATCAATGATGTTTCCAGATCGTTGCCCTAGTGACCTTCATCTATAT 1243
|||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1172 GGTACACTTTTTTCATCAATGATGTTTCCAGATCGTTCCCCTAGTGACGTTCATCTATAT 1231
Query 1244 ACAACTTTTATTGGTGGGAGTAGGAACCAGGAACTGGCCAAAGCTTCCACAGACGAATTA 1303
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1232 ACAACTTTTATTGGTGGGAGTAGGAACCAGGAACTAGCCAAAGCTTCCACTGACGAATTA 1291
Query 1304 AAACAAGTTGTGACTTCTGACCTTCAGCGACTGTTGGGGGTTGAAGGTGAACCCGTGTCT 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AAACAAGTTGTGACTTCTGACCTTCAGCGACTGTTGGGGGTTGAAGGTGAACCCGTGTCT 1351
Query 1364 GTCAACCATTACTATTGGAGGAAAGCATTCCCGTTGTATGACAGCAGCTATGGCTCAGTC 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1352 GTCAACCATTACTATTGGAGGAAAGCATTCCCGTTGTATGACAGCAGCTATGACTCAGTC 1411
Query 1424 ATGGAAGCAATTGACAAGATGGAGAAAGATCTACCCGGGTTCTTCTACGCAGGTAATCAT 1483
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1412 ATGGAAGCAATTGACAAGATGGAGAATGATCTACCTGGGTTCTTCTATGCAGGTAATCAT 1471
Query 1484 CGAGGCGGGCTCTCTGTTGGGAAATCAATAGCATCAGGTTGCAAAGCAGCTGATCTTGTG 1543
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1472 CGAGGGGGGCTCTCTGTTGGGAAATCAATAGCATCAGGTTGCAAAGCAGCTGACCTTGTG 1531
Query 1544 ATCTCATACCTGGAGTCTTGCTCAAATGACAAGAAACCAGATGAGAGCTTATGAACATTG 1603
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 1532 ATCTCATACCTGGAGTCTTGCTCAAATGACAAGAAACCAAATGACAGCTTAT-AACATTG 1590
Query 1604 TCAAGGTTCGTCCCTTTTTATCACTTAATTTGTAAA-----A---TGCAAT--------- 1646
||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1591 TCAAGGTTCGTCCCTTTTTATCACTTACTTTGTAAACTTGTAAAATGCAACAAGCCGCCG 1650
Query 1647 TGCGATTAGCCAACAAACTCAGCAAAACCC---T-C--A-----CT-A--A-TTCTAGCA 1691
|||||||||||||||| ||||||||||||| | | | || | | ||| || |
Sbjct 1651 TGCGATTAGCCAACAA-CTCAGCAAAACCCAGATTCTCATAAGGCTCACTAATTCCAGAA 1709
Query 1692 TAAACTATCCATGTATTGTTTGGTCTGTTTTCTTGTTGCATCACTGGTCTG-TCC-TC-- 1747
|||||||| |||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1710 TAAACTATTTATGTATTGTTTGGTCTGTTTTCTTGTTGCATCACTGGTATGGTCTGTCTA 1769
Query 1748 GGTAGAAGAACATGATCG--TGAGAGATTTTAGGATTGAAGAATCTTT 1793
|||||||||| ||||| | |||| |||||||||||||||||||||||
Sbjct 1770 GGTAGAAGAATATGATAGGGTGAGGGATTTTAGGATTGAAGAATCTTT 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88704363015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5