BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488257
Length=2601
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14230.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin r... 4037 0.0
> AT5G14230.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin
repeat-containing domain (InterPro:IPR020683), Ankyrin repeat
(InterPro:IPR002110); BEST Arabidopsis thaliana protein match
is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1);
Has 66374 Blast hits to 25358 proteins in 1201 species:
Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi -
5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571
(source: NCBI BLink). | chr5:4591741-4595964 FORWARD LENGTH=2587
Length=2587
Score = 4037 bits (2186), Expect = 0.0
Identities = 2468/2604 (95%), Gaps = 20/2604 (1%)
Strand=Plus/Plus
Query 1 GGCGCTCACTTCTTTTCAAGTCTCCCTtctctctctcttctctcGAGCCTCGCGTCTGTG 60
|||||||||||||||||||| | | ||||||| || ||||||||||||||||||||||
Sbjct 1 GGCGCTCACTTCTTTTCAAG--T--C-TCTCTCT-TC-TCTCTCGAGCCTCGCGTCTGTG 53
Query 61 TAAAGAGACAAAACCGATTCTCTAAAGCGGCGACGTTTTAGAACATTCGGTCAACGACTT 120
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 54 TAAAGAGACAAAACATATTCTCTAAAGCGGCGACGTTTAAGAACATTCGGTCAACGACTT 113
Query 121 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAAACAAGTCGTTC 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 114 ACGGCGGCGTTGGAATCAAAACTCCGACAATGACGGTTTTCTCCGGCAGACAAGTCGTTC 173
Query 181 CGATGGATTACGAAGCCGAGGTTTCACAACGGCTTCTAGAAGCTATCCTCGACGGAGATT 240
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 174 CGATGGATTACGAAGCCGAGGTATCACAACGGCTTCTAGAAGCCATCCTCGACGGAGATT 233
Query 241 TCAAAACGGCATCGGAGTGCGTCTCCGATCCACTCGTCGACGTGAATTTCGTCGGCGCCG 300
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 234 TCAAAACGGCATCGGATTGCGTCTCCGATCCACTCGTCGACGTTAATTTCGTCGGCGCCG 293
Query 301 TCAGCTTAAAGACGAGGAGGATCGAGGTCGTCCTCCGTGATGAATCCCCCAGCGAAGTCC 360
|||||||||| || ||||||| ||| ||||||||||||||||| || |||||||||||||
Sbjct 294 TCAGCTTAAAAACAAGGAGGAGCGAAGTCGTCCTCCGTGATGAGTCTCCCAGCGAAGTCC 353
Query 361 GAGTCGAGTACGAAGAATTCAAAACCGGTGTAACGGCGTTATTCCTCGCCGTTAATTTCG 420
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 354 GCGTCGAGTACGAAGAATTCAAAACCGATGTAACGGCGTTATTCCTCGCCGTTAATTTCG 413
Query 421 GAAACGTAGCTCTCGTGAAGGAATTATTGAACATTGGAGCTGATGTGAACCAGAAGCTTT 480
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 414 GAAACGCAGCTCTCGTGAAGGAATTACTGAACATTGGAGCTGATGTGAACCAGAAGCTCT 473
Query 481 TCAGGGGATTTGCAACAACTGTAGCTGTAAGGGAAGGTCATTTTGATGTATTTGAGATTC 540
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 474 TCAGGGGATTTGCAACAACTGTTGCTGTAAGGGAAGGTCATTTCGATGTCTTTGAGATTC 533
Query 541 TACTCAAAGCCGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TACTCAAAGCTGGTGCTTCTCAGCCCGCTTGTGAAGAAGCTCTAGTAGGGGCGAGCTGTC 593
Query 601 ACGGACGCTCGAGGTTCGCTGAGCTGCTCATGGGAACTGATCTTATTCGGCCTCATGTCG 660
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || |
Sbjct 594 ACGGACGCTCGAGGTTCGTTGAGCTGCTTATGGGAACTGATCTTATTCGGCCTCAGGTTG 653
Query 661 CTGTCCATGCTCTAGCCACTGCTTGTTGCAGAGGTTTTGTGGACGTTGTAGGGGCCTTGC 720
|||| |||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 654 CTGTGCATGCTCTCGCCACTGCTTGTTGCAGGGGTTTTGTGGACGTCGTAGGGACCTTGC 713
Query 721 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCAAAACCTT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 714 TCAAATGTGGTGTAGATGCTAATTCAACCGATAGGCTTCTTCTTCAATCTTCGAAACCTT 773
Query 781 CTCTTTACACAAATGTGGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTCTTTACACAAATGTAGACTGTACAGCTCTTGTTGCTGCCATTGTCAATAGGCAAGTCT 833
Query 841 CTGCTGTCCGCGTGCTACTACAGGCTGGTGTCAAGACAGATATCATGGTGAGGCTTGGAG 900
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 834 CTGCTGTCCGCGTCCTACTACAGGCTGGCGTCAAGACAGATATCATGGTGAGGCTTGGAG 893
Query 901 CATGGTCATGGGACACTAACACTGGAGAAGAGTTCCGGGTTGGAGCTGGAGTGGCTGAGC 960
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 894 CATGGTCATGGGATACTAACACTGGAGAAGAGTTTCGGGTGGGAGCTGGAGTGGCTGAGC 953
Query 961 CCTACCCTTTAATCTGGTGTGCTGTAGAATACTTTGAAACCAGTGGAGACATATTGCGTT 1020
|||| ||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 954 CCTATCCTTTAACCTGGTGTGCTGTAGAATACTTTGAAACTAGTGGCGACATTTTGCGTT 1013
Query 1021 TGTTGCTCAAAGTCCAGTCTCCAAACGCTCCTCACAACGGTCGGACTCTTCTACACCATG 1080
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1014 TGTTGCTCAAACTCCAGTCTCCAAACGCTCTTCACAACGGTCGGACTCTTCTACACCATG 1073
Query 1081 CCGTCCTTTGTGGCAACCAGGCAGCTGTCAGAGTCCTCCTTAACTGTGGCGCCGATCCAG 1140
| ||||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 1074 CTGTCCTCTGTGGCAACAAGGCAGCCGTCAGTGTCCTCCTTGACTGTGGCGCCGATCCAG 1133
Query 1141 AAGCTCCTATCAAAACTTCACGAGAAATTGAACTCAGACCGATTCATATTGCTGCACGTG 1200
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1134 AAGCTCCTATCAAAACTTCACGAGGCATTGAACTCAGACCGATTCATATTGCTGCACGTG 1193
Query 1201 ACGGATCAGTGGAGATCATACAACAACT-GCTTAGCTTTGGCTGCGATATAAACTCGAAG 1259
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1194 ACGGATCAGTGGAGATCATACAACAACTCG-TTGGCTTTGGCTGCGATATAAACTCGAAG 1252
Query 1260 AATGATGTGGGGAACACAGCCTTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTA 1319
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1253 AATGATGTAGGGAACACAGCCCTGTTGATCTCAATAAAACACAAACATCCAGAGTGCGTC 1312
Query 1320 AAGGTTCTCGCCCTTGCTGGTGCTGATTTCGGTGTCGTGAACAAGTTCGGCCATTCTGCT 1379
|||||||||||||||| |||||||||||||||| | ||||||||||| || |||||||||
Sbjct 1313 AAGGTTCTCGCCCTTGATGGTGCTGATTTCGGTTTAGTGAACAAGTTTGGTCATTCTGCT 1372
Query 1380 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAAAACGACTAATTCTTGAACTG 1439
||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||
Sbjct 1373 GTTTCGATCGCTGAGTCAAACAAGTGGTCTCTTGGATTAGAGCGAGTAATTCTTGAGCTG 1432
Query 1440 ATCCGGTTCGGTGGGGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAC 1499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATCCGGTTCGGTGTTGTTCCACATTCAAGCAACGCTTCAGTATTCTCGCCTTTGCTATAT 1492
Query 1500 GTGGCTCAAGCAGGAGATTCTGAGGCTCTTAAAGCTCTTGTAAAAACTCAAAACATCTAC 1559
| |||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||||||||
Sbjct 1493 GGGGCTCAAGCAGGAGATGCTGAGGCGCTTAAAGCGCTTGTAAAAGCTCAAGACATCTAC 1552
Query 1560 TTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCCGCCATGAATGGCCAC 1619
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1553 CTAGACTATCAAGATGAGGAAGGCTTTTCGGCTGCAATGCTAGCGGCCATGAATGGCCAC 1612
Query 1620 GTTGAAGCATTCAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAATTCT 1679
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1613 GTTGAAGCATTTAGAGTCTTAGTCTACGCAGGCGCAGACGTGAAGCTGTATAACAACTCT 1672
Query 1680 GGCGACACAGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1739
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 GGCGACACGGTAGTCTCTCTGTCTGAACAGAACGGTAACCGTGACGTGATAGAGAAGGTG 1732
Query 1740 ATGCTCGAGTTTGCTCTTGAGAAGGACAGCAGAAACATGGCAGGCGGGTTCTATGCTTTA 1799
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1733 ATGCTCGAGTTTGCTCTCGAGAAGGACAGCAGAAACATGGCAGGCGGGTTTTATGCTTTA 1792
Query 1800 CACTATGCTGCACGGCGTGGAGACGTCAAAGCAGTGAATCTTTTGAGTGGAAAAGGATAC 1859
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1793 CACTGTGCTGCACGGCGTGGAGACGTCAAAGCAGTGAAGCTTTTGAGTGGAAAAGGATAC 1852
Query 1860 AGTTTGGACATACCGGATGGAGATGGCTACACTCCGCTCATGCTTGCTGCCATAGAGGGC 1919
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1853 AGTCTAGACATCCCGGATGGAGATGGCTACACTCCGCTCATGCTTGCAGCCAGAGAGGGC 1912
Query 1920 CATGGACATATGTGTGAATACCTAATCTCCCGTGGCGCAAACTGCAGTGTTAAGAACGGA 1979
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1913 CATGGACATATGTGTGAATACCTAATCTCCTGTGGCGCAAACTGCAATGCTAAGAACGGA 1972
Query 1980 AGAGGGGAAACA-CTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2038
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 AGAGGGGAAA-AGCTGCTGGATCTCGCGACTGGTGATGCGGAGAAGGTGATCCGTAATGA 2031
Query 2039 GTTGTCTCGGAGGTTTGTGATA-ACAGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2097
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2032 GTTGTCTCGGAGGTTTGTGATAGA-AGGAAGCAGTGTGATGAAACACACCAAGGGAGGGA 2090
Query 2098 AAGGGAAGAAGCATGGGAAGGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2157
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AAGGAAAGAAGCATGGGAAAGGATTGAGAATGTTGGAATCAAGTGGAGTACTAAGTTGGG 2150
Query 2158 GAAAGTCCCGGAAGAGAAATGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2217
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 GAAAGTCACGGAAGAGGACTGTGGTGTGCAAGGAAGTAGAGATCGGGATGAGCCAGCGGT 2210
Query 2218 TCAGGAAGAACCGTAAGGGGAAAGGCGTTGGAGCGGAAGAGGAAGAAGGGATTTTCCGGG 2277
||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||
Sbjct 2211 TCAGGAAGAACCGTAAGGGGAAAGGCGATGGAGCGGAGGAGGAAG--GG-ATTTTCCGGG 2267
Query 2278 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGCGAAGGTGGGTTGGTGTGTGCAG 2337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2268 TAGTGACTACGGAAAACAAGGAGGTTCATTTTGTGTGTGAAGGTGGGTTGGTGTGTGCAG 2327
Query 2338 AGATGTGGGTGAGGGGAATAAGACTTGTGACCAGAGAGACTATTTGTGGGAGAACTCAGA 2397
|||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct 2328 AGATGTGGGTGAGGGGAATACGACTTGTGACCAGAGAGACAATTTGTGGAAGAACTCAGA 2387
Query 2398 CTCAGGATTAGAGTGTTGTTTTTGTATGTATATAAAGAAGTTTTGAGAAAGTGAGCTTCA 2457
||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 2388 CTCAGAATTAG--TGTTGTTTATGTATGTATATAAAGAAGTTTTGAGAAAGGGAGCTTCA 2445
Query 2458 TTTTGAAGGTAGTGTTCTTCTGTCGTGTTGGGGGTGTTTATAGTTGTTGGGTTTGATATC 2517
||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||| ||||
Sbjct 2446 TTTTGAAGGTAGTGTGCTTCTATTGTGTTGGGGATGTTTATAGTTCTTGGGTTTGGTATC 2505
Query 2518 TGGAGTATATTTTGTGAACTGTGAAGTAGTTCGAGTTGCATATGAATGAAAAACTAAAAC 2577
|| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2506 TGCAGTATATTT-GTGAACTGTGAAGTAGTTCGAGTTGCACATGAATGAAAA-CTAAAAC 2563
Query 2578 ATCCCAGTTGATTTGAGATTCTCC 2601
||| ||||||||||||||||||||
Sbjct 2564 ATCTCAGTTGATTTGAGATTCTCC 2587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129129711282
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5