BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488258
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14240.1 | Symbols: | Thioredoxin superfamily protein | chr... 1899 0.0
> AT5G14240.1 | Symbols: | Thioredoxin superfamily protein | chr5:4595928-4597660
REVERSE LENGTH=1158
Length=1158
Score = 1899 bits (1028), Expect = 0.0
Identities = 1117/1160 (96%), Gaps = 5/1160 (0%)
Strand=Plus/Plus
Query 1 GAGATTGCGATCACAGAGTGTCAAAGCAATCTCCTTTTTTCTCATCTCAGATTCGAAGGT 60
|||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||
Sbjct 1 GAGATTGCGATCACAGAGTGTCAAAGCAATCTGC-TTTTTCTCCTCTCAGATTCAAAGGT 59
Query 61 TCTCTTTGAAGCTTCGTAGGTGGTTAAACTTTTCGATGGCGGACTATCATTTCGTGTACA 120
|||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||| |
Sbjct 60 TCTCTTTGAAGCTTCGTAGGTGGTTATAC-TTT-GATGGCGGATTATCATTTCGTGTATA 117
Query 121 AGGACGTTGAAGGAGCGTCGACTCAATGGGACGATATCCAGCGGAAATTGGGAAATCTAC 180
||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 118 AGGACATTGAAGGAGCGTCAACTCAATGGGATGATATCCAGCGGAAATTGGGGAATCTAC 177
Query 181 CGGAGAAGGCTCCGGCTTTCAAACCGCCAGCTTATACTCCGGCGGAAGACGAGTCTTCAG 240
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 178 CGGAGAAGGCTCCGGCTTTCAAACCTCCGGCGTATACTCCGGCGGAAGACGAGTCTTCAG 237
Query 241 CTCCTAAGGATCAGGCATGGTTTGATAAGAAGACAGAGGAAGAGCTTGAGGATCTTGAGG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 238 CTCCTAAGGATCAGGCATGGTTTGATAAGAAGACAGAGGAGGAGCTTGAGGATCTTGAGG 297
Query 301 ACGACAAAGATCTCGACGATGATCGCTTTCTCGAAGAATACAGGAAGAAGAGGTTGTCTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACGACAAAGATCTCGACGATGATCGCTTTCTCGAAGAATACAGGAAGAAGAGGTTGTCTG 357
Query 361 AGCTAAGAGAAGCTGCTAAAGTTAAAAGATATGGAACAGTGACTCCAATCTCGGGCTCTG 420
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 AGCTAAGAGAGGCTGCTAAAGTTAAAAGATATGGAACAGTGACTCCCATCTCGGGCTCTG 417
Query 421 ATTTCGTGCGGGAGGTTACGCAAGCTTCTGCTGAAGATTGGGTTGTTGTATGTCTCTACA 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 ATTTCGTGAGGGAGGTTACGCAAGCTTCTGCTGAAGATTGGGTTGTTGTATGTCTCTATA 477
Query 481 AAGATGGTTTTGCAGAGTGTGGTTTGCTATTGGGTTGTCTAGACGAATTGGCTAGCAGAT 540
|||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 478 AAGATGGTGTTGCAGAATGTAGTTTGCTATTGGGTTGTCTAGACGAATTGGGTAGTAGAT 537
Query 541 ACCCAGCAACAAAGTTCGTTAAGATCATATCTACTGATTGTATTCCGAACTACCCTGATT 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 538 ACCCAGCAACAAAGTTCGTTAAGATAATATCTACTGATTGTATTCCGAACTACCCTGATT 597
Query 601 GCAATCTTCCTACCTTGCTGGTGTACCACCATGGCGCCATTAAAGGAACTCATGTAGGCT 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 598 GCAATCTTCCTACCTTGCTGGTGTACCACCATGGCGCCATCAAAGGAACTCATGTAGGCT 657
Query 661 TGAAGAGCTTTGGCCGTAGGTGCACCCCAGAGAGTGTAGCCTTACTTCTGTGTCAATCAG 720
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TAAAGAGCTTTGGCCGTAGGTGCACCCCAGAGAGTGTAGCCTTACTTCTGTGTCAATCAG 717
Query 721 AGCCAGTTCTTAACGATGGCAAAGGAGGAGACGATGACTCCTCGAGGGAAGCTGTGATGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCCAGTTCTTAACGATGGCAAAGGAGGAGACGATGACTCCTCGAGGGAAGCTGTGATGG 777
Query 781 CTGGAGTTCGAAGACAGTTCATAGAACGAGTGGTGAAGGACCATGAAGATAAGGATAACG 840
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 CTGGAGTTCGAAGACAGTTCATAGAACGAGTGGTGAAGGACCACGAAGATAAGGATAACG 837
Query 841 ATGATGGTGGTTACAGTAGCGATTAGAACTTCAAAGCTTCTCTGTTTATCTCTGTTGGTT 900
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATGATGGTGGTTACAATAGTGATTAGAACTTCAAAGCTTCTCTGTTTATCTCTGTTGGTT 897
Query 901 ATTGCTTGTTGAGTTGGTGACCGGTAAACAAAAGTGCTGACTTCATGTGTGATGTAATGt 960
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 898 ATTGCTTGTTGAGTTGGTGACTGGTAAACAAAAGTGCTGACTTCTTGTGTGATGTAATGT 957
Query 961 tttttaaacattttgtaacttatgttctttttaaaagagacaggaacttcattttgtttt 1020
||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||
Sbjct 958 TTTTTAAACATTTTGTAACTTTTGTTCTTTTGAAA-GAGACAGGAACTTCATGTTGTTTT 1016
Query 1021 ttGATATCCAGGTATCACATGCCGAATTTTAGTGCTGGATCTAAGACTGTGAATCCATGT 1080
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 TTGATATCCAGGTATCACATGCCGAATTTTAGTGCTGGATCTAAGCCTGTGAATCCATGT 1076
Query 1081 AAGTTTAAAATAGTCTCTGTTTTGGACAAAGTAATAATCAA-TTTGGAGAATCGCAAATC 1139
||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1077 AAGTTTAGAATAGTCTTTGTTTTGGACAAAGTAATAATCAAATTTGGAGAATCTCAAATC 1136
Query 1140 AACTGAGATGTTTTAGTTTT 1159
||||||||||||||||||||
Sbjct 1137 AACTGAGATGTTTTAGTTTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5