BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488259
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14250.1 | Symbols: COP13, CSN3, FUS11 | Proteasome componen... 2398 0.0
> AT5G14250.1 | Symbols: COP13, CSN3, FUS11 | Proteasome component
(PCI) domain protein | chr5:4597878-4600761 FORWARD LENGTH=1582
Length=1582
Score = 2398 bits (1298), Expect = 0.0
Identities = 1471/1556 (95%), Gaps = 5/1556 (0%)
Strand=Plus/Plus
Query 1 ATAATTAAACAAACAGTTTGGCAAAAGATTTTGAGAGGGAGAAAAA-GGCGATCGATTAG 59
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 3 ATAATTAAACAAACAGTTTAGCAAAAGATTTTGAGAGGGAGAAAAAGGGCGATCGATTAG 62
Query 60 GGTTTTT-CGTTTTCGTCTGAATATTGAAGATGATCGGAGTTATGAACTCGGTGGAGGCT 118
||||||| |||||||||| | ||| |||||||||||||| | |||||||||||||||||
Sbjct 63 GGTTTTTGTGTTTTCGTCTTAGTATCGAAGATGATCGGAGCTGTGAACTCGGTGGAGGCT 122
Query 119 GTGATAACGTCAATCCAAGGTTTATCGGCGAGTTCAGAGGATTTATCCGCACTTCACGAT 178
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 123 GTGATAACGTCAATCCAAGGTTTATCGGGGAGTCCAGAGGATTTATCTGCACTTCACGAT 182
Query 179 CTTTTGAGAGGAGCTCAAGACTCGCTCCGAGCCGAACCAGATGTTAATTTCTCTATTCTT 238
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 183 CTTTTGAGAGGAGCTCAAGACTCGCTCCGAGCCGAACCAGGTGTTAATTTCTCTACTCTT 242
Query 239 GACCAGCTCGACGCCTCGAAGCACTCTCTCGGTTACCTGTACTTCCTTGAGGTTCTTACT 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 243 GACCAGCTCGACGCCTCGAAGCACTCTCTCGGTTACCTGTATTTCCTTGAGGTTCTTACC 302
Query 299 TGTGGTCCAGTTTCCAAGGAGAAAGCTTCTTATGAGATTCCGATAATTTCACGGTTCATC 358
||||||||||| || |||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 303 TGTGGTCCAGTGTCGAAGGAGAAAGCTGCTTATGAGATACCGATAATTGCACGGTTCATC 362
Query 359 AACTCTTGTGATGCTGGGCAGATTCGTTTGGCGAGCGATAAATTTGTATCTCTTTGTAAG 418
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 363 AATTCTTGTGATGCTGGGCAGATTCGTTTGGCGAGCTATAAATTTGTATCTCTTTGTAAG 422
Query 419 AGATTGAAAGAACATGTTTTAGAACTGAGAGATCCCTTGCGAGGGGTAGGGCCTCTGTTG 478
| ||||||||| |||||| ||| |||| ||||||| |||||||| |||||||| |||||
Sbjct 423 ATATTGAAAGACCATGTTATAGCACTGGGAGATCCGTTGCGAGGAGTAGGGCCACTGTTA 482
Query 479 ACCGCTGTTCAGAAGCTTCAGGTCTCCACCAAACGTTTGACTGCTTTGCATCCAGATCTT 538
| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||
Sbjct 483 AACGCTGTTCAGAAGCTTCAGGTCTCCTCCAAGCGTTTGACTGCATTGCATCCAGATGTT 542
Query 539 CTTCAACTCTGTTTGCAGGCGAAATCGTACAAATCTGGTTTCTCCATTCTTAGTGATGAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CTTCAACTCTGTTTGCAGGCGAAATCGTACAAATCTGGTTTCTCCATTCTTAGTGATGAT 602
Query 599 ATCGTGGAGGTTGACCAGCCAAGAGACTTATTTCTCTATTGCTATTATGGGGGAATGATA 658
||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 603 ATCGTGGAGATTGACCAGCCAAGAGACTTTTTTCTCTATAGCTATTATGGGGGAATGATT 662
Query 659 TGTATTGGACTGAAGAGATTTCAGAAAGCATTAGAGCTTCTTTACAATGTTGTGACTGCT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGTATTGGACTGAAGAGATTTCAGAAAGCATTAGAGCTTCTTTACAATGTTGTGACTGCT 722
Query 719 CCTATGCATCAAGTCAATGCCATAGCCCTTGAGGCGTACAAAAAGTTCATATTGGTGTCT 778
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 723 CCTATGCATCAAGTCAATGCCATAGCTCTTGAGGCGTACAAAAAGTACATATTGGTGTCT 782
Query 779 CTCATTCACAATGGGCAGTTTACTAACAGTCTCCCCAAGTGTGCTTCTACAGCAGCTCAG 838
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 783 CTCATTCACAATGGGCAGTTTACTAACACTCTCCCCAAGTGTGCTTCTACAGCAGCACAG 842
Query 839 AGGAACTTCAAGACCTTTTCCGGACCTTACATTGAACTGGGTAATTGTTACAACGACGGA 898
|||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 AGGAGCTTCAAGAACTATACCGGACCTTACATTGAACTGGGTAATTGTTACAACGACGGG 902
Query 899 AAGATTGGTGAACTTGAGGCATTGGTTGTGGCCAAGAGCGCAGAGTTTGAAAATGATAAG 958
|||||||||||||| ||||||||||||||||||| || ||||| |||||| | ||||||
Sbjct 903 AAGATTGGTGAACTAGAGGCATTGGTTGTGGCCAGGAATGCAGAATTTGAAGAGGATAAG 962
Query 959 AACCTTGGATTAGTTAAGCAAGCAGTGTCATCTCTTTACAAGCGTAACATTCTGAGATTG 1018
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 963 AACCTTGGATTAGTTAAGCAAGCAGTGTCATCCCTTTACAAGCGTAACATTCTGAGATTG 1022
Query 1019 ACACAGAAGTACTTGACCCTGTCGCTTCAAGATATAGCCAACATGGTCCAACTTGGTAAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACACAGAAGTACTTGACCCTGTCGCTTCAAGATATAGCCAACATGGTCCAACTTGGTAAT 1082
Query 1079 GCTAAGGAGGCGGAAATGCATGTGCTTCAGATGATCCAGGATGGTCAGATACATGCCCTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCTAAGGAGGCGGAAATGCATGTGCTTCAGATGATCCAGGATGGTCAGATACATGCCCTT 1142
Query 1139 ATCAACCAGAAAGACGGAATGGTCAGATTCTTGGAAGACCCTGAGCAGTACAAATCTAGT 1198
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1143 ATCAACCAGAAAGACGGGATGGTCAGATTCTTGGAGGACCCTGAGCAGTACAAATCTAGT 1202
Query 1199 GAGATGATCGAGGTCATGGATTCTGTTATACAAAGGACTATTGGGCTGTCGAAGAATCTC 1258
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1203 GAGATGATTGAGATCATGGATTCTGTTATACAAAGGACTATTGGTCTGTCGAAGAATCTC 1262
Query 1259 TTAGCCATGGATGAGAGCTTATCATGTGACCCTTTATACTTGGGAAAGGTTGGAAGGGAA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1263 TTAGCCATGGATGAGAGCTTATCATGTGACCCTTTATACTTGGGAAAGGTAGGAAGGGAA 1322
Query 1319 AGACAAAGGTATGACTTTGGAGACGATTTTGATACTGTCCCCCAGAAGTTCTCCATGTAA 1378
||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1323 AGACAAAGGTACGACTTTGGAGACGATTTCGATACTGTTCCTCAGAAGTTCTCCATGTAA 1382
Query 1379 ACAGCGGAAGACCAAAAGCACCAGCAAAACTTGGCTCAAAGACAACCGTAGTTGTGAATC 1438
|||||| ||| | | |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1383 ACAGCGAAAGTCGAGAAGCACCAACAAAACTTGGCTCAAAGACAACCGTAGT-GTGAATC 1441
Query 1439 TTGAGAATGTTTCTTCTGATTTCTTTGTTCATTTTTGTTGGTTTAAAAAGTTTCATATTT 1498
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 TTGAGAATGTTACTTTTGATTTCTTTGTTCATTTTTGTTGGTTTAAAAAGTTTCATATTT 1501
Query 1499 TTGTCACAATGGCCAACAAGTAGAGAAGAAGACCATT--CCCGCAAATCTTTTATT 1552
|||||||||| |||||||||||||||||| | || ||| |||||||||||||
Sbjct 1502 TTGTCACAATTGCCAACAAGTAGAGAAGACCATTATGGACCCTCAAATCTTTTATT 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5