BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488263
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14260.3 | Symbols: | Rubisco methyltransferase family prot... 2856 0.0
> AT5G14260.3 | Symbols: | Rubisco methyltransferase family protein
| chr5:4600996-4604447 FORWARD LENGTH=2067
Length=2067
Score = 2856 bits (1546), Expect = 0.0
Identities = 1713/1792 (96%), Gaps = 18/1792 (1%)
Strand=Plus/Plus
Query 1 GATTTCTTCATTTCCCTCTCTTATCCTCAATGaaaaaaaTAATCTGAGAAAACGCAAAAG 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTCTCCATTTCCCTCTCTTATCCTCAATGAAAAAAATAATCTGAGAAAACGCAAAAG 60
Query 61 AGGAACAGAGCAAAATCCTCAAAATCGCCGCCGGAGAATCTTTACGTTTCGACAGAAT-- 118
| |||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 61 AAGAACGGAGCAAAATCCTCAGAATCGTCGCCGGAGAATCTTTACGTTTCGACATAATCG 120
Query 119 --ATCTT-GAATTGATAATTCCGATGGAAGGGGTCATCACATGTTTCCATTCCAAATGCG 175
|| || |||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 121 GAATTTTGGAATTGATAATTCCGATGGAAGGGGTTATCACATGTTTCCATACGAAATGCG 180
Query 176 TCTCTCTTCCAATCCGTTCTTTCCCACTTTCTAGGGTTTCTTCACTTCCTCGGTGGAGGA 235
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCTCTTCCAATTCGTTCTTTCCCACTTTCTAGGGTTTCTTCACTTCCTCGGTGGAGGA 240
Query 236 ACACTAAATTGATCTCTTCATCGCGATCAGTTCCTCTAAGAAGCTTGTGCGTTTCGGCTT 295
||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 241 ACAATAAATTGATCTCTTCATCGCGATCGGTTCATCTAAGAAGCTTGTGCGTTTC-G--- 296
Query 296 CAAGCTCAGATACTTTAGTCGCGGGCGGTTCACCAAAGGAAGACGAAAGGCAGAGCAAAG 355
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 297 --AGCTCAGATACTTTAGTCGCGAGCGGTTCACCAAAGGAAGACGAGAGGCAGAGCAAAG 354
Query 356 TATCGAGCAAGAAGGAAGGAGATGACTCCGAGGATTTGAAGTTTTGGATGGATAAGAATG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TATCGAGCAAGAAGGAAGGAGATGACTCCGAGGATTTGAAGTTTTGGATGGATAAGAATG 414
Query 416 GGTTGCCACCTTGCAAGGTT-TTGCTCAAGGAGAGACCAGCTCATGATCAGAAGCATAAA 474
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 415 GGTTGCCACCTTGCAAGGTTATT-CTCAAGGAGAGACCAGCTCATGATCAGAAGCATAAA 473
Query 475 CCCATACATTATGTTGCTGCTAGTGAGGATCTTCAGAAAGGTGATGTGGCGTTTTCAGTT 534
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 474 CCTATACATTATGTTGCTGCTAGTGAGGATCTTCAGAAGGGTGATGTGGCGTTTTCAGTT 533
Query 535 CCTGATTCTTTGGTGGTCACTCTGGAAAGAGTTTTGGGAAACGAGACTATTGCTGAACTG 594
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CCTGATTCTCTGGTGGTTACTCTGGAAAGAGTTTTGGGAAACGAGACTATTGCTGAACTG 593
Query 595 TTGACAACGAACAAATTGTCTGAATTGGCTTGCCTAGCTTTGTATTTGATGTATGAGAAG 654
||||| ||||||||||| || ||| ||||||| |||||||||||||||||||||||||||
Sbjct 594 TTGACGACGAACAAATTATCCGAACTGGCTTGTCTAGCTTTGTATTTGATGTATGAGAAG 653
Query 655 AAACAAGGGAAGAAATCAGTTTGGTATCCCTATATAAGAGAACTTGATCGTCAAAGAGGA 714
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 654 AAACAAGGAAAGAAATCAGTATGGTATCCCTATATAAGAGAACTTGATCGTCAAAGAGGA 713
Query 715 AGAGGTCAATTAGATGCGGAATCCCCGTTGCTGTGGTCAGAGGCTGAATTAGATTACCTA 774
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 714 AGAGGTCAGTTAGATGCGGAATCCCCTTTGCTGTGGTCAGAGGCTGAGTTAGATTACCTA 773
Query 775 ACTGGTAGTCCGACCAAGGCCGAAGTTCTTGAGAGGGCTGAAGGTATCAAAAGAGAATAC 834
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 ACTGGTAGTCCTACCAAGGCCGAAGTTCTTGAGAGGGCTGAAGGGATCAAAAGAGAATAC 833
Query 835 AATGAGCTTGACACTGTCTGGTTTATGGCTGGATCTTTGTTTCAGCAATACCCATTTGAC 894
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 834 AATGAGCTTGACACTGTCTGGTTCATGGCTGGATCTTTGTTTCAGCAATACCCATTTGAC 893
Query 895 ATACCAACTGAAGCTTTTTCATTTGAGATTTTCAAACAGGCATTTGTTGCTATTCAGTCC 954
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 894 ATACCAACTGAAGCTTTTTCATTTGAGATTTTCAAACAGGCATTTGTTGCCATTCAGTCA 953
Query 955 TGTGTGGTGCATTTACAAAATGTCGGTTTGGCTCGTCGGTTTGCTTTGGTTCCTCTTGGT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGTGTGGTGCATTTACAAAATGTCGGTTTGGCTCGTCGGTTTGCTTTGGTTCCTCTTGGT 1013
Query 1015 CCTCCCTTGTTGGCCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCTCCCTTGTTGGCCTATTGTTCCAACTGCAAGGCAATGCTTACTGCTGTTGATGGTGCT 1073
Query 1075 GTTGAGCTCGTGGTAGATAGGCCATATAAGGCTGGGGATCCTATAGTTGTCTGGTGTGGG 1134
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1074 GTTGAACTCGTGGTAGATAGGCCATATAAGGCCGGGGATCCTATAGTTGTCTGGTGTGGG 1133
Query 1135 CCACAACCTAATGCGAAATTGCTTCTGAACTATGGATTGGTTGATGAAGATAACCCTTAT 1194
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1134 CCACAACCAAATGCGAAATTGCTTCTGAACTATGGATTTGTTGATGAGGATAACCCTTAT 1193
Query 1195 GATAGAATAATAGTTGAGGCAGCATTGAACACTGAGGATCCTCAATATCAGGACAAGAGA 1254
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1194 GATAGAGTAATAGTTGAGGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGA 1253
Query 1255 ATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTTTTTCAGGTTCGTGTGGGAAAA 1314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1254 ATGGTTGCTCAAAGGAACGGAAAATTATCCCAACAAGTATTTCAGGTTCGTGTGGGAAAA 1313
Query 1315 GAAAGAGAAGCTGTCCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCT 1374
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAAAGAGAAGCTGTTCAAGACATGCTTCCCTACCTGCGGTTGGGTTACATGTCTGATCCT 1373
Query 1375 TCTGAAATGCAATCAGTAATTTCGTCCCAGGGTCCAGTTTGTCCGATGAGCCCCTGTATG 1434
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1374 TCTGAAATGCAGTCAGTAATTTCATCCCAAGGTCCAGTTTGTCCGATGAGCCCTTGTATG 1433
Query 1435 GAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GAAAGAGCAGTACTAGATCAGCTTGCTAATTACTTCATGAGACGGTTATCTGGCTACCCT 1493
Query 1495 ACTACTCCGAATGAAGATGATGCATTGTTGGCAGATCCTAGTTTGAGTCCTAGGAAGCGA 1554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ACTACTCCGAAAGAAGATGATGCATTGTTGGCAGATCCTAGTTTGAGTCCTAGGAAGCGA 1553
Query 1555 GTGGCAACCCGGCTTGTCCAATTGGAGAAGAAAATACTAGCTGCATGCCTTATGACGACA 1614
|| |||||||||||||||||| |||||||||||||||||| ||||||||||| ||| |||
Sbjct 1554 GTTGCAACCCGGCTTGTCCAACTGGAGAAGAAAATACTAGTTGCATGCCTTACGACAACA 1613
Query 1615 GTCGAT-TTGTTAAATCAGTTACCAGATACAGCCATCTCTCCATGCCCAGCACCATATGC 1673
|| ||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1614 GTTGATCTT-TTAAATCAGTTGCCCGATACAGCCATCTCTCCATGCCCAGCACCATATGC 1672
Query 1674 TCCTTCCTTGAAATAAAAAGGTTCGTGTTGTAGCTGCAATTTGTAGGACATGGCAGAAGT 1733
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1673 TCCTTCCTTGAAATAAAAAGGTTCGTGTTGTAGCTGCAATTTGTGGGACATGGCAGGAGT 1732
Query 1734 AATTTTTGGTCGTGTCCTTGATCATTACAATC-G-G-TCGCTTAACTATGGT 1782
|||||||||||||||||||||||||||||||| | | ||||||||||| |||
Sbjct 1733 AATTTTTGGTCGTGTCCTTGATCATTACAATCTGAGGTCGCTTAACTACGGT 1784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5