BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488264
Length=2472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal dom... 3179 0.0
AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extrate... 363 6e-99
> AT5G14270.2 | Symbols: BET9 | bromodomain and extraterminal domain
protein 9 | chr5:4604613-4608822 FORWARD LENGTH=2935
Length=2935
Score = 3179 bits (1721), Expect = 0.0
Identities = 2069/2237 (92%), Gaps = 24/2237 (1%)
Strand=Plus/Plus
Query 188 AAGTAAATCCGTCATACTAAGATGGTTT-GTTTCCTACAGGATTAGACTGATCCGGAGCT 246
||| ||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||
Sbjct 462 AAGCAAATCCGTCATAC-GAGAT-GTTTCGTTTCCTGCAGGATTAGACTGATCCGGAGCT 519
Query 247 CTACGCTAGAATAAGGGAATCTATTTAAGAATTTCATCGATATGACTGTGAGAAACGGTG 306
|| | | ||| ||||||||||||||| | |||||| |||||||||| | |||||||||||
Sbjct 520 CTTCACGAGATTAAGGGAATCTATTTCACAATTTCGTCGATATGACAGAGAGAAACGGTG 579
Query 307 GTTTCCCTGGAGATTATTGTTTTGAGGCACCCGGTGGAGATTACGATGAAGGATCTGATA 366
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 580 GTTTCCCTGGTGATTATTGTTTTGAGGCACCCGGTGGAGATTATGATGAAGGATCTGATA 639
Query 367 GTCCTAGTGCCTCTGAGGGTTCTAATTGTTCCAAAAGAAAGCTCGGTGAAACCTTTGGTG 426
|||| || | ||| |||||||| |||||||| ||||||||| ||||||||||||| ||||
Sbjct 640 GTCCGAGGGTCTCAGAGGGTTCCAATTGTTCAAAAAGAAAGGTCGGTGAAACCTTCGGTG 699
Query 427 TCTCGAAAATGGTATTACCCTTGTCTGGCCTGTCATCATCAGATAGGAAGGAGTTGATTC 486
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 700 TCTCGAAAATGGTATTACCCTTATCTGGCCTATCATCATCAGATAGGAAGGAGTTGATTC 759
Query 487 GTAGGCTAAGACAAGAGCTGGAACAGATACG-GTTTTTCCAGAAGAATTTCGAAATATCT 545
||||||||||||||||||||||||| ||||| | |||||||||||||||| || | |||
Sbjct 760 GTAGGCTAAGACAAGAGCTGGAACAAATACGAG-TTTTCCAGAAGAATTTTGAGCTTTCT 818
Query 546 AGATCAGTGACTCTCACTAGTTCTTCTGCAAGTGGTTTGACTCCAGCCAAGAGTTTTGGA 605
||| ||||| |||||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct 819 AGAACAGTGGCTCTCACTAGCTCTTCTGCTAGTGGTTTGACTCGAGTCAAGAGTTTTGGA 878
Query 606 AAGTCGCGATGCTCTACGGGTCCAGGGAAGACTGTGAATCCTCTAAGTGCTGCTGCTAAA 665
| ||||||||| || ||||||||||| ||||| ||||| ||| ||||||||||| |||||
Sbjct 879 ATGTCGCGATGTTCCACGGGTCCAGGAAAGACGGTGAACCCTATAAGTGCTGCTTCTAAA 938
Query 666 CCGACTCCTGTCACTACTGCGGTTATGCTTCTGATGAAGCAATGTGAGGCGCTCTTAAAA 725
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 939 CCGACTCCTGTCACTACTGCGGTTATGCTTCTGATGAAGCAATGCGAGGCGCTTTTGAAA 998
Query 726 CGATTGATGTCACATCAGTATGGTTGGGTGTTCAATACTCCAGTGGATGTTGTCAAGCTC 785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CGATTGATGTCACATCAGTATGGTTGGGTGTTCAATACTCCAGTGGATGTTGTCAAGCTG 1058
Query 786 AATATCCTGGACTATTTTAATGTTATTAAGCATCCAATGGATTTGGGAACTGTGAAGAAT 845
||||| ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1059 AATATACTGGACTATTTTAATGTTATTGAGCATCCTATGGATTTAGGAACTGTGAAGAAT 1118
Query 846 AAGTTAACTTCGGGTACTTATTCCTGTCCGTCAGAGTTTGCTGCTGATGTTCGGCTTACC 905
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 AAGTTAACTTCGGGGACATATTCCTGTCCGTCAGAGTTTGCTGCTGATGTTCGGCTTACC 1178
Query 906 TTCAGCAATGCAATGACGTATAATCCACCTGGTAATGATGTTTACGTCATGGCTGATACA 965
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1179 TTCAGCAATGCAATGACGTATAATCCACCTGGTAATGATGTTTATGTTATGGCTGATACA 1238
Query 966 CTTCGCAAGTTTTTTGAAGTGAGGTGGAAGACCCTCGAGAAGAAATTATCTGGAATTAAA 1025
||||| |||||||| |||||||||||||||||||| |||||||||||||| |||| ||||
Sbjct 1239 CTTCGTAAGTTTTTCGAAGTGAGGTGGAAGACCCTTGAGAAGAAATTATCCGGAACTAAA 1298
Query 1026 GTTCATACCGAACCGAGTAACTCAGATGCCCAGGAGGAAAAACATATTGTAATACCTGTG 1085
|||||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1299 GTTCATACTGAACCGAGTAACTTAGATGCCCATAAGGAAAAACATATCGTAATACCTGTG 1358
Query 1086 CCTATGGCTAAGAAAAGGAAGACAAGTGCAGTAGACTGTGAGAACGTC-TCAGAGCCTGT 1144
|||||||||||||| |||||||| | |||||||||||||||||| ||| | ||| ||||
Sbjct 1359 CCTATGGCTAAGAAGAGGAAGACCACTGCAGTAGACTGTGAGAATGTCGT-AGATCCTG- 1416
Query 1145 C-AAACGGGTTATGACTGATGAGGATAGACTCAAGCTCGGCAAGGATTTGGAGTCCTTGA 1203
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1417 CTAAACGGGTTATGACTGATGAGGATAGACTCAAGCTGGGCAAGGATTTGGAGTCCTTGA 1476
Query 1204 CTGAGTTCCCGGCACAATTAATAAATTTCTTGAGAGACCACAACTCAAATGAAGGGGGGA 1263
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1477 CTGAGTTCCCGGCACAATTAATAAATTTCTTGAGAGATCACAACTCAAATGAAGGAGGGA 1536
Query 1264 TTGGTGATGATGAGATTGAGATTGACATTAATGATCTCAGTCACCATGCCTTGTTTCAGT 1323
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1537 TTGGGGATGATGAGATTGAGATTGACATTAATGATCTCAGTGACCATGCCTTGTTTCAGT 1596
Query 1324 TGCGGGATCTCTTAGACGAGCATTTGCATGAGAGCCAAAACAAAAAATCAAGTGTTGAAC 1383
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1597 TGCGGGATCTCTTAGACGAGCATTTGCGTGAGATCCAAAACAAAAAATCAAGTGTTGAAC 1656
Query 1384 CCTGTGAGATAGAGCTTCTGCATGGATCAGTGCCAGGGAATTCATTAATGCAACATTGTG 1443
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1657 CCTGTGAGATAGAGCTTCTGCATGGATCAGTGCCAGGGAATTCATCAATGCAACATTGTG 1716
Query 1444 ATGGGAGTGAATTGGATGATGAGGTTGTTGACATTGGTGAAAATGAACACCCAAAATCAA 1503
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 1717 ATGGGAGTGAATTGGATGATGAAGTTGTTGACATTGGTGAAAATGAACACCCAACATCCA 1776
Query 1504 GCATTTCTCCTGTCACGATAGAGAAGGACCTGGTGTTAGGAAACTCTAATGGTATCTTTT 1563
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1777 GCATTTCTCCTGTCACGATAGAGAAGGATCTGGTGTTAGGAAACTCTAATGGTAA-TAG- 1834
Query 1564 CTTTT-ACTTGTTTATATTG-TCATAGTGTGTCAAGTTTACCGAGGACATCAAAGGGGCT 1621
||| | ||| | || || || ||||||||||||||||| |||||||||||||
Sbjct 1835 CTTGGGAAGTGTGTCCGGTGATCCTAAAATGTCAAGTTTACCGAGGGCATCAAAGGGGCT 1894
Query 1622 TGGAACCATGGATCTTGAACCTATGTTGGATGGAGCTACAAGCTCTTCCCCAACAAGAGG 1681
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1895 TGGAACCATCGATCTTGAACCTATGTTGGATGGAGCTACAAGCGCTTCCCCAACAAGAGG 1954
Query 1682 AT---CATCTGTTGGTGGATTGGATCAGCTGGAAAGTGCATCTCCGGAGAAAATAAGTTC 1738
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1955 ATTAGCATCTGTTGGTGGATTGGATCAGCTGGAAAGTGCATCTCCGGAGAAAATAAGTTC 2014
Query 1739 TGTTGAGGCGGATTGTCAGCAAGATGGAAATAGTGCTCAGACTGAGAAGCAACTACCTCC 1798
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 2015 TGTTGAGGCGGATTGTCAGCAAGATGGAAATAGTGCTCAGAATGAGAAGCAATTACCTCC 2074
Query 1799 TGAAAAGATCTACAGGGCTGCTTTTTTGAAGAATCGATTTGCAGACATAATTTTGAAAGC 1858
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 2075 TGAAAAGAGCTACAGGGCTGCTATTTTGAAGAACCGATTTGCAGACATAATTTTGAAAGC 2134
Query 1859 CCGAGAGAAACCTCTTAACCAGAATGACCCGCGAGACCCAGAGAAGCTCCAGCGTGAGAG 1918
|||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||
Sbjct 2135 CCGAGAGAAACCTCTTAACCAGAATGACACTCGAGATCCAGAGAAGCTGCAGCGTGAGAG 2194
Query 1919 AGAAGAACTCGAGCTTCAAAAGAAGAAAGAGAAAGCGCGATTACAAGCAGAAGCCAAGGC 1978
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2195 AGAAGAACTCGAGCTTCAAAAGAAGAAAGAGAAAGCGCGATTACAAGCAGAAGCTAAGGC 2254
Query 1979 AGCTGAAGAAGCTCGTAGAAAAGCTGAGGCACGAGCTGCAGCTGAAGCTGCGGCTGAGGC 2038
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2255 AGCTGAAGAAGCTCGTAGAAAAGCTGAGGCACAAGCTGCAGCTGAAGCTGCGGCTGAGGC 2314
Query 2039 TAAGAGAAAGCTGGAGCTTGAAAGAGAAGCAGCGCGCCAGGCATTGATGGAGATGGAACA 2098
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2315 TAAGAGAAAGCTGGAGCTTGAAAGAGAAGCAGCACGCCAGGCATTGATGGAGATGGAGCA 2374
Query 2099 GTCGGTCGAACTCAACGAGAACGCAAAGTTTCTCAAGGATCTAGAACTGCTCAAAACAGT 2158
|||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2375 GTCGGTTGAACTCAATGAGAACGCAAAGTTTCTCGAGGATCTAGAACTGCTGAAAACAGT 2434
Query 2159 CGAGACAGACCATTTGACAGATGCAATAGAGGAGGATGGGCCTGATGTGTCGCATGATGG 2218
||| ||||||||||||||| || ||||||||||||| || || | | | ||| |||
Sbjct 2435 CGACACAGACCATTTGACAAATACAATAGAGGAGGA-GGA--TGG-GCCT-G-ATGTTGG 2488
Query 2219 GTTACGTAGTTTCAGTTTTGGGGGTAGTAATCCTCTGGAGCAGCTTGGGCTATTTATGAA 2278
||| |||||||||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 2489 GTTGCGTAGTTTCAGTTTTGGGGGTAGTAATCCTCTTGAACAGCTTGGACTGTTTATGAA 2548
Query 2279 AGAGGATGAGGATGATGAGGAAGCTGATCCGCTCACTTCGCCAGCCCCTGGAATTGATAT 2338
| | ||||||||||| ||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct 2549 ACAAGATGAGGATGAGGAGGAAGCTGACCCGCTAACTTCGCCAGCCCCTGAAATAGATAT 2608
Query 2339 AGAAGAGGGAGAGATTGATTGAGCTTGTGTGCAGATCCACAAAGTCAAACAATAGA-ATT 2397
||||||||||||||||||||||| |||| ||| ||||| |||| ||||||||||| ||
Sbjct 2609 AGAAGAGGGAGAGATTGATTGAGGTTGTATGCTGATCCCCAAAACCAAACAATAGATAT- 2667
Query 2398 ATCTGAATTCTGAATCC 2414
|||||||||||||||||
Sbjct 2668 ATCTGAATTCTGAATCC 2684
> AT3G01770.1 | Symbols: ATBET10, BET10 | bromodomain and extraterminal
domain protein 10 | chr3:275411-278785 REVERSE LENGTH=2288
Length=2288
Score = 363 bits (196), Expect = 6e-99
Identities = 493/626 (79%), Gaps = 61/626 (10%)
Strand=Plus/Plus
Query 1692 GGTGGATTGGATCAGCTGGAAAG-TGCATCTCCG-GAGAAAATAAGTTC-TGTTGA---G 1745
||||||||| ||||| ||| ||| |||||| | | | ||| |||| || | |||| |
Sbjct 1476 GGTGGATTGAATCAGATGG-AAGATGCATC-CAGAGGGAAGCTAAG-TCTTATTGAGGGG 1532
Query 1746 GCGGATTGTCAGCAAGATGGAAATAGTGCT-CAGACTGAGAAGCAACTACCTCCTGAAAA 1804
|| ||| |||| |||||||||||||||||| || | |||||| |||||||||| |||||
Sbjct 1533 GCAGATGGTCATCAAGATGGAAATAGTGCTCCA-AAAGAGAAGGAACTACCTCCAGAAAA 1591
Query 1805 G-ATCTACAGGGCTGCTTTTTTGAAGAATCGATTTGCAGACATAATTTTGAAAGCCCGAG 1863
| | |||||||||||| | ||||| ||||||||||| || ||||| ||||| || | ||
Sbjct 1592 GCGT-TACAGGGCTGCTCTATTGAAAAATCGATTTGCGGATATAATCTTGAAGGCTCAAG 1650
Query 1864 AGA-AACCTCTTAACCAGAATGACCCGCGAGACCCAGAGA-AGCTCCAGCGTGAG-AGAG 1920
||| || ||||||| |||||||| ||||||||||||| | || || |||||| || |
Sbjct 1651 AGATAA-CTCTTAATCAGAATGAGAAACGAGACCCAGAGACA-CTGCAACGTGAGAAG-G 1707
Query 1921 AAGAACTCGAGCTT-CAAAAGAAGAAAGAGAAAGCGCGATTACAAGCAGAAGCCAAGGCA 1979
||||||| || || |||||||||||||| ||||| || ||||||||||||||||||| |
Sbjct 1708 AAGAACTGGA-ATTGCAAAAGAAGAAAGAAAAAGCACGGTTACAAGCAGAAGCCAAGGAA 1766
Query 1980 GCTGAAGAAGCTCGTAGAAAAGCTGAGGCACGAGCTGCAGCTGAAGCTGCGGCTGAGGCT 2039
||||||||||||||||||||||||||||||| | || | | || | ||
Sbjct 1767 GCTGAAGAAGCTCGTAGAAAAGCTGAGGCAC-A-----AG---A-G--GC---TAAG--- 1808
Query 2040 AAGAGAAAGCTGGAGCTTGAAAGAGAAGCAGCGCGCCAGGCATTGATGGAGATGGA-ACA 2098
| | |||| ||||| ||||||||||||||||| || ||||||||| | |||||||| | |
Sbjct 1809 A-G-GAAA-CTGGAACTTGAAAGAGAAGCAGCCCGGCAGGCATTGCTTGAGATGGAGA-A 1864
Query 2099 GTCGGTCGAACTCAACGAGAACGCAAAGTTTCTCAAGGATCTAGAACTGCTCAAAACAGT 2158
|||||| ||| | || |||||| ||| |||||||||||| ||||||||||||||||| ||
Sbjct 1865 GTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAACTGCTCAAAACGGT 1924
Query 2159 CGAGACAGACCATTTGAC-AGATGCAATAGAGGAGGATGGGC-CTGATGTGTCGCATGAT 2216
| || ||||| || || | || | | |||| | | ||| | |||| || | ||||
Sbjct 1925 TAACACGGACCAGTT-ACGAAAT-CTA-AGAG-ATGTTGG-CTCTGA-GT--C---TGAT 1973
Query 2217 GGGTTA-C-GTAGTTTCAGTTTTGGGGGTAGTAATCCTCTGGAGCAGCTTGGGCTATTTA 2274
||||| | ||| ||| |||| || || ||||||||||| |||||||| ||||||||||
Sbjct 1974 GGGTTGGCTGTA-TTTGGGTTT-GGAGGAAGTAATCCTCTAGAGCAGCTGGGGCTATTTA 2031
Query 2275 TGAAAGAGGATGAGGATGATGAGGAA 2300
||||| | || |||||||| || |||
Sbjct 2032 TGAAACATGAGGAGGATGAAGATGAA 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122658175635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5