BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488276

Length=598
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14360.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   966    0.0  


> AT5G14360.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:4630997-4631742 FORWARD LENGTH=634
Length=634

 Score =  966 bits (523),  Expect = 0.0
 Identities = 580/606 (96%), Gaps = 10/606 (2%)
 Strand=Plus/Plus

Query  1    AAAGTAGAAAGATATGATGAAGTTTAAGTCCAAGAGGTTTGGGATTAGATTTGGATTTGG  60
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  29   AAAGTAGAAAGAAATGATGAAGTTTAAGACCAAGAGGTTTGGGATTAGATTTGGATTTGG  88

Query  61   TAAAAGAATcaacaacaaaggcacacaacaagatcaacaacaaaagggagttagtaacaa  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  89   TAAAAGAATCAACAACAAAGGCACACAACAAGATCAACAACAAAAGGGAGTTGGTAACAA  148

Query  121  caacaa---TAGTAGCTCCAGCAACTATGAGATCAAATGGGAACTTAGGCCAGGAGGCAT  177
            ||||||   |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  149  CAACAACAATAGTAGCTGCAGCAACTGTGAGATCAAATGGGAACTTAGGCCAGGAGGCAT  208

Query  178  GCTTGTTCAAAAACGACAAGAGAGTATTGGTGAAGACTTGATCTCCATTAGAGTCTCTAC  237
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  209  GCTTGTTCAAAAAAGACAAGAGAGTATTGGTGAAGACTTGATCTCCATTAGAGTCTCTAC  268

Query  238  TTTTGCTCACTTTCATGATCTCTCCATTGAAGCCACCTCCACTTTTGGAGAACTTAAGAT  297
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  269  TTTTGCTCATTTTCATGATCTTTCCATTGAAGCCACCTCCACTTTTGGAGAACTTAAGAT  328

Query  298  GGTATTATCATTGCTTACCGGTTTAGAGCCAAAACAACAAAGGCTATTATTCAAAGGGAA  357
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  329  GGTATTATCATTGCTTACCGGTTTAGAGCCAAAACAACAAAGGCTAGTATTCAAAGGGAA  388

Query  358  AGAAAGAGAGGATCATGAATATCTACACATGGTTGGTGTTGGGGATAAAGACAAAGTATT  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  389  AGAAAGAGAGGATCATGAATATCTACACATGGTTGGTGTTGGGGATAAAGACAAAGTGTT  448

Query  418  GTTGTTAGAAGATCCTGCCTTCAAAGATAAAAAGCTTCTAGATCTTAACAACATTTCCAC  477
            ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct  449  GTTGTTAGAAGATCCTGGCTTCAAAGATAAAAAGCTTCTTGATCTTAACAGCATTTCCAC  508

Query  478  -ATCTTGTCC--C-ATAATCGTATAAACACAACTAAACAAATTTGTCAAATTAGTTGTTT  533
             | |||||||  | ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  509  TA-CTTGTCCGACTATAATCGTATAAACAAAACTAAACAAAATTGTCAAATTAGTTGTTT  567

Query  534  -GTCAATTTCTTTGTGAAATAATATCACATCAAGAAAATTAACTATAGCTATGATTGTCA  592
             ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct  568  TGTCAATTTCTTTGTGAAATAATATCAC-TCAAGAAAATTAACTATAGCTATGGTTGTCA  626

Query  593  TGAATT  598
            ||||||
Sbjct  627  TGAATT  632



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28784166231


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5