BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488277
Length=1298
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14370.1 | Symbols: | CCT motif family protein | chr5:46318... 1845 0.0
> AT5G14370.1 | Symbols: | CCT motif family protein | chr5:4631891-4633713
REVERSE LENGTH=1338
Length=1338
Score = 1845 bits (999), Expect = 0.0
Identities = 1225/1328 (92%), Gaps = 40/1328 (3%)
Strand=Plus/Plus
Query 1 ACAAAACTTAGAAAGCAGAGAAGAGTT-AAGTGTT--------AGAGAG--AGAGATCGG 49
||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1 ACAAAACTTAGAAAGCAGAGAAGAGTTAAAGTGTTAGAGAGAGAGAGAGACAGAGATCGG 60
Query 50 AGATGTGTAGCAACAAAACAAGTCCGGTCGTCGgagaagaaaaacagagtacgagaacat 109
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGATGTGTAGCAACAAAGCAAGTCCGGTCGTCGGAGAAGAAAAACAGAGTACGAGATCAT 120
Query 110 caaagaggatcaagaagagaaaaaacagagaagCTACCATCACCATGGAGGAAAAGTCTC 169
| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 121 CGAAGAGGATCAAGAAGAGAAAAAACAGAGAAGCTACCACCACCATGGAGGATAAGTCTT 180
Query 170 CTTCCAATCTTGACGCGTCTCGTAAGATCAGAACaaaaaccaaaaaaCCTAAATTTCTCA 229
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 181 CTTCCAATCTTGACGCGTCTCGTAAGATCAGAACAAAAACGAAAAAACCCAAATTTCTCA 240
Query 230 GTCTCAAGCTCGAACTCAACACTTCTCACGAGATCAACgagaattccag-agccaagaag 288
||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 241 GTCTCAAGCTCGAGCTCAACACTTCTCACGAGATCAACGAGAATCCCAGAAG-CAAGAAG 299
Query 289 agcaagaagaag---aagaataaaaaacagagcaagaagaaagaaCCTGATACGACGCCG 345
|||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 300 AGCAAGAAGAAGAACAACAACAAAAAACAGAGCAAGAAGAAAGAACCGGATACGACGCCG 359
Query 346 TTTAaagagaagaagagagcagagactact-ct---c--ggaggaggagagaaagaagaa 399
||||| |||||||||||||||||||||||| || | || ||||||||||||||||||
Sbjct 360 TTTAAGGAGAAGAAGAGAGCAGAGACTACTACTACACTGGGGGGAGGAGAGAAAGAAGAA 419
Query 400 gagCAATACGACACCGTCGCAGCTTACCTCTTCAATTCCGCCACCGACAGTACAATTTCT 459
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAGCAATACGACACCGTTGCAGCTTACCTCTTCAATTCCGCCACCGACAGTACAATTTCT 479
Query 460 TCGATCCACGATCTCCTCCCTTCCTCCGCCGCCACCGATGTAGATTGCGGCGGAGAAAGG 519
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 TCGATCCACGATCTCCTCCCTTCCTCCGCGGCCACCGATGTAGATTGCGGCGGAGAAAGG 539
Query 520 AATAATCTCTCTCCGTACGATCGTCGGGAGCATGGATCGTCGTCTTCTTCTCTTCTAAAG 579
|||||||| |||||||| ||||||| || || ||||||||||| ||||| ||||||| |
Sbjct 540 AATAATCTTTCTCCGTATGATCGTCAAGACCACGGATCGTCGTCGTCTTCCCTTCTAAGG 599
Query 580 ACAGCGATgaggaaaggagcgagcgaggaggaggagacgacggaggagCGGTGGGTGAGT 639
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACGGCGATGAGGAAAGGAGCGAGCGAGGAGGAGGAGACGACGGAGGAGCGGTGGGTGAGT 659
Query 640 TATTCAGAGGTTGTGGAAGAGGTGATGAGTCGGAGCGGAACTCCACGGTGTT---GCGGA 696
||||||||||||||||| || ||||||||||||||||| |||||||| |||| |||||
Sbjct 660 TATTCAGAGGTTGTGGAGGAAGTGATGAGTCGGAGCGGGACTCCACGTTGTTGCGGCGGA 719
Query 697 GGCGATGGAAACGATGGACGACCTTCGTTGGCTTTGAAGCTTGATTATGAGCAGATCATG 756
||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GGCGATGGAAACGATGGCCGGCCTTCGTTGGCTCTGAAGCTTGATTATGAGCAGATCATG 779
Query 757 GAGGCTTGGTCGGATAAAGGTACGCTTTATGTCGACGGAGAACCGCCGCAGACGGTGCCG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 GAGGCTTGGTCGGATAAAGGTACGCTTTATGTCGACGGAGAACCGCCGCAGACAGTGCCG 839
Query 817 GACTTGCATGCTTCCACTGATGGGTTTACTGACGGCGGAGAGGCCGGGAATTTATGGGCA 876
||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 840 GACTTGCATGCTTCCGCTGATGGGTTTAATGACGGCGGAGAGGCGGGGAATTTATGGGCA 899
Query 877 GTGCCGGAGATGGAAACGACGGAGAGGTTATGGAGAGGGCATAGAGAAGCCAGCTTGCTT 936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTGCCGGAGATGGAAACGACGGAGAGGTTATGGAGAGGGCATAGAGAAGCCAGCTTGCTC 959
Query 937 CGGTATAAAGAGAAACGACAAAACCGTCTTTTCTCTAAGCGGATTCGATATCAAGTTCGT 996
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGGTATAAAGAGAAACGGCAAAACCGTCTTTTCTCTAAGCGGATTCGATATCAAGTTCGT 1019
Query 997 AAACTCAACGCTGAGAAACGTCCTCGTGTTAAAGGCCGGTTTGTGAAGAGAGACGATTCG 1056
|||||||| || |||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1020 AAACTCAATGCCGAGAAACGTCCTCGTGTTAAAGGCCGGTTTGTAAAAAGAGAGGATTCA 1079
Query 1057 TAAACCACTAAAAAAGCTAAGTGACGGATGTTTGGTATAAT-ATGATATTGTTATTTGGT 1115
|||||||| ||||||||||||||||| |||| | ||||||||| ||||| ||
Sbjct 1080 TAAACCAC--------CTAAGTGACGGATGTTTAGTATT-TCATGATATTGCTATTTTGT 1130
Query 1116 AACTTTTTGAGAAGTTAGGGCTCAACCGGAGCATACCGAGATTTGAAGATGATATTGGTC 1175
|||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1131 GACTTGTTGAGAAGTTAAGGCTCAACCGGAGTATACCGAGAACTGAAGATGATATTGGTC 1190
Query 1176 TGTATAGGGGTCTTGACCAGCTTGGTTATGCAAAAATTTCGGTTTTGTTTGGCTGC--A- 1232
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |
Sbjct 1191 TGTATAGGGGTCTTGACCAGCTCGGTTATGCAAAAGTTTCGGTTTTGTTTGGCCGCCTAG 1250
Query 1233 -TTAG-TTCTCTTATTAGAAAAGTTAACTAATTTGCACCAAATCATCTGGACAATAATGA 1290
|| | |||||||||||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 1251 CTTTGGTTCTCTTATTAGAAAAGTCAACTAATTTGTACCAAATCATCTGAACAATAATGA 1310
Query 1291 TAATAAAA 1298
||||||||
Sbjct 1311 TAATAAAA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63855093240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5