BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488278
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14380.1 | Symbols: AGP6 | arabinogalactan protein 6 | chr5:... 1085 0.0
> AT5G14380.1 | Symbols: AGP6 | arabinogalactan protein 6 | chr5:4635797-4636676
REVERSE LENGTH=880
Length=880
Score = 1085 bits (587), Expect = 0.0
Identities = 786/876 (90%), Gaps = 38/876 (4%)
Strand=Plus/Plus
Query 1 ATCCTAAAGCTTTTGCAGTATTTCTCTATAGAATAAGaaaaataaaac-aaaa-aaataa 58
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |
Sbjct 1 ATCCTAAAGCTTTTGCAGTATTTCTCCATAGAATAAGAAAAATAAAACAAAAATAAAT-A 59
Query 59 aattaaaaaaTACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTC---------A-- 107
|| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 AA-TAAAAAATACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTCAATAAAAAAACT 118
Query 108 A-T-----a-aaaaaaaaaTGGCACGCCAATTTGTCGTTTTGGCCCTATTGGCTTTAACC 160
| | | |||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 119 ATTAAAACAGAAAAAAAAATGGCACGTCAATTTGTCGTTTTGGTTCTATTGACTTTAACT 178
Query 161 ATCGCCAGCGTTTTCGCCGCTGACGCTCCATCAGCTTCCCCCAAAAAATCTCCATCACCC 220
||||||| || ||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 179 ATCGCCACCGCTTTCGCCGCCGACGCTCCCTCAGCTTCTCCCAAAAAATCTCCATCACCC 238
Query 221 ACCGCCACACCAACCAAGGCTCCTG-CAGCCCCAACCAAGGCTCCGGCAGCTCCAACCAA 279
|| ||| |||||||||||||||| | | ||| ||||||||||||| |||||||||||||
Sbjct 239 ACTGCCGCACCAACCAAGGCTCC-GACTGCCACAACCAAGGCTCCTTCAGCTCCAACCAA 297
Query 280 GGCTCCGGCTGCCGCACCTAAATCATCCTCGGCCTCTTCTCCCAAAGCATCTTCCCCTGC 339
|||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 298 GGCTCCAGCCGCCGCACCTAAATCATCTTCGGCCTCTTCTCCAAAAGCATCTTCTCCGGC 357
Query 340 TGCTGAAGGACCAGTCCCCGATGATGACTACTCTGCCTCCAGTCCTAGTGACTCCGCCGA 399
||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct 358 TGCCGAAGGACCCGTCCCCGAGGATGACTACTCTGCCTCTAGTCCTAGCGACTCTGCTGA 417
Query 400 GGCACCTACTGTCTCCTCCCCACCGGCTCCCACCCCTGACAGCACCTCCGCTGCTGATGG 459
||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 418 GGCACCTACCGTCTCCTCCCCACCGGCTCCCACCCCCGACAGCACTTCCGCCGCTGATGG 477
Query 460 ACCAAGCGATGGACCCACTGCGGAGTCACCCAAGAGTGGTGCCGTGACAACCGCTAAGTT 519
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 478 ACCAAGCGATGGACCCACTGCAGAGTCACCCAAGAGTGGTGCCGTGACAACTGCTAAGTT 537
Query 520 CTGTGTTGTCGGCACAATCGCCGCCGTCGGATTCTTCTTCTTTTCTTTCTAAGTTAAATT 579
|| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 538 CTCTGTTGTCGGCACAGTCGCCACCGTCGGCTTCTTCTTCTTTTCTTTCTAAGTTAAGTC 597
Query 580 GTCCACGTTTTGCTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCAGTAAA 639
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 GTCCACGTTTTGGTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCCGTAAA 657
Query 640 TTTATTTTATATATACGTTTATAAATCGAGATTAACTGGAGTAAATATAAACCTAAATGT 699
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 TTTATTTTATATATACGTTTATAAATCGAGATTAATTGGAGTAAATATAAACCTAAATGT 717
Query 700 CGTTATGAAATTTTGTTAGAACAAATGTTTCATATTTTGTTTAATAAAAATTATTTTTT- 758
| || |||||||| |||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 718 CATTTTGAAATTTGGTTAGAACAAAT-TTTCATATTTTGTTTAATAAAC-TTATTTTTTT 775
Query 759 -GGAAATGCATATGATTCT-TGTGGTCTAATG-TCTTTTAGTTCCTATTGTCATATGTTG 815
|||||||| ||||||| | |||||||||||| ||||||||||||||||||||| |||||
Sbjct 776 TGGAAATGCTTATGATT-TGTGTGGTCTAATGGTCTTTTAGTTCCTATTGTCATGTGTTG 834
Query 816 TGAATGAATGTGTAGATATCATAAATGATATAAATG 851
||||| | ||||||||| |||||||||||||
Sbjct 835 TGAAT---T----AGATATCATGAATGATATAAATG 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41493405422
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5