BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488278 Length=851 Score E Sequences producing significant alignments: (Bits) Value AT5G14380.1 | Symbols: AGP6 | arabinogalactan protein 6 | chr5:... 1085 0.0 > AT5G14380.1 | Symbols: AGP6 | arabinogalactan protein 6 | chr5:4635797-4636676 REVERSE LENGTH=880 Length=880 Score = 1085 bits (587), Expect = 0.0 Identities = 786/876 (90%), Gaps = 38/876 (4%) Strand=Plus/Plus Query 1 ATCCTAAAGCTTTTGCAGTATTTCTCTATAGAATAAGaaaaataaaac-aaaa-aaataa 58 |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| | Sbjct 1 ATCCTAAAGCTTTTGCAGTATTTCTCCATAGAATAAGAAAAATAAAACAAAAATAAAT-A 59 Query 59 aattaaaaaaTACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTC---------A-- 107 || ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 60 AA-TAAAAAATACTGCTTTAGCTTTTGGAGTATCCTCCTTTTAATCTCAATAAAAAAACT 118 Query 108 A-T-----a-aaaaaaaaaTGGCACGCCAATTTGTCGTTTTGGCCCTATTGGCTTTAACC 160 | | | |||||||||||||||| |||||||||||||||| |||||| ||||||| Sbjct 119 ATTAAAACAGAAAAAAAAATGGCACGTCAATTTGTCGTTTTGGTTCTATTGACTTTAACT 178 Query 161 ATCGCCAGCGTTTTCGCCGCTGACGCTCCATCAGCTTCCCCCAAAAAATCTCCATCACCC 220 ||||||| || ||||||||| |||||||| |||||||| ||||||||||||||||||||| Sbjct 179 ATCGCCACCGCTTTCGCCGCCGACGCTCCCTCAGCTTCTCCCAAAAAATCTCCATCACCC 238 Query 221 ACCGCCACACCAACCAAGGCTCCTG-CAGCCCCAACCAAGGCTCCGGCAGCTCCAACCAA 279 || ||| |||||||||||||||| | | ||| ||||||||||||| ||||||||||||| Sbjct 239 ACTGCCGCACCAACCAAGGCTCC-GACTGCCACAACCAAGGCTCCTTCAGCTCCAACCAA 297 Query 280 GGCTCCGGCTGCCGCACCTAAATCATCCTCGGCCTCTTCTCCCAAAGCATCTTCCCCTGC 339 |||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || || Sbjct 298 GGCTCCAGCCGCCGCACCTAAATCATCTTCGGCCTCTTCTCCAAAAGCATCTTCTCCGGC 357 Query 340 TGCTGAAGGACCAGTCCCCGATGATGACTACTCTGCCTCCAGTCCTAGTGACTCCGCCGA 399 ||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||| || || Sbjct 358 TGCCGAAGGACCCGTCCCCGAGGATGACTACTCTGCCTCTAGTCCTAGCGACTCTGCTGA 417 Query 400 GGCACCTACTGTCTCCTCCCCACCGGCTCCCACCCCTGACAGCACCTCCGCTGCTGATGG 459 ||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct 418 GGCACCTACCGTCTCCTCCCCACCGGCTCCCACCCCCGACAGCACTTCCGCCGCTGATGG 477 Query 460 ACCAAGCGATGGACCCACTGCGGAGTCACCCAAGAGTGGTGCCGTGACAACCGCTAAGTT 519 ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 478 ACCAAGCGATGGACCCACTGCAGAGTCACCCAAGAGTGGTGCCGTGACAACTGCTAAGTT 537 Query 520 CTGTGTTGTCGGCACAATCGCCGCCGTCGGATTCTTCTTCTTTTCTTTCTAAGTTAAATT 579 || ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| | Sbjct 538 CTCTGTTGTCGGCACAGTCGCCACCGTCGGCTTCTTCTTCTTTTCTTTCTAAGTTAAGTC 597 Query 580 GTCCACGTTTTGCTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCAGTAAA 639 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 598 GTCCACGTTTTGGTTGGATGGATCAGAGATTTGTATAATCTTTTGAGTTGAGGCCGTAAA 657 Query 640 TTTATTTTATATATACGTTTATAAATCGAGATTAACTGGAGTAAATATAAACCTAAATGT 699 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 658 TTTATTTTATATATACGTTTATAAATCGAGATTAATTGGAGTAAATATAAACCTAAATGT 717 Query 700 CGTTATGAAATTTTGTTAGAACAAATGTTTCATATTTTGTTTAATAAAAATTATTTTTT- 758 | || |||||||| |||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 718 CATTTTGAAATTTGGTTAGAACAAAT-TTTCATATTTTGTTTAATAAAC-TTATTTTTTT 775 Query 759 -GGAAATGCATATGATTCT-TGTGGTCTAATG-TCTTTTAGTTCCTATTGTCATATGTTG 815 |||||||| ||||||| | |||||||||||| ||||||||||||||||||||| ||||| Sbjct 776 TGGAAATGCTTATGATT-TGTGTGGTCTAATGGTCTTTTAGTTCCTATTGTCATGTGTTG 834 Query 816 TGAATGAATGTGTAGATATCATAAATGATATAAATG 851 ||||| | ||||||||| ||||||||||||| Sbjct 835 TGAAT---T----AGATATCATGAATGATATAAATG 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41493405422 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5