BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488279
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14390.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2326 0.0
> AT5G14390.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:4637312-4639756 REVERSE LENGTH=1530
Length=1530
Score = 2326 bits (1259), Expect = 0.0
Identities = 1426/1504 (95%), Gaps = 22/1504 (1%)
Strand=Plus/Plus
Query 1 GTTCATTCTCTTCCTTTACCATTTC-AAGTGCCACTTTTTCTTCCTAAATCCTCTCTCTC 59
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 GTTCATTCTCTTGCTTTACCATTTCAAAGTGCCACTTTTTCTTCCTAAATCCTCTCTCTC 60
Query 60 TATCTCGCGCTCCGTTCCCGAGAAAAAGAAAAAGCTTCAATCTCAAATCTTTCAGCAGCT 119
||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 61 --TCT----CTCCGTTCCCGAG-ACAAGCAAAAGCTTCAATCTCAAATCTTTCAGCAGCT 113
Query 120 ACAAAAATGTTCTTCATCTGAAGAGAGACTGTGAAGCagagagagagagagagagagaga 179
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 114 ACAAAAATGTTCTTCATCT-AAAAGAGACTGTGAAGCAGAGAGAGAGAGAGAGAGAGAGA 172
Query 180 gagagagagaTGGGAGGTGTGACGTCATCAGTGGCGGCGAAGTTTGCTTTCTTCCCGCCG 239
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 173 GAGAGAGAGATGGGAGGTGTGACGTCATCAGTTGCGGCGAAGTTCGCTTTCTTCCCGCCG 232
Query 240 AGTCCGTCGTCTTACAAGCTGGTCTACGACGAACTGACCGGACTTCTTCTGATGAACCCA 299
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 233 AGTCCGTCGTCTTACAAGCTGGTTTACGATGAACTGACCGGACTTCTTCTGATGAACCCA 292
Query 300 TTTCCTCACCGTGAAAACGTCGAGATCCTTAAGCTTCGGACACGTAGAGGAACAGAGATC 359
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 293 TTTCCTCACCGTGAAAACGTTGAAATCCTTAAGCTTCCGACACGTAGAGGAACAGAGATC 352
Query 360 GTGACTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCCCATGGAAAC 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 GTGGCTATGTACGTCAGACATCCGATGGCTACCTCTACTCTGCTTTATTCCCATGGAAAC 412
Query 420 GCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAATTGAGCATCCATCTTAAGGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCCGCCGATCTGGGCCAGATGTATGAGCTCTTCATCGAATTGAGCATCCATCTTAAGGTT 472
Query 480 AATCTCATGGGGTATGATTACTCAGGGTATGGACAATCAACTGGAAAGCCAAGTGAGCAC 539
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 473 AATCTCATGGGGTACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCAAGTGAGCAC 532
Query 540 CATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTACGGAGCAAAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 533 CATACATATGCTGATATCGAAGCTGCTTATAAATGTCTTGAGGAAACCTATGGAGCAAAA 592
Query 600 CAGGAAGACGTAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATTAGATCTTGCT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAGGAAGACATAATCCTTTATGGCCAATCCGTTGGAAGTGGACCTACATTAGATCTTGCT 652
Query 660 GCTCGATTGCCTCATTTAAGAGCTGTTGTTCTCCATAGCCCGATTCTTTCGGGTTTAAGG 719
||||| |||||||| |||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 653 GCTCGGTTGCCTCAATTAAGAGCTGCTGTTCTCCATAGCCCGATTCTTTCTGGTCTAAGA 712
Query 720 GTAATGTATCCAGTGAAAAAGACATACTGGTTCGACATCTTCAAGAATATCGACAAAATC 779
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GTAATGTATCCAGTGAAGAAGACATACTGGTTCGACATCTTCAAGAATATCGACAAAATA 772
Query 780 CCACTAGTTAATTGCCCGGTTCTCGTCATTCACGGAACTTGTGATGAAGTAGTTGACTGC 839
|| || || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 773 CCTCTTGTGAATTGCCCGGTTCTCGTCATTCACGGAACTTGTGATGAAGTTGTTGACTGT 832
Query 840 TCCCATGGAAAACAACTGTGGGAACTCTCTAAAGAGAAATATGAACCGCTTTGGCTCGAA 899
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCTCATGGAAAACAACTATGGGAACTCTCTAAAGAGAAATATGAACCGCTTTGGCTCGAA 892
Query 900 GGTGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTAAACACCTTAAGAAGTTC 959
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GGCGGTAACCACTGTGATCTAGAACACTATCCTGAATACATTAAACACCTTAAGAAGTTC 952
Query 960 ATCACAACCGTAGAGAGATCTCTCTCCTCAAGGGCGAGCACGGCCCAATCAGAAAAACAG 1019
|||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||
Sbjct 953 ATCACAACCGTAGAGAGAGATCTCTCCTCGAGGGCGAGCACGGCCCAATTAGAGAAACAG 1012
Query 1020 AGCAGTGATTTGGAAATGCCGAGGCAGAGCGTAGATAGAAGAGAGAAGCCGAGGCAAAGC 1079
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGCAGCGATTTGGAAATGCCGAGGCAGAGCGTAGATAGAAGAGAGAAGCCGAGGCAAAGC 1072
Query 1080 GTTGATAGAAGGGAGAAAGAGAAACCTCCAAAGGGTCCGTCGAAGAAGAGTAAGCTGAGA 1139
||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1073 GTTGATAAAAGGGAGAAAGAGAAACCTCCAAAGGGTCCTTCAAAGAAGAGTAAGCTGAGA 1132
Query 1140 ATCACATTCGAGCAGCACTTAGATCGGACTAGGAGGAGCGTTGACTTCCACGAAAAGGCA 1199
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1133 ATCACGTTCGAGCAGCACTTAGATCGGACTAGGAGAAGCGTTGACTTCCACGAAAAGGCA 1192
Query 1200 AGGAAGAGCGTTGACCACCATCAACATCATCAGAATCATCATCAGATTGAGAGAGGAAGG 1259
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGGAAGAGCGTTGACCATCATCAGCATCATCAGAATCATCATCAGATTGAGAGAGGAAGG 1252
Query 1260 AAGAGTGTTGATAGATTGGATAGAGTACGGTCTGAGTAAAACCGGAGAAAC-CTACCACA 1318
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1253 AAGAGTGTTGATAGATTGGATAGAGTACGGTCTGAGTAAA-CCGGAGAAAATCTACCACA 1311
Query 1319 CGTACATAAGTTGTTACAGAACAAGAACATTTGATCTTGATCTTGATTGGCGATTCTAAt 1378
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1312 CGTACATAAGTTGTTACAGAACAAGAACATTTGATCTTGATCTTGATTGGCCATTCTAAT 1371
Query 1379 gtttatg-tgttttgtttttgatt-gtgagttattctgtagttt-atttgggtgtg--at 1433
||||||| | ||||||||| |||| |||||||||||| |||||| ||||||||||| ||
Sbjct 1372 GTTTATGGTTTTTTGTTTT-GATTTGTGAGTTATTCTCTAGTTTTATTTGGGTGTGTCAT 1430
Query 1434 tt-ttC--T--TGAAGCTTCAATCTTAAGCAGACAATTGAGAGAATTTAGGTCTTTACAA 1488
|| || | |||||||| ||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1431 TTCTTGAATGGTGAAGCTTAAATCTTAAGCAAACAAATGAGAGAAATTAGGTCTTTACAA 1490
Query 1489 TAAC 1492
||||
Sbjct 1491 TAAC 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5