BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488286
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14440.1 | Symbols: | Surfeit locus protein 2 (SURF2) | chr... 1480 0.0
> AT5G14440.1 | Symbols: | Surfeit locus protein 2 (SURF2) | chr5:4655903-4657907
REVERSE LENGTH=1141
Length=1141
Score = 1480 bits (801), Expect = 0.0
Identities = 954/1025 (93%), Gaps = 22/1025 (2%)
Strand=Plus/Plus
Query 1 TTGATCTCAATTACACTAAAACGGCAAGTCGCAGTCGTGTAAACTACTTGCAGTCCTCTC 60
|||||||||||||||||||||||||||||| || |||||| |||||||||||| | |||
Sbjct 3 TTGATCTCAATTACACTAAAACGGCAAGTCACAATCGTGT-AACTACTTGCAG-AC-CTC 59
Query 61 CTTACAGTGAAAC-ACACAAATCGCTAAGAAATAGTACATCAATGGCGGCGACAGAGGAA 119
||| ||||||||| || ||||| |||||||||||| || |||||||||||||||||||||
Sbjct 60 CTT-CAGTGAAACAACCCAAATTGCTAAGAAATAGAACCTCAATGGCGGCGACAGAGGAA 118
Query 120 GAGATGACAACGACGACGAAGGAAGGCGCTGACCTATTGGGGAAGCCAAAGTATAAGAAA 179
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 GAGGTG---ACGACGACGAAGGAAGGCGCCGACCTATTGGGGAAGCCAAAGTATAAGAAA 175
Query 180 CTCGACAACGGGAGATTTAAATGTGTGCAGACGGGTCACGAGCTACTCGAGAAAGACAAG 239
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 176 CTCGAGAACGGGAGATTTAAATGCGTGCAGACGGGTCACGAGCTACTCGAGAAAGACAAG 235
Query 240 AAGGTCTATTCACAGAGTAAACGTTGTCGTTTAGGGCTTATTGATTATGCGTTATCTCAC 299
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 236 AAGGTCTATTCACAGAGTAAACGATGCCGTTTAGGGCTTATTGATTATGCCTTATCTCAT 295
Query 300 AGCAAGCCTCCTCTTAACTTGTTCGAGCAAGATCCTAACGCTCGCTCAAAACTGAAATGT 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 296 AGCAAGCCTCCTCTTAACTTGTTCGAACAAGATCCTAACGCTCGCTCAAAACTGAAATGT 355
Query 360 AAGCTAACGGGTGATACGGTAAACAAGACTGAGGAACATATTTGGAAGCATATCAATGGA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 AAGCTAACGGGCGATACGGTAAACAAGACTGAGGAACATATTTGGAAGCATATCACTGGA 415
Query 420 CGGCGCTTTCTCAACAGATTAGAGGAGAAGGAACGAGAGAAAGAGTCTGGTTCTATTCCA 479
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 416 CGGCGCTTCCTCAACAGATTAGAGGAGAAGGAACGAGAGAAAGAGTCTGGATCTATTCCA 475
Query 480 GAGGTAGGTGGAGAAACACTGGCGGAGGAAAATGGTGTAAAGgaagaagaaaagaagaag 539
| || |||||||||||||| |||| |||||||||| ||| |||| ||||| ||||| ||
Sbjct 476 GCGGAAGGTGGAGAAACACCGGCGAAGGAAAATGGCGTAGAGGATGAAGATAAGAA-AA- 533
Query 540 aagaagaagaagaagaataagaagaaggagaagaagaaaaacaagaagtcagttgaaaag 599
| |||||||||||||||||| |||||| | | ||| ||| |||||||||||||||||||
Sbjct 534 A-GAAGAAGAAGAAGAATAATAAGAAG-A-A-GAA-AAA--CAAGAAGTCAGTTGAAAAG 586
Query 600 gaaaagaaTGGCGAGGACGTTGCTGATGAAGTCGAACATGAAAATGATGAAGCTGTTGAG 659
|||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 AAAAAGAATGGAGAGGATGTTGCTGATGAAATCGAACATGAAAATGATGAAGCTGTTGAG 646
Query 660 GAGGAGCTTGAGTTTTGGATGCCTCCAGATGGAGAGAGGTGGGACTTTGATGATGGAGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 647 GAGGAGCTTGAGTTTTGGATGCCTCCAGATGGAGAGAGGTGGGACTTTGATGATGGAAGA 706
Query 720 GACCGGTGGGGCTCAGATTCAGACTCAGAAGAGGAAATGAATGAGGAAGA-AGATCCAAT 778
||||||||||||||||||||||||||||| | |||||||||||||||| | |||||| ||
Sbjct 707 GACCGGTGGGGCTCAGATTCAGACTCAGATGTGGAAATGAATGAGGAA-ACAGATCCCAT 765
Query 779 AGGTGAATTTGATGAAGATGGAGAGATTAGTATGGAAGAGTCCATACTAATAGGTGAAGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AGGTGAATTTGATGAAGATGGAGAGATTAGTATGGAAGAGTCCATACTAATAGGTGAAGT 825
Query 839 TGATGAAGATGGCAAGATTGTGTTGGATGAGACTCATGCCAGCAGCAACAAGAGGAAACC 898
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 826 TGATGAAGATGGCAAGATTGTTTTGGATGACACTCATGCCAGCAGCAACAAGAGGAAACA 885
Query 899 TGAAGAATTCAGTTCCAATGACCTTCCTTCgaagaagaagaccaagaagaagaaaaagaa 958
||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 886 TGAAGAACTCGGTTCCAGTGACCTTCCTTCGAAGAAGAAGAATAAGAAGAAGAAAAAGAA 945
Query 959 gaagaaTGTCGAAACAACATCGTCAT-A-AT-AAGTCTGATCTGTTTTGTATTTCACTAT 1015
||||||||||||| |||||||||| | | || ||||||||| |||||||||||||||| |
Sbjct 946 GAAGAATGTCGAAGCAACATCGTCGTCATATTAAGTCTGATATGTTTTGTATTTCACTTT 1005
Query 1016 GTACT 1020
|||||
Sbjct 1006 GTACT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5