BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488288
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14460.1 | Symbols: | Pseudouridine synthase family protein... 2778 0.0
> AT5G14460.1 | Symbols: | Pseudouridine synthase family protein
| chr5:4660059-4662668 REVERSE LENGTH=1928
Length=1928
Score = 2778 bits (1504), Expect = 0.0
Identities = 1685/1768 (95%), Gaps = 29/1768 (2%)
Strand=Plus/Plus
Query 1 GAGAAAACATCGTGTCGTTTTAATATATCGTTTAACA--A-CACAATCTCTTCTCCGTTG 57
|||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||
Sbjct 1 GAGAAAACATCGTGTCGTTTTAATTTATCGTTTAACATCATCACCTTCTCTTCTCCGTTG 60
Query 58 GAGAACCACTGCAATAATCGCCGGAGGTGGATTTCATCTTTCCCCCGCCTCCAGTGTTCT 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAACCACTGCAATAATCACCGGAGGTGGATTTCATCTTTCCCCCGCCTCCAGTGTTCT 120
Query 118 C-ATAAATGGCGAAGGCTCTACACTTCACAAGACTAATAATGTCTTCTTCTTCAGCAAGA 176
| || ||||||||| |||||||||||||||||| ||||| |||||||||||||||
Sbjct 121 CAAT-AATGGCGAAATCTCTACACTTCACAAGAC---TAATG---TCTTCTTCAGCAAGA 173
Query 177 ATGTGTATGACTTCTTCTCTCTTCTTTTCCTCAGTCAAACCAAGGAGAAACATCCATAAA 236
|||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 174 ATGTCAATGACTTCTCCTCTCTTCTTCTCCTCAGTCAAACCATGGAGAAACATCCATAAA 233
Query 237 CCCTACTTGGCTTCTCTCTTCCTTTCCACAACATCTACTCGATACCCTCTTCAATACGAC 296
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 234 CCCTACTTGGCTTCTCTCTTCCTCTCCACAACATCTACTCGATACCCACTTCAATACGAC 293
Query 297 ATGATCATCAATCGTCCCACACAATCTTCTCTCTCTCAAACCCGTCGTCGACCCCCTAAA 356
|||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||
Sbjct 294 ATGATCATCAATCGTCCCACACAATCATCTCTCTCTCAAAACCGTCGTCGTCCCCCTAAA 353
Query 357 GCAATCGAATCCGGTGCGCCTGACTCAGCAGAGCCAGAATTCGATTCATGGGTCGACAAT 416
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 GCCATCGAATCCGGTGCACCTGACTCAGCAGAGCCGGAATTCGATTCATGGGTCGACAAT 413
Query 417 AAACTAGCTTTAGAGCGTGAACAGGGTCGACCCGGTTCAGGAGATCCGGAAATGGATAAA 476
||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 414 AAACTGGCTATGGAGCGTGAACAGGGTCGACCCGGTTCTGGAGATCCGGAAATGGATAAA 473
Query 477 GCCAAGAGGAAATACTACAGTAAGAGAAGGAAGAGACTATACGGGTCTGATTCTGAAGAC 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCCAAGAGGAAATACTACAGTAAGAGAAGGAAGAGACTATACGGGTCTGATTCTGAAGAT 533
Query 537 GAG---AGCAGCAGAAAATCAGATGAAGGATTCGTTGAATTGAAACCTCAAGTTGTGGAA 593
||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 534 GAGAACAGTAGCAGAAAATCAGATGAAGGATTCGTTGAATTGAAACCTGAAGTTGTTGAA 593
Query 594 TTTGATAGGTTACATCAGAGAGAAGAGGAATTGTATTTCTATGATACTTTTGCTTATCCA 653
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 594 TTTGATAGGTTACATCAGAGAGAAGAGGAATTGTATTTTTATGATACTTTTGCTTATCCA 653
Query 654 TGGGAGAAAGATAAGCATTATAAGATGGTGTATCAGTTAGAGAAGAAGTATTATCCTGAT 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGGAGAAAGATAAGCATTATAAGATGGTGTATCAGTTAGAGAAGAAGTATTATCCTGAC 713
Query 714 CAGTGTTTAGATAAGGCGTTTCTGCAACCTGGAGAAGTTTCCAAGAAGGGTGATGATGAT 773
|||||||||||||||||||||||||||||||||||||||| ||||| | | |||||||
Sbjct 714 CAGTGTTTAGATAAGGCGTTTCTGCAACCTGGAGAAGTTTTGAAGAA--GAG-TGATGAT 770
Query 774 TCTGGGAAAGTTAGAGGGAAGAAGAAAGTAGTAGCAGCACTTGGTGGGAAGAGAAATGAG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 TCTGGGAAAGTTAGAGGGAAGAAGAAAGTAGTAGCAGCACTTGGTGGGAAGAGAAGTGAG 830
Query 834 GTTAAACGAATTGGTATGGAGAATTGTGTTGAGGATGATGACAAGTTGGTGTTTTTCGAT 893
|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 831 GTTAAACGAATTGGTATGGAGAATTGTGATGAGGATGATGATAAGTTGGTGTTTTTTGAT 890
Query 894 GAAGT------G-A--AGGAGAAGAAGAAGCCGGAGGATGA---TGTTGTTGTTACTGAG 941
||||| | | |||||||||||||| | |||||||| ||||||||||||||||
Sbjct 891 GAAGTGAAGGAGAAGGAGGAGAAGAAGAAGTCAGAGGATGATGTTGTTGTTGTTACTGAG 950
Query 942 AAGAAAGTGGAACAGTTCTTTAAGGGTTTAACGAAATCTCCCAATGAGAAAGGTGTGGCT 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 AAGAAAGTGGAACAGTTCTTTAAGGGTTTAACGAAATCTCCCAATGAGAAAGGTATGGCT 1010
Query 1002 AGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGTGAACTTCCTCCTAGA 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 AGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGTGAACTTCCTCCTAGA 1070
Query 1062 TGGGATGGTCCTAACGGTACAGTGCTTTTGGTGAACAAACCTAAAGGATGGACTTCCTTC 1121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1071 TGGGATGGTCCTAACGGTACAGTGCTTTTGGTGAACAAACCTAAAGGATGGACTTCTTTC 1130
Query 1122 ACTGTCTGTGGTAAGCTACGACGATTAGTCAAAGTGAAAAAGGTGGGACATGCTGGAACA 1181
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1131 ACTGTCTGTGGTAAGCTACGACGATTAGTCAAAGTGAAAAAGGTGGGTCATGCTGGAACA 1190
Query 1182 CTTGATCCCATGGCTACAGGTCTGTTAATCGTCTGCATCGGTAAAGCCACTAAGGTTGTT 1241
||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1191 CTTGATCCCATGGCTACTGGTCTATTAATCGTCTGCGTCGGTAAAGCCACTAAGGTTGTT 1250
Query 1242 GACAGATACCAAGGTATGATCAAAGGTTACAGCGGAGTTTTTCGTCTTGGTGAAGCCACT 1301
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1251 GACAGATACCAAGGTATGATCAAAGGTTATAGCGGAGTTTTTCGTCTTGGTGAAGCCACT 1310
Query 1302 TCAACTTTAGACGCTGACTCTCCTGTGATTCAGCGAGAGCCTTGGGAGCATATAAAAGAT 1361
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1311 TCAACTCTAGACGCTGACTCTCCTGTGATTCAGCGAGAGTCTTGGGAGCATATAAAAGAT 1370
Query 1362 GATGACATTAAGAAAGCTTTGACATCATTTCTTGGAGAAATATGGCAAGTTCCACCAATG 1421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1371 GATGACATTAAGAAAGCTTTGACATCATTTCTTGGAGAAATATGGCAAGTTCCACCGATG 1430
Query 1422 TTCTCTGCGATAAAAGTTGGAGGCGAGAAGATGTACGAGAAGGCAAGAAGAGGAGAAACC 1481
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1431 TTCTCTGCGATAAAAGTTGGAGGTGAGAAGATGTACGAGAAGGCAAGAAGAGGAGAAACC 1490
Query 1482 GTAGAGCTTTCTCCAAGAAGAATTTCGATTTTCCAGTTTGACATTGAACGCAGTTTAGAT 1541
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1491 GTAGAGCTTTCTCCAAGAAGAATTTCAATTTTCCAGTTTGACATTGAACGCAGTTTAGAT 1550
Query 1542 GACAGACAAAATCTGATATTTCGGGTTATATGCTCTAAGGGTACATACATAAGATCTCTC 1601
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1551 GACAGACAAAATCTGATATTCCGGGTTATATGCTCTAAGGGTACATACATAAGATCTCTC 1610
Query 1602 TGTGCAGATCTTGCGAAAGCTCTTGGAAGTTGTGCTCACCTCACTGCTCTCCGGCGAGAT 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TGTGCAGATCTTGCGAAAGCTCTTGGAAGTTGTGCTCACCTCACTGCTCTCCGGCGAGAT 1670
Query 1662 TCAATCGGTGAATATTCTGCTAACGATGCTTGGGAATTCAATGAGTTAGAAGCAGCAATC 1721
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1671 TCAATTGGTGAATATTCTGCTAATGATGCTTGGGAATTCAATGAGTTAGAAGCAGCAATC 1730
Query 1722 ACTAAAAACTACTTCTAGAAGAAAACAA 1749
||||||||||||||||||||| ||||||
Sbjct 1731 ACTAAAAACTACTTCTAGAAGGAAACAA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5