BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488289 Length=1740 Score E Sequences producing significant alignments: (Bits) Value AT5G14480.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 2495 0.0 AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 610 1e-173 AT3G26445.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 67.6 4e-10 > AT5G14480.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr5:4667774-4670106 FORWARD LENGTH=1787 Length=1787 Score = 2495 bits (1351), Expect = 0.0 Identities = 1585/1690 (94%), Gaps = 47/1690 (3%) Strand=Plus/Plus Query 1 GTTTTCTTAAGAGGAGAAGGATTAGA-TTAAACAGAGATTTTTTCGGATATTTATTCTCT 59 |||||||||||||||||||||||||| |||| | |||||||||||||||| || | Sbjct 1 GTTTTCTTAAGAGGAGAAGGATTAGATTTAAGC-GAGATTTTTTCGGATA--TA-----T 52 Query 60 CAGACTTCTCTGttttttttttcttctttaattaaattgtttcgtgttttttgtttcgag 119 | | ||||||| ||| ||||||||||||||||||||||| ||||||||||||| Sbjct 53 -ATA-TTCTCTG-------TTT-TTCTTTAATTAAATTGTTTCGTG-TTTTTGTTTCGAG 101 Query 120 -tttcttcataaagttttgatttttgtcgggcttcgattttcgGGGTCCGAGAGATTCTT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 102 TTTTCTTCATAAAGTTTTGATTTTTGTCGGGCTTCGATTTTCGGGGTCCGAGATATTCTT 161 Query 179 CTTCTTATTCGCGAAAATTTCCCCCGAGAAAACTCTTCTGGGTATAACCATGTCCGATGG 238 |||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||| Sbjct 162 CTTCTTCTTCGCGATAATTTCCCCCGAGAAAACTCTTCTGGGTAAAATCATGTCCGATGG 221 Query 239 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 281 Query 299 TCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGCTACGAGGACTTGATTTCAAGAC 358 ||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||||| Sbjct 282 TCGAGCAGCCAAGGCCTTCTCTAGGGTTAGATGTGTACTACGAGGATTTGATTTCAAGAC 341 Query 359 GTATATCTTCCTCTTCACCATTGTGCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 418 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 342 ATATATCTTCTTCTTCACCATTGTCCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 401 Query 419 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCCAAGCCGTTTCAAACGCT 478 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 402 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCAAAGCCGTTTCAAACGCT 461 Query 479 TCCTCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCACGGCTGGAA 538 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 462 ACCCCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCATGGCTGGAA 521 Query 539 ACACCGCGAATCTCCCAGAAGGGTCTTTGATGCTGTCTTGTTCAGCAATGAAGTTGATAT 598 |||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 522 ACACCGTGAATCTCCGAGAAGGGTCTTTGATGCTGTGTTGTTCAGCAATGAAGTTGATAT 581 Query 599 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATTACACAGTTTGTAATTCTTGAATC 658 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 582 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATAACACAGTTTGTGATCCTTGAATC 641 Query 659 AAACTCGACTTTCACTGGTTTGCCTAAACCGTTAGTTTTCAATGGGAATCGGGGGAAGTT 718 |||||| ||||||||||||||||||||||| || ||||||||||||||||| | |||||| Sbjct 642 AAACTCTACTTTCACTGGTTTGCCTAAACCTTTGGTTTTCAATGGGAATCGAGCGAAGTT 701 Query 719 CGAGTTTGTTGAGCCGAGGCTGTCTTATGGGAACATTGCAGGAAGATTCAAGAAAGGCGA 778 |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| || Sbjct 702 CGAGTTTGCTGAGCCGAGGCTGAGTTATGGGAACATTGCAGGACGATTCAAGAAAGGAGA 761 Query 779 AAACCCGTTTGTCGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTCGC 838 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 762 AAACCCGTTTGTGGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTGGC 821 Query 839 GGGTATCGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 898 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 TGGTATAGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 881 Query 899 TACCATCAATCTGCTTAGATGGTGCGACGGATACCCTCCGATTCTTCATCTTCAGTTGAA 958 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 882 TACCATCAATCTGCTTAGATGGTGCGATGGATACCCACCGATTCTTCATCTTCAGTTGAA 941 Query 959 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1001 Query 1019 TCAGTACAAGCCGGGGAAGAC-CAGATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1077 |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1002 TCAGTACAAGCCTGGGAAGACTC-GATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1060 Query 1078 CAGATTCGGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGA 1137 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1061 CAGATTCTGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGTGAGTTTATATTCAAGA 1120 Query 1138 TGAAAGCGTACAGTCACAATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1197 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1121 TGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1180 Query 1198 TCCAAGATGTGATCTGTAAAGGAACTGATCTGTTCGACATGCTTCCTGAAGAGTATACAT 1257 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1181 TACAAGATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGAGTATACGT 1240 Query 1258 TCAGGGAAATCATCGGTAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCC 1317 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1241 TCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTATTCCGCAGTTCATCTAC 1300 Query 1318 CAGCTCATCTGATCGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1377 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 CAGCTCATCTGATAGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1360 Query 1378 GGGAAAGTGGCTGATAAGGGTTTGTACTTATCAGCCTTTGTAGTGTTAGGTAATTTGGTT 1437 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1361 GGGAAAGTGGCTGATAAGGGTTTGTTCTTATCAGTCTTTGTAGTGTTAGGTAATTTGGT- 1419 Query 1438 GGGGGAAAACGGCTTATTATCAGTAGAGGGAGTGTGAAACAGAGAATGGTACAGTTTCTT 1497 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1420 GGGGGAAA-CGGCTTATTATCAGTAGAGGGAGTGTGGAACAGAGAATGGTACAGTTTCTT 1478 Query 1498 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1538 Query 1558 AGGGTATATAAC--C-TTAG-CTTGCTTATAATCTCATACTGACCCAT--GTTCCAATGT 1611 |||||||||||| | || | || |||||||||||||||||||||||| |||||||||| Sbjct 1539 AGGGTATATAACAACCTT-GTCT-GCTTATAATCTCATACTGACCCATATGTTCCAATGT 1596 Query 1612 -T-----G---TT-TT--GGGAAGTTTTGCTGGAATAGtctctttctgtctc-catcttt 1658 | | || || ||||||||||||||||||||||||| ||| |||| | ||| | Sbjct 1597 GTTCCCAGAGCTTGTTTTGGGAAGTTTTGCTGGAATAGTCTCTCTCTCTCTCTC-TCTCT 1655 Query 1659 ctctttctct 1668 |||| ||||| Sbjct 1656 CTCTCTCTCT 1665 Score = 163 bits (88), Expect = 5e-39 Identities = 98/103 (95%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1638 tctctttctgtctccatctttctctttctctttttactttcaaactattttcatcatact 1697 ||||| ||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 1685 TCTCTCTCTGTCTCCATCTATCTCTTTCTCTATTAACTTTCAAACTATTTTCATCATACT 1744 Query 1698 ctcGCTTTTAGTCTGTACAATTTAGTGATTTCTTTACATTATT 1740 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1745 CTCGCTTTTAGACTGTACAATTTAGTGATTTCTTTACATTATT 1787 > AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr3:10205308-10207306 FORWARD LENGTH=1772 Length=1772 Score = 610 bits (330), Expect = 1e-173 Identities = 919/1194 (77%), Gaps = 77/1194 (6%) Strand=Plus/Plus Query 227 CATGTCCGATGGATACTAT-AGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTG 285 |||||||||||||||| || | ||| |||||||| || ||||| ||||| |||||||||| Sbjct 181 CATGTCCGATGGATAC-ATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTGTG 239 Query 286 GACAGGATGGTTCTCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGC-TACGAGGA 344 |||| | || || |||| | || | |||||||| | | |||||||| || ||| Sbjct 240 GACA-G--GGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTA-AAGGT 295 Query 345 CTTGATTTCAAG-ACGTA-TATCTTCCTCTTCACCATTG-TGCCTATTT--TCATCTTTG 399 ||||||| ||| || || | | |||||||| ||| |||| |||| | ||||| | Sbjct 296 TTTGATTT-AAGAACATACT-TGTTCCTCTT-TGTGTTGATGCC-ATTTGGT-ATCTTAG 350 Query 400 GAGTCTATTTGCATGGTCAGAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCAC 459 | | ||| | || || || ||| |||| |||||||| ||||| ||||||||||| || | Sbjct 351 CAATTTATCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTC 410 Query 460 CCAAGCCGTTTCAAACGC-TTCCTCATTACTACCATGAGAACGCCT-CCATGGCAA-CAC 516 | ||||| |||||||| | ||||||||||||| ||||||| | | | |||| || | | Sbjct 411 CGAAGCCATTTCAAAC-CATTCCTCATTACTATAATGAGAATG-TTACTATGG-AATCTC 467 Query 517 TCTGCAGTCTTCACGGCT--GGAAACACCGCGAATCTCCCAGAAGGGTCTTT-GATGCTG 573 |||| |||||||| || | |||| | | || || |||||| |||| ||| || || | Sbjct 468 TCTGTAGTCTTCATGGTTGGGGAATTA--GAGACTCGCCCAGACGGGT-TTTCGACGCGG 524 Query 574 TCTTGTTCAGCAATGAAG-TTGATATGCTT-ACTATCCGGTGGAAAGAGCTTTATCCTTA 631 | ||||| || |||| || ||| | || ||| | | ||||| |||||||||||||| Sbjct 525 TTTTGTTTAGTAATG-AGAAAGATCT-TTTAACTGTTAGATGGAATGAGCTTTATCCTTA 582 Query 632 CATTACACAGTTTGTAATTCTTGAATCAAACTCGAC-TTTCACTGGTTTGCCTAAACCGT 690 | | ||||||||||| ||||||||||| || || || ||| ||||||||||||||||| | Sbjct 583 CGTGACACAGTTTGTGATTCTTGAATCTAATTCTACGTTT-ACTGGTTTGCCTAAACCAT 641 Query 691 TAGT-TTTCAATG-GGAATCGGGGGAAGTTCGAGTTTGTTGAGCCGAGGCTGTCTTATGG 748 | || ||| || | | ||| || |||| ||||||| |||||| |||| ||||||| Sbjct 642 TGGTGTTT-AA-GAGTAATAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGG 699 Query 749 GAAC-ATTGCAGGAAGATTCAAGAAAGGCGAAAACCCGTTTGTCGAAGAAGCTTACCAGA 807 | || |||| ||| | || | ||||||||| || ||||||||||||||||| || ||| Sbjct 700 G-ACGATTGGTGGACGGTTTAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAG- 757 Query 808 GGA-TTGCATTGGATCAGCTGATCA-GACTCGCGGGTA-TCGAAGAAGATGATCTGTTGA 864 || |||| ||||||||| || | | || | || |||| || ||||||||||| |||||| Sbjct 758 CGAGTTGCGTTGGATCAGTTGCTTAGGA-TTGCTGGTATTC-AAGAAGATGATTTGTTGA 815 Query 865 TAATGTCTGATGTTGATGAGATTCCTAGCGCTCATACCATCAATCTGCTT-AGATGGTGC 923 |||||||||||||||||||||||||||| |||||||| |||||||| || |||||||| Sbjct 816 TAATGTCTGATGTTGATGAGATTCCTAGTGCTCATACTATCAATCTT-TTGAGATGGTGT 874 Query 924 GACGGATAC-CCTCC-GATTCTTCATCTTCAGTTGAAAAACTACTTATACTCATTCGAGT 981 || | ||| ||||| | ||||||| ||||||||||| || || || || || ||||| | Sbjct 875 GATG-ATATTCCTCCAG-TTCTTCACCTTCAGTTGAAGAATTATTTGTATTCTTTCGAAT 932 Query 982 ACT-TCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATCAGT-ACAAG-CCGGGGAAGA 1038 ||| | || || | ||| ||||||||||| ||||| || | || ||| | || ||||| | Sbjct 933 ACTAT-GTCGATAGCAAGAGCTGGAGAGCGTCTATACACC-GTTACA-GTCCAGGGAAAA 989 Query 1039 C-CAGATACGCTCATTTCCGTCA-AGGCAACACTCTTTTAGCAGATTCGGGTTGGCATTG 1096 | | | || |||||||||||||| || || | | ||||| ||||| || |||||||| Sbjct 990 CGCGG-TATGCTCATTTCCGTCAGAGT-AATGTTATGTTAGCTGATTCTGGATGGCATTG 1047 Query 1097 CAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGATGAAAGCGTACAGTCA--C 1154 || ||||||||| | | || || ||||||||||||||||||||||| || ||||| | Sbjct 1048 TAGCTTCTGTTTCCGTTATATAAGTGAGTTTATATTCAAGATGAAAGCTTATAGTCATTC 1107 Query 1155 AATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAATCCAAGATGTGATCTGT 1214 | ||| | ||||||||||||||||| || || |||| || || |||||||| || || Sbjct 1108 A--GACCGTGTCAGATTCTCTCATTACCTGAATCCAAGGAGGATTCAAGATGTTATTTGC 1165 Query 1215 AAAGGAACTGATCTGTTCGACATGCTT-CCTGAAGAGTATACATTCAGGGAAATCATCGG 1273 |||||||||||| |||| || ||| || |||||||| || ||||||| ||| || || || Sbjct 1166 AAAGGAACTGATTTGTTTGATATG-TTACCTGAAGAATACACATTCAAGGAGATTATAGG 1224 Query 1274 TAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCCCAGC-TCATCTGA-TC 1331 ||| | || || | || ||||||||||| || |||||||| || | | | || | | Sbjct 1225 CAAAATGGGACCTGTACCTCGGTCTTATTCAGCGGTTCATCTTCCTTCGT-ACCT-ACT- 1281 Query 1332 GAAAAA-GCTGAG-AGTTACAAATACTTGTTACCTGGGAACTGCATAAGGGAAA 1383 | | || || ||| ||| ||||||||||||| ||||| || |||||||| |||| Sbjct 1282 GTATAACGCCGAGCAGT-ACAAATACTTGTTGCCTGGTAATTGCATAAGAGAAA 1334 > AT3G26445.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr3:9680120-9680746 REVERSE LENGTH=357 Length=357 Score = 67.6 bits (36), Expect = 4e-10 Identities = 125/166 (75%), Gaps = 14/166 (8%) Strand=Plus/Plus Query 854 TGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGC-GCTCATACCATCAATCTGC 912 |||| |||||||||||||||||||||||||||| || || | ||||| | || || Sbjct 141 TGATTTGTTGATAATGTCTGATGTTGATGAGATCCCGAGTAGA-CATACTGTAAACCTT- 198 Query 913 TT-AGATGGTGCGACG-GAT-ACCCTCCGATTCTTCATCTTCAGTTGAAAAAC--TACTT 967 || ||||||||| | | ||| || | ||| | |||||| | | | || ||| | ||| Sbjct 199 TTGAGATGGTGCAATGAGATTACGCA--GATCCCTCATCTACGGCTCAAGAACAGT-CTT 255 Query 968 ATACTCATTCGAGTAC-TTCGTTGACAACAAAAGCTGGAGAGCTTC 1012 || || || |||| | ||| |||| ||||| |||||||||||||| Sbjct 256 -TATTCGTTTGAGTTCCTTC-TTGATAACAAGAGCTGGAGAGCTTC 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86043734130 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5