BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488289
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14480.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 2495 0.0
AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 610 1e-173
AT3G26445.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransfer... 67.6 4e-10
> AT5G14480.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr5:4667774-4670106 FORWARD LENGTH=1787
Length=1787
Score = 2495 bits (1351), Expect = 0.0
Identities = 1585/1690 (94%), Gaps = 47/1690 (3%)
Strand=Plus/Plus
Query 1 GTTTTCTTAAGAGGAGAAGGATTAGA-TTAAACAGAGATTTTTTCGGATATTTATTCTCT 59
|||||||||||||||||||||||||| |||| | |||||||||||||||| || |
Sbjct 1 GTTTTCTTAAGAGGAGAAGGATTAGATTTAAGC-GAGATTTTTTCGGATA--TA-----T 52
Query 60 CAGACTTCTCTGttttttttttcttctttaattaaattgtttcgtgttttttgtttcgag 119
| | ||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 53 -ATA-TTCTCTG-------TTT-TTCTTTAATTAAATTGTTTCGTG-TTTTTGTTTCGAG 101
Query 120 -tttcttcataaagttttgatttttgtcgggcttcgattttcgGGGTCCGAGAGATTCTT 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 102 TTTTCTTCATAAAGTTTTGATTTTTGTCGGGCTTCGATTTTCGGGGTCCGAGATATTCTT 161
Query 179 CTTCTTATTCGCGAAAATTTCCCCCGAGAAAACTCTTCTGGGTATAACCATGTCCGATGG 238
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 162 CTTCTTCTTCGCGATAATTTCCCCCGAGAAAACTCTTCTGGGTAAAATCATGTCCGATGG 221
Query 239 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 ATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTC 281
Query 299 TCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGCTACGAGGACTTGATTTCAAGAC 358
||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 282 TCGAGCAGCCAAGGCCTTCTCTAGGGTTAGATGTGTACTACGAGGATTTGATTTCAAGAC 341
Query 359 GTATATCTTCCTCTTCACCATTGTGCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 418
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 342 ATATATCTTCTTCTTCACCATTGTCCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCA 401
Query 419 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCCAAGCCGTTTCAAACGCT 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 402 GAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCAAAGCCGTTTCAAACGCT 461
Query 479 TCCTCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCACGGCTGGAA 538
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 462 ACCCCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCATGGCTGGAA 521
Query 539 ACACCGCGAATCTCCCAGAAGGGTCTTTGATGCTGTCTTGTTCAGCAATGAAGTTGATAT 598
|||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 522 ACACCGTGAATCTCCGAGAAGGGTCTTTGATGCTGTGTTGTTCAGCAATGAAGTTGATAT 581
Query 599 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATTACACAGTTTGTAATTCTTGAATC 658
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 582 GCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATAACACAGTTTGTGATCCTTGAATC 641
Query 659 AAACTCGACTTTCACTGGTTTGCCTAAACCGTTAGTTTTCAATGGGAATCGGGGGAAGTT 718
|||||| ||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 642 AAACTCTACTTTCACTGGTTTGCCTAAACCTTTGGTTTTCAATGGGAATCGAGCGAAGTT 701
Query 719 CGAGTTTGTTGAGCCGAGGCTGTCTTATGGGAACATTGCAGGAAGATTCAAGAAAGGCGA 778
|||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 702 CGAGTTTGCTGAGCCGAGGCTGAGTTATGGGAACATTGCAGGACGATTCAAGAAAGGAGA 761
Query 779 AAACCCGTTTGTCGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTCGC 838
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 762 AAACCCGTTTGTGGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTGGC 821
Query 839 GGGTATCGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 898
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TGGTATAGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCA 881
Query 899 TACCATCAATCTGCTTAGATGGTGCGACGGATACCCTCCGATTCTTCATCTTCAGTTGAA 958
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 882 TACCATCAATCTGCTTAGATGGTGCGATGGATACCCACCGATTCTTCATCTTCAGTTGAA 941
Query 959 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 AAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCA 1001
Query 1019 TCAGTACAAGCCGGGGAAGAC-CAGATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1077
|||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1002 TCAGTACAAGCCTGGGAAGACTC-GATACGCTCATTTCCGTCAAGGCAACACTCTTTTAG 1060
Query 1078 CAGATTCGGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGA 1137
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1061 CAGATTCTGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGTGAGTTTATATTCAAGA 1120
Query 1138 TGAAAGCGTACAGTCACAATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1197
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1121 TGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAA 1180
Query 1198 TCCAAGATGTGATCTGTAAAGGAACTGATCTGTTCGACATGCTTCCTGAAGAGTATACAT 1257
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1181 TACAAGATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGAGTATACGT 1240
Query 1258 TCAGGGAAATCATCGGTAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCC 1317
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1241 TCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTATTCCGCAGTTCATCTAC 1300
Query 1318 CAGCTCATCTGATCGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1377
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CAGCTCATCTGATAGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAA 1360
Query 1378 GGGAAAGTGGCTGATAAGGGTTTGTACTTATCAGCCTTTGTAGTGTTAGGTAATTTGGTT 1437
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1361 GGGAAAGTGGCTGATAAGGGTTTGTTCTTATCAGTCTTTGTAGTGTTAGGTAATTTGGT- 1419
Query 1438 GGGGGAAAACGGCTTATTATCAGTAGAGGGAGTGTGAAACAGAGAATGGTACAGTTTCTT 1497
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1420 GGGGGAAA-CGGCTTATTATCAGTAGAGGGAGTGTGGAACAGAGAATGGTACAGTTTCTT 1478
Query 1498 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 GGGACTCGAGGAAGAGTGATCTGATAAGTGGAGTCTCTGGTTTCAGCATTACCTCTCTTG 1538
Query 1558 AGGGTATATAAC--C-TTAG-CTTGCTTATAATCTCATACTGACCCAT--GTTCCAATGT 1611
|||||||||||| | || | || |||||||||||||||||||||||| ||||||||||
Sbjct 1539 AGGGTATATAACAACCTT-GTCT-GCTTATAATCTCATACTGACCCATATGTTCCAATGT 1596
Query 1612 -T-----G---TT-TT--GGGAAGTTTTGCTGGAATAGtctctttctgtctc-catcttt 1658
| | || || ||||||||||||||||||||||||| ||| |||| | ||| |
Sbjct 1597 GTTCCCAGAGCTTGTTTTGGGAAGTTTTGCTGGAATAGTCTCTCTCTCTCTCTC-TCTCT 1655
Query 1659 ctctttctct 1668
|||| |||||
Sbjct 1656 CTCTCTCTCT 1665
Score = 163 bits (88), Expect = 5e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 1638 tctctttctgtctccatctttctctttctctttttactttcaaactattttcatcatact 1697
||||| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1685 TCTCTCTCTGTCTCCATCTATCTCTTTCTCTATTAACTTTCAAACTATTTTCATCATACT 1744
Query 1698 ctcGCTTTTAGTCTGTACAATTTAGTGATTTCTTTACATTATT 1740
||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1745 CTCGCTTTTAGACTGTACAATTTAGTGATTTCTTTACATTATT 1787
> AT3G27540.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr3:10205308-10207306 FORWARD LENGTH=1772
Length=1772
Score = 610 bits (330), Expect = 1e-173
Identities = 919/1194 (77%), Gaps = 77/1194 (6%)
Strand=Plus/Plus
Query 227 CATGTCCGATGGATACTAT-AGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTG 285
|||||||||||||||| || | ||| |||||||| || ||||| ||||| ||||||||||
Sbjct 181 CATGTCCGATGGATAC-ATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTGTG 239
Query 286 GACAGGATGGTTCTCGAGCATCCAAGGCCTTCTCAAGGGTTAGATGTGTGC-TACGAGGA 344
|||| | || || |||| | || | |||||||| | | |||||||| || |||
Sbjct 240 GACA-G--GGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTA-AAGGT 295
Query 345 CTTGATTTCAAG-ACGTA-TATCTTCCTCTTCACCATTG-TGCCTATTT--TCATCTTTG 399
||||||| ||| || || | | |||||||| ||| |||| |||| | ||||| |
Sbjct 296 TTTGATTT-AAGAACATACT-TGTTCCTCTT-TGTGTTGATGCC-ATTTGGT-ATCTTAG 350
Query 400 GAGTCTATTTGCATGGTCAGAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCAC 459
| | ||| | || || || ||| |||| |||||||| ||||| ||||||||||| || |
Sbjct 351 CAATTTATCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTC 410
Query 460 CCAAGCCGTTTCAAACGC-TTCCTCATTACTACCATGAGAACGCCT-CCATGGCAA-CAC 516
| ||||| |||||||| | ||||||||||||| ||||||| | | | |||| || | |
Sbjct 411 CGAAGCCATTTCAAAC-CATTCCTCATTACTATAATGAGAATG-TTACTATGG-AATCTC 467
Query 517 TCTGCAGTCTTCACGGCT--GGAAACACCGCGAATCTCCCAGAAGGGTCTTT-GATGCTG 573
|||| |||||||| || | |||| | | || || |||||| |||| ||| || || |
Sbjct 468 TCTGTAGTCTTCATGGTTGGGGAATTA--GAGACTCGCCCAGACGGGT-TTTCGACGCGG 524
Query 574 TCTTGTTCAGCAATGAAG-TTGATATGCTT-ACTATCCGGTGGAAAGAGCTTTATCCTTA 631
| ||||| || |||| || ||| | || ||| | | ||||| ||||||||||||||
Sbjct 525 TTTTGTTTAGTAATG-AGAAAGATCT-TTTAACTGTTAGATGGAATGAGCTTTATCCTTA 582
Query 632 CATTACACAGTTTGTAATTCTTGAATCAAACTCGAC-TTTCACTGGTTTGCCTAAACCGT 690
| | ||||||||||| ||||||||||| || || || ||| ||||||||||||||||| |
Sbjct 583 CGTGACACAGTTTGTGATTCTTGAATCTAATTCTACGTTT-ACTGGTTTGCCTAAACCAT 641
Query 691 TAGT-TTTCAATG-GGAATCGGGGGAAGTTCGAGTTTGTTGAGCCGAGGCTGTCTTATGG 748
| || ||| || | | ||| || |||| ||||||| |||||| |||| |||||||
Sbjct 642 TGGTGTTT-AA-GAGTAATAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGG 699
Query 749 GAAC-ATTGCAGGAAGATTCAAGAAAGGCGAAAACCCGTTTGTCGAAGAAGCTTACCAGA 807
| || |||| ||| | || | ||||||||| || ||||||||||||||||| || |||
Sbjct 700 G-ACGATTGGTGGACGGTTTAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAG- 757
Query 808 GGA-TTGCATTGGATCAGCTGATCA-GACTCGCGGGTA-TCGAAGAAGATGATCTGTTGA 864
|| |||| ||||||||| || | | || | || |||| || ||||||||||| ||||||
Sbjct 758 CGAGTTGCGTTGGATCAGTTGCTTAGGA-TTGCTGGTATTC-AAGAAGATGATTTGTTGA 815
Query 865 TAATGTCTGATGTTGATGAGATTCCTAGCGCTCATACCATCAATCTGCTT-AGATGGTGC 923
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 816 TAATGTCTGATGTTGATGAGATTCCTAGTGCTCATACTATCAATCTT-TTGAGATGGTGT 874
Query 924 GACGGATAC-CCTCC-GATTCTTCATCTTCAGTTGAAAAACTACTTATACTCATTCGAGT 981
|| | ||| ||||| | ||||||| ||||||||||| || || || || || ||||| |
Sbjct 875 GATG-ATATTCCTCCAG-TTCTTCACCTTCAGTTGAAGAATTATTTGTATTCTTTCGAAT 932
Query 982 ACT-TCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATCAGT-ACAAG-CCGGGGAAGA 1038
||| | || || | ||| ||||||||||| ||||| || | || ||| | || ||||| |
Sbjct 933 ACTAT-GTCGATAGCAAGAGCTGGAGAGCGTCTATACACC-GTTACA-GTCCAGGGAAAA 989
Query 1039 C-CAGATACGCTCATTTCCGTCA-AGGCAACACTCTTTTAGCAGATTCGGGTTGGCATTG 1096
| | | || |||||||||||||| || || | | ||||| ||||| || ||||||||
Sbjct 990 CGCGG-TATGCTCATTTCCGTCAGAGT-AATGTTATGTTAGCTGATTCTGGATGGCATTG 1047
Query 1097 CAGTTTCTGTTTCAGGCACATCAGCGAGTTTATATTCAAGATGAAAGCGTACAGTCA--C 1154
|| ||||||||| | | || || ||||||||||||||||||||||| || ||||| |
Sbjct 1048 TAGCTTCTGTTTCCGTTATATAAGTGAGTTTATATTCAAGATGAAAGCTTATAGTCATTC 1107
Query 1155 AATGACAGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAATCCAAGATGTGATCTGT 1214
| ||| | ||||||||||||||||| || || |||| || || |||||||| || ||
Sbjct 1108 A--GACCGTGTCAGATTCTCTCATTACCTGAATCCAAGGAGGATTCAAGATGTTATTTGC 1165
Query 1215 AAAGGAACTGATCTGTTCGACATGCTT-CCTGAAGAGTATACATTCAGGGAAATCATCGG 1273
|||||||||||| |||| || ||| || |||||||| || ||||||| ||| || || ||
Sbjct 1166 AAAGGAACTGATTTGTTTGATATG-TTACCTGAAGAATACACATTCAAGGAGATTATAGG 1224
Query 1274 TAAACTAGGTCCAATCCCGCGGTCTTATTCTGCAGTTCATCTCCCAGC-TCATCTGA-TC 1331
||| | || || | || ||||||||||| || |||||||| || | | | || | |
Sbjct 1225 CAAAATGGGACCTGTACCTCGGTCTTATTCAGCGGTTCATCTTCCTTCGT-ACCT-ACT- 1281
Query 1332 GAAAAA-GCTGAG-AGTTACAAATACTTGTTACCTGGGAACTGCATAAGGGAAA 1383
| | || || ||| ||| ||||||||||||| ||||| || |||||||| ||||
Sbjct 1282 GTATAACGCCGAGCAGT-ACAAATACTTGTTGCCTGGTAATTGCATAAGAGAAA 1334
> AT3G26445.1 | Symbols: | beta-1,4-N-acetylglucosaminyltransferase
family protein | chr3:9680120-9680746 REVERSE LENGTH=357
Length=357
Score = 67.6 bits (36), Expect = 4e-10
Identities = 125/166 (75%), Gaps = 14/166 (8%)
Strand=Plus/Plus
Query 854 TGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGC-GCTCATACCATCAATCTGC 912
|||| |||||||||||||||||||||||||||| || || | ||||| | || ||
Sbjct 141 TGATTTGTTGATAATGTCTGATGTTGATGAGATCCCGAGTAGA-CATACTGTAAACCTT- 198
Query 913 TT-AGATGGTGCGACG-GAT-ACCCTCCGATTCTTCATCTTCAGTTGAAAAAC--TACTT 967
|| ||||||||| | | ||| || | ||| | |||||| | | | || ||| | |||
Sbjct 199 TTGAGATGGTGCAATGAGATTACGCA--GATCCCTCATCTACGGCTCAAGAACAGT-CTT 255
Query 968 ATACTCATTCGAGTAC-TTCGTTGACAACAAAAGCTGGAGAGCTTC 1012
|| || || |||| | ||| |||| ||||| ||||||||||||||
Sbjct 256 -TATTCGTTTGAGTTCCTTC-TTGATAACAAGAGCTGGAGAGCTTC 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86043734130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5