BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488292
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14510.1 | Symbols: | ARM repeat superfamily protein | chr5... 1744 0.0
> AT5G14510.1 | Symbols: | ARM repeat superfamily protein | chr5:4677973-4679194
REVERSE LENGTH=1136
Length=1136
Score = 1744 bits (944), Expect = 0.0
Identities = 1039/1085 (96%), Gaps = 5/1085 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGATTGTGGTGGAGAGTCTTCTTAGCGGCAACAGAGAGGCTCAAATAGAAGCA 60
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGGAGGAGATTGTGGTAGAGAGTCTTCTTAGCGGTAACAGAGAGTCTCAAATAGAAGCA 60
Query 61 GCTATCGAGCTGAGTAATCTAAGCAGGAAGCAAAGACAAAAATTGGCAGAAAGAGAGATC 120
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTATAGAGCTGACTAATCTAAGCAGGAAGCAAAGACAAAAATTGGCAGAAAGAGAGATC 120
Query 121 ATTTCTCCTTTACTCTCAATGTTACAATCTCAAGACTGTCTCACAACAGAAGTTGCTCTA 180
||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct 121 ATTTCTCCTTTGCTCTCGATGTTACAATCTCAAGACTGTATCACAACAGAGGTTGCTCTA 180
Query 181 TCTGCATTACTCAGCCTTGCCTTTGGCAGTGAAAGGAACAAAGTCCGAATCGTGAAATCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 TCTGCATTACTCAGCCTTGCCTTTGGCAGTGAAAGGAACAAAGTCCGAATTGTGAAATCT 240
Query 241 GGCGCAGTACCAATGTTGCTAGAAATCCTCCAGTCAGAAACGAAGATGGTAGTTCTTGAA 300
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGCGCAGTACCAACGTTGCTAGAAATTCTCCAGTCAGAAACGAAGATGGTAGTTCTTGAA 300
Query 301 TTGGCCATGGCATTTCTTCTGATTCTCTCTTCCTGTAACAAAAACAAGGTTAAGATGGCA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTGGCCATGGCATTTCTTCTGATTCTCTCTTCCTGCAACAAAAACAAGGTTAAGATGGCA 360
Query 361 TCAACCAGGTTGATTCAGCTTTTAGTTGGACTTATTGGGCTCGATAGACTTACCGTTCAG 420
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 361 TCAACCAGGTTGGTTCAGCTTTTAGTTGGACTTATTGGGCTCGATAGACTTACCATCCAG 420
Query 421 GCCAAGGTTGATGCCATAGCAACACTACAAAATCTATCGACTCTCCATCAGATTGTTCCC 480
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GCCAAGGTTGATGGCATAGCAACACTACAAAATCTATCTACTCTCCATCAGATTGTTCCC 480
Query 481 CTGGTTATAGCTTCGGGAGCACCGTATGCTTTGCTTCAAGTCATCAACTGTAGTGATAAA 540
||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||
Sbjct 481 CTGGTTATAGCTTCGGGAGCACCATATGCTTTGCTTCAAGTCATCAACTTTTGCGATAAA 540
Query 541 TCTTCTGAATTGGCTGATAAGGCAGTAGCTTTGCTTGAAAACATAACTTCTCATTCACCA 600
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TCTTCCGAATTGGCTGATAAGGCAGTAGCTTTGCTTGAAAACATAATTTCTCATTCACCA 600
Query 601 GAATCTGTTTCCAGCATCGGTGGAGCAATTAGGGTTCTGGTGGAAGCCATCGAAGAAGGG 660
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 GAATCTGTTTCCAGCATCGGTGGAGCAATTGGGGTTCTGGTGGAAGCCATTGAAGAAGGG 660
Query 661 TCAGCCCAGTGTAAAGAGCACGGCGTAGGAATATTACTTGGTGTATGCAACAACGACAGA 720
||||| |||||||||||||| | ||| |||||| |||||||| |||||||||||||||||
Sbjct 661 TCAGCACAGTGTAAAGAGCATGCCGTGGGAATACTACTTGGTATATGCAACAACGACAGA 720
Query 721 GAGACAAACCGAGGAATGATACTGAGAGAAGGAGTGATGCCCGGATTGCTTCAAGTGAGC 780
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 721 GAGACAAACCGAGGAATGATACTTAGAGAAGGAGTGATGCCTGGATTGCTTCAAGTGAGC 780
Query 781 GTAGACGGGACACGGAGGGCTAAAGAAATGGCTAGAGAGCTATTGCTACTACTAAGGGAC 840
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 GTAGACGGGACACGGAGGGCTAAAGAAATGGCTAGAGAGCTACTGCTACTACTAAGGGAC 840
Query 841 TGCTCTGGCTATGTCATCAAAAACAAACAGTCAAAGATTGAGATTGTAGAGCAAATTATG 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 TGCTCTGGCTATGTCATCAAAAACAAACAGTCAAAGATTGAGATTGTTGAGCAAATTATG 900
Query 901 CGGGAGATTGATCAAGAAGGAGAGCGAATACCCGGAACCATGTTGAAGTTGGTAGAAGAG 960
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 CGGGAGATTGATCAAGAAGGAGAGCGAATACCTGGAACCATGTTGAAGTTGGTAGAAGAG 960
Query 961 ATGATTTCCAAACTCAGCACATAGCCT--TGGTTGCATCCCAGATCTTGTATATATAAAA 1018
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct 961 ATGATTTCCAAACTCAGCACATAACCCCCTGGTTGCATTCCAGATCTTGTATATATAAAA 1020
Query 1019 CCATGTACTGTTTCACAGAAAGAGAGCCTTCTTCTTAGGAATAATTGTTACCA---TCTT 1075
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1021 CCATGTACTGTTTCACAGAAAGAGAGACTTCTTCTTAGGAATAATTGTTACCACCATCTT 1080
Query 1076 ATTGC 1080
|||||
Sbjct 1081 ATTGC 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53011775520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5