BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488299 Length=3401 Score E Sequences producing significant alignments: (Bits) Value AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransfe... 5084 0.0 > AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697240-4703084 REVERSE LENGTH=3419 Length=3419 Score = 5084 bits (2753), Expect = 0.0 Identities = 3220/3439 (94%), Gaps = 58/3439 (2%) Strand=Plus/Plus Query 1 GGTGCGTTAAACCC-TTCCCGTtctccttccctctctctctctactactccacatctccc 59 |||||||||||||| || ||||||| | | || | |||||| | |||| |||||| | Sbjct 1 GGTGCGTTAAACCCTTTTCCGTTCT-CAT---TC-C-CTCTCT--T-CTCCGCATCTCTC 51 Query 60 actctctctGTGTATGTATAATGTCATCGATTGTGAATCGAGCTAGGTCAACATCTCTTC 119 ||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||||||| Sbjct 52 ACTCTCTCTGTGTATGTGTGATGTCATCGATTGTGAATCGAGCTAGTTCAGCTTCTCTTC 111 Query 120 CTAATTTCCTCGCATGGCGTGCTTTGGGTTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 179 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 112 CTAATTTCCTCGCATGGCGTGCTCTGGGGTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 171 Query 180 TCGCTCCGTCTAATCCAGACTCGCCGGCCTCTGCAGGAACCAAAATTTTGGAGTC-TTTA 238 ||||||||||| |||||||||||||| ||| |||||||||||||||||||| || ||| Sbjct 172 TCGCTCCGTCTGTTCCAGACTCGCCGGTCTCCGCAGGAACCAAAATTTTGGAATCATTT- 230 Query 239 AAGGAGGAATTCGAAGTCGGATCCCGAGTGGTCTCCTTTGAGACGGGAAAAATCGCCCGC 298 |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||| Sbjct 231 AAGGAGGAATTCGAAGTCGGATCCCGCGTGGTCTCGTTTGAGACTGGAAAAATCGCTCGC 290 Query 299 TTTGCAAATGGGTCCGTCGTCCTCGGCATGGACCAGACCAAAGTGCTCTCTACTGTTACT 358 ||||| ||||| || || || |||||||||||| |||||||||| ||||||||||||||| Sbjct 291 TTTGCTAATGGTTCAGTTGTTCTCGGCATGGACGAGACCAAAGTTCTCTCTACTGTTACT 350 Query 359 TGTGCTAAGACTGACTCGCCTCGGGACTTCTTGCCTCTCACTGTTGACTATCAAGAGAAG 418 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 351 TGTGCTAAGACCGACTCGCCTCGGGACTTCTTACCTCTCACTGTTGACTATCAAGAGAAG 410 Query 419 CAATACGCTCAGGGTTTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 478 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 CAATACGCTCAGGGATTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 470 Query 479 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTTCAGGG 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 471 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTACAGGG 530 Query 539 TTTTACCATGAAGTTCAGATAATGGCTAGTGTTCTATCGTCGGATGGGAAGCAGGATCCA 598 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 531 TTTTACCATGAAGTTCAGATAATGGCAAGTGTTCTATCGTCAGATGGGAAGCAGGATCCA 590 Query 599 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 650 Query 659 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCGACT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 651 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCAACT 710 Query 719 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 770 Query 779 ATGATGATTGATGTTCAATCCCGTGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 838 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 771 ATGATGATTGATGTTCAATCCCGAGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 830 Query 839 CTAGCTCATCCAGAGGCTGTTAAGTACCTTGATCCCCAAATAAGATTGGCAGAAAAAGCT 898 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 831 CTAGCTCATCCAGAGGCTGTCAAGTACCTTGATCCCCAAATTAGATTGGCAGAAAAAGCT 890 Query 899 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGAGAAAACTTTAGAAAAAGTG 958 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 891 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGATAAAACTTTAGAAAAAGTG 950 Query 959 ACTGACTTGGCTGCAACACGTATTGAATCCGTCTTCACCGACCCTTCATATGGAAAGTTT 1018 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 951 GCTGACTTGGCTGCAACGCGTATTGAATCCGTCTTTACCGACCCTTCATATGGAAAGTTT 1010 Query 1019 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAAGTATTTGAAGAAGAG 1078 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1011 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAGGTATTTGAAGAAGAG 1070 Query 1079 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGGGAAAGAAGGTA 1138 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1071 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGAGAAAGAAGGTA 1130 Query 1139 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGAAGACATCTTGATGAAGTT 1198 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1131 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGGAGACATGTTGATGAAGTT 1190 Query 1199 AGGCCCATCTACTGTGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCT 1258 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 AGGCCCATCTACTGCGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCA 1250 Query 1259 CGTGGAGATACGCAGGTGCTCTGTACTGTCACACTTGGAGCCCCGGGAGAGGCACAAAGC 1318 ||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||| Sbjct 1251 CGTGGAGATACGCAGGTGCTCTGTACTGTAACACTTGGAGCCCCAGCAGAAGCACAAAGC 1310 Query 1319 TTGGATTCCCTTGTTGGCCCCCCGAAAAAGAGATTTATGCTTCACTACAGCTTTCCACCA 1378 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct 1311 TTGGATTCTCTTGTTGGCCCCCCGAAGAAGAGATTCATGCTTCACTACAGCTTTCCTCCA 1370 Query 1379 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1371 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1430 Query 1439 ACACTTGCTGAGAAAGCATTGCTTGCTGTCTTGCCCCCCGAAGAGGCTTTTCCTTATACT 1498 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1431 ACACTTGCTGAGAAAGCATTGCTTGCTGTATTGCCCCCTGAAGAGGCTTTTCCTTATACC 1490 Query 1499 GTTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGTGTTTGT 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1491 ATTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGCGTTTGT 1550 Query 1559 GGAGGTAGTATGGCATTGATGGATGCCGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1618 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1551 GGAGGTAGTATGGCATTGATGGATGCTGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1610 Query 1619 TCCGTTGGTCTTATCACCGATGTGGATCCATCAAGTGGTGAAATAAAGGACTACCGTATA 1678 || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1611 TCTGTTGGTCTTATCACCGATGTAGATCCATCAAGTGGTGAAATAAAGGACTACCGTATT 1670 Query 1679 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1730 Query 1739 ACACGAAATGGTGTGACGGCGATTCAGCTGGATATAAAGCCAGCTGGAATACCATTGGAC 1798 |||||| |||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 1731 ACACGAGATGGTGTGACAGCAATTCAGCTGGATATAAAGCCAGCTGGAATACCGTTGGAT 1790 Query 1799 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1791 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1850 Query 1859 GAGAGAAACATAAATTCCCCCCGAGCCCAGGATGGGGCTTATTCACCTCGGCTAGCAACG 1918 |||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||| Sbjct 1851 GAGAGAAACATAAATTCCCCACGAGGCCAGGATGGGGCTTACTCTCCTCGGCTAGCAACG 1910 Query 1919 TTCAAGTACACCAATGACTCACTTCGTAGCTTGATCGGACCTATGGGTGTACTCAAAAGA 1978 |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1911 CTCAAGTACTCCAATGACTCACTTCGTACCTTGATCGGACCTATGGGTGTACTCAAAAGA 1970 Query 1979 AAGATTGAAGAGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2038 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1971 AAGATTGAAGTGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2030 Query 2039 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAA-AAGGTTGACTTCATCATTGGTCG 2097 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 2031 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAACAAG-TTGACTTCATCATTGGTCG 2089 Query 2098 TGAAATAGTTGTTGGTGGCGTGTACAAAGGCACAGTGACATCTATAAAAGAGTATGGTGC 2157 |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 2090 TGAACTAGTTGTTGGTGGTGTGTACAAAGGCACAGTGTCATCTATAAAAGAGTATGGTGC 2149 Query 2158 ATTTGTTGAGTTCAGTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCTCATGA 2217 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2150 ATTTGTTGAGTTCCCTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCCCATGA 2209 Query 2218 ACCAGTCTCCAAGGTTTCAGATGTATTACATATTGGCCAGTACATCACTACGATGTGCAT 2277 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 2210 ACCAGTCTCCAAGGTTTCAGATGTATTAGATATTGGCCAGTGCATCACTACGATGTGCAT 2269 Query 2278 CGAAACCGATGTCCGGGGTAACATTAAATTATCCCGCAAAGCAATGTTGCCCAAACCCGA 2337 |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | Sbjct 2270 TGAAACCGATGTCCGTGGTAACATTAAATTATCCCGCAAAGCACTGTTGCCCAAACCCAA 2329 Query 2338 GCGCAAACCAGCATCTGATGCTGGAAAAGACTC-GGTGATGAAAGAGTCGTCAACTGTCT 2396 |||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||| Sbjct 2330 ACGCAAACCCGCATCTGATGCTGGAAAAGA-TCCGGTGATGAAAGAGTCGTCAACAGTCT 2388 Query 2397 ACACAGAAACGTCTAGTGTTGGAGAGACTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2456 ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2389 ACATAGAAAATTCTAGTGTTGGAGAGATTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2448 Query 2457 CTCAGAAATCTAAATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTCATG 2516 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2449 TTCAGAAATCTAGATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTAATG 2508 Query 2517 AGGCAGAGAAATCTTCCCCTGTGAACAAGAATGACAAACCCAAACGCGCTACGACACCGA 2576 |||||||||||||||||||||||||| | || |||||||||| ||||||| | ||| | | Sbjct 2509 AGGCAGAGAAATCTTCCCCTGTGAACGACAACGACAAACCCAGACGCGCTGCTACATCAA 2568 Query 2577 AGCCAGACCGGAAACCCAAATCCACTGCCTCTAAACTGACTGCGACACAGAAGGAAGAGG 2636 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 2569 AGCCAGACCGGAAACCCAAATCCACAGCCTCTAAACTGATTGCGACACAGAAGGAAGAGG 2628 Query 2637 AGGTACTCGAATCCATTGCTCCAGAAGAAACTCCAGCTGAATGCGGTGAGACACTGAAGC 2696 ||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| Sbjct 2629 AGGCACTCGAATCCATTGCTCCAGAAGAAACTTCAGCTGAATGTGGTGAGATACTGAAGC 2688 Query 2697 AGGACGGGAAGCTAAAATCCGCTTCGCCCAAAAACAGTAGCACTGATTCTAACCTAGTAT 2756 ||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||| Sbjct 2689 AGGACGGGAAGCTAAAATCCGTTTCTCCCAAAAACAATAGCACTGCTTCTAACCTAGTAT 2748 Query 2757 CATCTTCAAAAGCTAAGAAATCAACTAGGAAGGAGAATCAATCAGAGAACAAGGCTGAAG 2816 ||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 2749 CATTTTCAAAAGCTAAGAAATCAACTATGAAGGAGAATCTATCAGAGAACAAGGCTGAAG 2808 Query 2817 AGAGTGCATTCG-TTAGTACCCGAAATCTGAAAATAGGAACAGAAATGACGGCCAAGGTC 2875 ||||||||| || ||||||||||||| |||||||||||||| || ||||| |||| |||| Sbjct 2809 AGAGTGCAT-CGGTTAGTACCCGAAAACTGAAAATAGGAACGGAGATGACAGCCACGGTC 2867 Query 2876 CACGA-GATTCGAGCCCGTGGATTGGTTCTTGATTTAGGTGGTGAACTCCGTGGTATGTA 2934 || | | ||||||||| |||||||||||||||||||||||||||| |||| |||||||| Sbjct 2868 GACCATG-TTCGAGCCCTTGGATTGGTTCTTGATTTAGGTGGTGAAATCCGCGGTATGTA 2926 Query 2935 CAAATTCAAGGAAGATGAAGAGACAGAGTTTGAAGAGGGAGACACATTGCAAGTGAAATG 2994 || |||| ||| |||| || ||| | |||| || | ||||||||||||| ||||||||| Sbjct 2927 CATATTCCAGGGAGAT-AA-AGATA-AGTTCAAAAAAGGAGACACATTGCGAGTGAAATG 2983 Query 2995 TACAAGTTTTAGTACTAAAGGAATCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3054 ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2984 TACAAGTTTTAACACCAAAGGAGTCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3043 Query 3055 ATAGTGGTAAACTCTCTTTCCTCTCTAGAAGGTTTTT--AACCCAAGG--T--T------ 3102 |||||||||||||||||||||| |||| ||||||||| ||||||||| | | Sbjct 3044 ATAGTGGTAAACTCTCTTTCCTTTCTACAAGGTTTTTTCAACCCAAGGGATCATGTGGAG 3103 Query 3103 -C-AT-A-------C----GAGAGTTTTGCTTGAAATGTTTTTAAT-ATACGGATCGAAT 3147 | || | | ||||||||||||||||||||||||| | ||||||||||||| Sbjct 3104 TCGATCATATGGATCATACGAGAGTTTTGCTTGAAATGTTTTTA-TCATACGGATCGAAT 3162 Query 3148 CAAGAGAAGATCTTTAGCTGCTTTTGATGAGCAAATCTTGGTAGAT--A--GATTCATTG 3203 ||||||| | || ||||||||||||| ||||||||||||||||||| | ||||||||| Sbjct 3163 CAAGAGATGCTCGTTAGCTGCTTTTGGTGAGCAAATCTTGGTAGATGGATAGATTCATTG 3222 Query 3204 GCGTCACAACTTGAGGAAAACTAATGAAATCAGTTAGCGTAACTCGTCTTTTACTTTGGC 3263 ||||||||||||||||||| |||||||| || ||||| |||||| ||||||||||||||| Sbjct 3223 GCGTCACAACTTGAGGAAAGCTAATGAACTCGGTTAG-GTAACTAGTCTTTTACTTTGGC 3281 Query 3264 CTTGTGATGTGCCGTTTTGTTTCTCTTTTATTGGGTGG-TTTTGTGGAACCGAAAGTGGA 3322 ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 3282 CTTGTGATGTGCCATTTTGTTTCTCTTTTATTGGGGGGGTTTTGTGGAACCGAAAGTGGA 3341 Query 3323 TTGTATGGTTTAGTGTTTTAGTAACTGACGTATGAAAGGTGCGTAACGTTAAGTTTCATC 3382 |||||| ||||||||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 3342 TTGTATTGTTTAGTGTCTTAGTAACTGACGTCTGAAAGGTGCGTAACGC-AAGTTTCATC 3400 Query 3383 TTTTTTGTCCAATTTCTAC 3401 |||||||||||||| ||| Sbjct 3401 ATTTTTGTCCAATTTTTAC 3419 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 169263265682 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5