BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488299
Length=3401
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransfe... 5084 0.0
> AT5G14580.1 | Symbols: | polyribonucleotide nucleotidyltransferase,
putative | chr5:4697240-4703084 REVERSE LENGTH=3419
Length=3419
Score = 5084 bits (2753), Expect = 0.0
Identities = 3220/3439 (94%), Gaps = 58/3439 (2%)
Strand=Plus/Plus
Query 1 GGTGCGTTAAACCC-TTCCCGTtctccttccctctctctctctactactccacatctccc 59
|||||||||||||| || ||||||| | | || | |||||| | |||| |||||| |
Sbjct 1 GGTGCGTTAAACCCTTTTCCGTTCT-CAT---TC-C-CTCTCT--T-CTCCGCATCTCTC 51
Query 60 actctctctGTGTATGTATAATGTCATCGATTGTGAATCGAGCTAGGTCAACATCTCTTC 119
||||||||||||||||| | |||||||||||||||||||||||||| ||| | |||||||
Sbjct 52 ACTCTCTCTGTGTATGTGTGATGTCATCGATTGTGAATCGAGCTAGTTCAGCTTCTCTTC 111
Query 120 CTAATTTCCTCGCATGGCGTGCTTTGGGTTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 179
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 112 CTAATTTCCTCGCATGGCGTGCTCTGGGGTTTCGCACCATCTGCTCCGGCCGCCTTGGTT 171
Query 180 TCGCTCCGTCTAATCCAGACTCGCCGGCCTCTGCAGGAACCAAAATTTTGGAGTC-TTTA 238
||||||||||| |||||||||||||| ||| |||||||||||||||||||| || |||
Sbjct 172 TCGCTCCGTCTGTTCCAGACTCGCCGGTCTCCGCAGGAACCAAAATTTTGGAATCATTT- 230
Query 239 AAGGAGGAATTCGAAGTCGGATCCCGAGTGGTCTCCTTTGAGACGGGAAAAATCGCCCGC 298
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 231 AAGGAGGAATTCGAAGTCGGATCCCGCGTGGTCTCGTTTGAGACTGGAAAAATCGCTCGC 290
Query 299 TTTGCAAATGGGTCCGTCGTCCTCGGCATGGACCAGACCAAAGTGCTCTCTACTGTTACT 358
||||| ||||| || || || |||||||||||| |||||||||| |||||||||||||||
Sbjct 291 TTTGCTAATGGTTCAGTTGTTCTCGGCATGGACGAGACCAAAGTTCTCTCTACTGTTACT 350
Query 359 TGTGCTAAGACTGACTCGCCTCGGGACTTCTTGCCTCTCACTGTTGACTATCAAGAGAAG 418
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 351 TGTGCTAAGACCGACTCGCCTCGGGACTTCTTACCTCTCACTGTTGACTATCAAGAGAAG 410
Query 419 CAATACGCTCAGGGTTTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 478
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CAATACGCTCAGGGATTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAG 470
Query 479 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTTCAGGG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 471 CGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTACAGGG 530
Query 539 TTTTACCATGAAGTTCAGATAATGGCTAGTGTTCTATCGTCGGATGGGAAGCAGGATCCA 598
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 531 TTTTACCATGAAGTTCAGATAATGGCAAGTGTTCTATCGTCAGATGGGAAGCAGGATCCA 590
Query 599 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGA 650
Query 659 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCGACT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 GGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCAACT 710
Query 719 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACT 770
Query 779 ATGATGATTGATGTTCAATCCCGTGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 838
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 771 ATGATGATTGATGTTCAATCCCGAGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGG 830
Query 839 CTAGCTCATCCAGAGGCTGTTAAGTACCTTGATCCCCAAATAAGATTGGCAGAAAAAGCT 898
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 831 CTAGCTCATCCAGAGGCTGTCAAGTACCTTGATCCCCAAATTAGATTGGCAGAAAAAGCT 890
Query 899 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGAGAAAACTTTAGAAAAAGTG 958
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 891 GGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGATAAAACTTTAGAAAAAGTG 950
Query 959 ACTGACTTGGCTGCAACACGTATTGAATCCGTCTTCACCGACCCTTCATATGGAAAGTTT 1018
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 GCTGACTTGGCTGCAACGCGTATTGAATCCGTCTTTACCGACCCTTCATATGGAAAGTTT 1010
Query 1019 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAAGTATTTGAAGAAGAG 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1011 GAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAGGTATTTGAAGAAGAG 1070
Query 1079 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGGGAAAGAAGGTA 1138
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1071 GGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGAGAAAGAAGGTA 1130
Query 1139 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGAAGACATCTTGATGAAGTT 1198
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1131 GTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGGAGACATGTTGATGAAGTT 1190
Query 1199 AGGCCCATCTACTGTGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCT 1258
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 AGGCCCATCTACTGCGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCA 1250
Query 1259 CGTGGAGATACGCAGGTGCTCTGTACTGTCACACTTGGAGCCCCGGGAGAGGCACAAAGC 1318
||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||
Sbjct 1251 CGTGGAGATACGCAGGTGCTCTGTACTGTAACACTTGGAGCCCCAGCAGAAGCACAAAGC 1310
Query 1319 TTGGATTCCCTTGTTGGCCCCCCGAAAAAGAGATTTATGCTTCACTACAGCTTTCCACCA 1378
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1311 TTGGATTCTCTTGTTGGCCCCCCGAAGAAGAGATTCATGCTTCACTACAGCTTTCCTCCA 1370
Query 1379 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGA 1430
Query 1439 ACACTTGCTGAGAAAGCATTGCTTGCTGTCTTGCCCCCCGAAGAGGCTTTTCCTTATACT 1498
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1431 ACACTTGCTGAGAAAGCATTGCTTGCTGTATTGCCCCCTGAAGAGGCTTTTCCTTATACC 1490
Query 1499 GTTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGTGTTTGT 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1491 ATTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGCGTTTGT 1550
Query 1559 GGAGGTAGTATGGCATTGATGGATGCCGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1618
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1551 GGAGGTAGTATGGCATTGATGGATGCTGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTA 1610
Query 1619 TCCGTTGGTCTTATCACCGATGTGGATCCATCAAGTGGTGAAATAAAGGACTACCGTATA 1678
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1611 TCTGTTGGTCTTATCACCGATGTAGATCCATCAAGTGGTGAAATAAAGGACTACCGTATT 1670
Query 1679 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 GTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGC 1730
Query 1739 ACACGAAATGGTGTGACGGCGATTCAGCTGGATATAAAGCCAGCTGGAATACCATTGGAC 1798
|||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 1731 ACACGAGATGGTGTGACAGCAATTCAGCTGGATATAAAGCCAGCTGGAATACCGTTGGAT 1790
Query 1799 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 ATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATG 1850
Query 1859 GAGAGAAACATAAATTCCCCCCGAGCCCAGGATGGGGCTTATTCACCTCGGCTAGCAACG 1918
|||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||
Sbjct 1851 GAGAGAAACATAAATTCCCCACGAGGCCAGGATGGGGCTTACTCTCCTCGGCTAGCAACG 1910
Query 1919 TTCAAGTACACCAATGACTCACTTCGTAGCTTGATCGGACCTATGGGTGTACTCAAAAGA 1978
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1911 CTCAAGTACTCCAATGACTCACTTCGTACCTTGATCGGACCTATGGGTGTACTCAAAAGA 1970
Query 1979 AAGATTGAAGAGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2038
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 AAGATTGAAGTGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTT 2030
Query 2039 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAA-AAGGTTGACTTCATCATTGGTCG 2097
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2031 GCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAACAAG-TTGACTTCATCATTGGTCG 2089
Query 2098 TGAAATAGTTGTTGGTGGCGTGTACAAAGGCACAGTGACATCTATAAAAGAGTATGGTGC 2157
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2090 TGAACTAGTTGTTGGTGGTGTGTACAAAGGCACAGTGTCATCTATAAAAGAGTATGGTGC 2149
Query 2158 ATTTGTTGAGTTCAGTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCTCATGA 2217
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2150 ATTTGTTGAGTTCCCTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCCCATGA 2209
Query 2218 ACCAGTCTCCAAGGTTTCAGATGTATTACATATTGGCCAGTACATCACTACGATGTGCAT 2277
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2210 ACCAGTCTCCAAGGTTTCAGATGTATTAGATATTGGCCAGTGCATCACTACGATGTGCAT 2269
Query 2278 CGAAACCGATGTCCGGGGTAACATTAAATTATCCCGCAAAGCAATGTTGCCCAAACCCGA 2337
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2270 TGAAACCGATGTCCGTGGTAACATTAAATTATCCCGCAAAGCACTGTTGCCCAAACCCAA 2329
Query 2338 GCGCAAACCAGCATCTGATGCTGGAAAAGACTC-GGTGATGAAAGAGTCGTCAACTGTCT 2396
|||||||| |||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 2330 ACGCAAACCCGCATCTGATGCTGGAAAAGA-TCCGGTGATGAAAGAGTCGTCAACAGTCT 2388
Query 2397 ACACAGAAACGTCTAGTGTTGGAGAGACTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2456
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2389 ACATAGAAAATTCTAGTGTTGGAGAGATTGTTGCAAGCATGCCCAGTATCGTAACGCCAC 2448
Query 2457 CTCAGAAATCTAAATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTCATG 2516
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2449 TTCAGAAATCTAGATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTAATG 2508
Query 2517 AGGCAGAGAAATCTTCCCCTGTGAACAAGAATGACAAACCCAAACGCGCTACGACACCGA 2576
|||||||||||||||||||||||||| | || |||||||||| ||||||| | ||| | |
Sbjct 2509 AGGCAGAGAAATCTTCCCCTGTGAACGACAACGACAAACCCAGACGCGCTGCTACATCAA 2568
Query 2577 AGCCAGACCGGAAACCCAAATCCACTGCCTCTAAACTGACTGCGACACAGAAGGAAGAGG 2636
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 2569 AGCCAGACCGGAAACCCAAATCCACAGCCTCTAAACTGATTGCGACACAGAAGGAAGAGG 2628
Query 2637 AGGTACTCGAATCCATTGCTCCAGAAGAAACTCCAGCTGAATGCGGTGAGACACTGAAGC 2696
||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 2629 AGGCACTCGAATCCATTGCTCCAGAAGAAACTTCAGCTGAATGTGGTGAGATACTGAAGC 2688
Query 2697 AGGACGGGAAGCTAAAATCCGCTTCGCCCAAAAACAGTAGCACTGATTCTAACCTAGTAT 2756
||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||
Sbjct 2689 AGGACGGGAAGCTAAAATCCGTTTCTCCCAAAAACAATAGCACTGCTTCTAACCTAGTAT 2748
Query 2757 CATCTTCAAAAGCTAAGAAATCAACTAGGAAGGAGAATCAATCAGAGAACAAGGCTGAAG 2816
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2749 CATTTTCAAAAGCTAAGAAATCAACTATGAAGGAGAATCTATCAGAGAACAAGGCTGAAG 2808
Query 2817 AGAGTGCATTCG-TTAGTACCCGAAATCTGAAAATAGGAACAGAAATGACGGCCAAGGTC 2875
||||||||| || ||||||||||||| |||||||||||||| || ||||| |||| ||||
Sbjct 2809 AGAGTGCAT-CGGTTAGTACCCGAAAACTGAAAATAGGAACGGAGATGACAGCCACGGTC 2867
Query 2876 CACGA-GATTCGAGCCCGTGGATTGGTTCTTGATTTAGGTGGTGAACTCCGTGGTATGTA 2934
|| | | ||||||||| |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2868 GACCATG-TTCGAGCCCTTGGATTGGTTCTTGATTTAGGTGGTGAAATCCGCGGTATGTA 2926
Query 2935 CAAATTCAAGGAAGATGAAGAGACAGAGTTTGAAGAGGGAGACACATTGCAAGTGAAATG 2994
|| |||| ||| |||| || ||| | |||| || | ||||||||||||| |||||||||
Sbjct 2927 CATATTCCAGGGAGAT-AA-AGATA-AGTTCAAAAAAGGAGACACATTGCGAGTGAAATG 2983
Query 2995 TACAAGTTTTAGTACTAAAGGAATCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3054
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2984 TACAAGTTTTAACACCAAAGGAGTCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGA 3043
Query 3055 ATAGTGGTAAACTCTCTTTCCTCTCTAGAAGGTTTTT--AACCCAAGG--T--T------ 3102
|||||||||||||||||||||| |||| ||||||||| ||||||||| | |
Sbjct 3044 ATAGTGGTAAACTCTCTTTCCTTTCTACAAGGTTTTTTCAACCCAAGGGATCATGTGGAG 3103
Query 3103 -C-AT-A-------C----GAGAGTTTTGCTTGAAATGTTTTTAAT-ATACGGATCGAAT 3147
| || | | ||||||||||||||||||||||||| | |||||||||||||
Sbjct 3104 TCGATCATATGGATCATACGAGAGTTTTGCTTGAAATGTTTTTA-TCATACGGATCGAAT 3162
Query 3148 CAAGAGAAGATCTTTAGCTGCTTTTGATGAGCAAATCTTGGTAGAT--A--GATTCATTG 3203
||||||| | || ||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 3163 CAAGAGATGCTCGTTAGCTGCTTTTGGTGAGCAAATCTTGGTAGATGGATAGATTCATTG 3222
Query 3204 GCGTCACAACTTGAGGAAAACTAATGAAATCAGTTAGCGTAACTCGTCTTTTACTTTGGC 3263
||||||||||||||||||| |||||||| || ||||| |||||| |||||||||||||||
Sbjct 3223 GCGTCACAACTTGAGGAAAGCTAATGAACTCGGTTAG-GTAACTAGTCTTTTACTTTGGC 3281
Query 3264 CTTGTGATGTGCCGTTTTGTTTCTCTTTTATTGGGTGG-TTTTGTGGAACCGAAAGTGGA 3322
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 3282 CTTGTGATGTGCCATTTTGTTTCTCTTTTATTGGGGGGGTTTTGTGGAACCGAAAGTGGA 3341
Query 3323 TTGTATGGTTTAGTGTTTTAGTAACTGACGTATGAAAGGTGCGTAACGTTAAGTTTCATC 3382
|||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 3342 TTGTATTGTTTAGTGTCTTAGTAACTGACGTCTGAAAGGTGCGTAACGC-AAGTTTCATC 3400
Query 3383 TTTTTTGTCCAATTTCTAC 3401
|||||||||||||| |||
Sbjct 3401 ATTTTTGTCCAATTTTTAC 3419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169263265682
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5