BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488300
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14590.1 | Symbols: | Isocitrate/isopropylmalate dehydrogen... 2497 0.0
> AT5G14590.1 | Symbols: | Isocitrate/isopropylmalate dehydrogenase
family protein | chr5:4703298-4706738 REVERSE LENGTH=1804
Length=1804
Score = 2497 bits (1352), Expect = 0.0
Identities = 1546/1633 (95%), Gaps = 39/1633 (2%)
Strand=Plus/Plus
Query 1 CTCAGAGCACGCTTTAGCAATAAACTTG--G--CG-AAGCT--A-TTTCA--GATTCAGT 50
|||||||||| ||||||||||||||||| | || ||||| | |||| ||||||||
Sbjct 13 CTCAGAGCACACTTTAGCAATAAACTTGCCGACCGAAAGCTGCAGATTCACTGATTCAGT 72
Query 51 GGTCGAAGTTGA-AGGAAAGATTAGAGGTCGGAGTATCGGATGCTGAATAAGCTCACGCA 109
| |||||||||| || | || ||||||||||| ||||||||||||||||||||||||
Sbjct 73 GATCGAAGTTGAGAGTTTGGGTT-GAGGTCGGAGTCTCGGATGCTGAATAAGCTCACGCA 131
Query 110 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CGGCGTTTTCACGTACCGTGCCAGCCTCACCGCCATGTTATCTTCTTCAACCTCTGCTGG 191
Query 170 TTTATCGTCTTCGTTCGCTTCTACTAGGAATTCATGGAAGTCTCCGGGATTTCTCAGTTC 229
||||||||||||||||| || | | ||| | | ||||||| |||||
Sbjct 192 TTTATCGTCTTCGTTCG-TT-T-C------TTC---G-A--------GATTTCTTAGTTC 230
Query 230 CGGTATATTCTTTGGTGGCGCTTCGAGGAATCGTGTTTCTTTTCACGTTCAGTCTCATCG 289
||||||||||| | ||||||||||||||||||| || |||||| |||||||| ||||||
Sbjct 231 CGGTATATTCTCTAGTGGCGCTTCGAGGAATCGCGTGACTTTTCCCGTTCAGTTTCATCG 290
Query 290 CGCATCAGCTGTTCGATGTTTTGCCTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 349
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 CGCATCAGCTGTTCGATGTTTTGCTTCTTCAGGCGGTTCTGATAGAATTCAGGTTCAGAA 350
Query 350 TCCTATCGTTGAAATGGACGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 409
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCCTATCGTTGAAATGGATGGCGATGAAATGACGAGGGTGATATGGAGTATGATAAAGGA 410
Query 410 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GAAACTTATTCTTCCTTATCTGGATTTGGACATTAAGTACTTCGACTTGGGGATTCTGAA 470
Query 470 TCGTGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 529
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCGCGATGCTACTGATGACAAGGTTACAGTTGAAAGTGCAGAAGCAGCTCTTAAGTACAA 530
Query 530 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGTTGCTATCAAATGTGCCACTATAACTCCTGATGAGGGTAGAGTGAAGGAGTTTGGACT 590
Query 590 GAAATCAATGTGGAGGAGTCCTAATGGGACAATCAGAAACATTTTAGATGGTACTGTATT 649
|||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||
Sbjct 591 GAAATCAATGTGGAGGAGTCCTAATGGGACGATCAGAAACATTCTAGATGGAACCGTATT 650
Query 650 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGAAAAAGCCTAT 709
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 651 CCGTGAACCTATTATGTGCAGCAATATCCCCCGGCTTGTTCCTGGTTGGGAAAAGCCTAT 710
Query 710 ATGCATTGGTAGGCATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 769
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATGCATTGGTAGACATGCCTTTGGTGACCAGTATCGTGCCACTGATACAGTAATTAAAGG 770
Query 770 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAAAAGATGGAAACGCACCTGTGGAGCTAGA 829
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 771 GCCAGGAAAGTTGAAAATGGTTTTTGTCCCAGAAGATGGAAACGCACCTGTGGAGCTAGA 830
Query 830 TGTATATGATTTCAAAGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 889
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TGTATATGATTTCAAGGGCCCAGGTGTCGCACTTGCTATGTACAACGTAGATGAGTCAAT 890
Query 890 TCGAGCTTTTGCTGAGTCATCTATGGCGATTGCATTAACTAAGAAATGGCCACTATACTT 949
| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 891 TAGAGCTTTTGCTGAGTCATCTATGGCGATGGCATTAACTAAGAAATGGCCATTATACTT 950
Query 950 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTCAAGGACATATTTCAAGA 1009
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 GAGCACCAAGAACACAATTCTCAAGAAATATGATGGCAGATTTAAGGACATATTTCAAGA 1010
Query 1010 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTATGAGCACCG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1011 AGTTTATGAGGCGAATTGGAAGCAAAAGTTTGAAGAGCACTCAATCTGGTACGAGCACCG 1070
Query 1070 CTTGATCGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGGGGCTATGTCTGGGCATG 1129
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1071 GTTGATTGATGACATGGTGGCTTACGCAGTCAAAAGTGAAGGTGGCTATGTCTGGGCTTG 1130
Query 1130 CAAAAACTACGATGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1189
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CAAAAACTACGACGGTGATGTTCAAAGCGATCTTCTTGCCCAAGGGTTTGGCTCATTAGG 1190
Query 1190 CCTCATGACCTCTGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1249
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CCTCATGACCTCCGTTTTGCTGTCCGCTGATGGGAAAACACTCGAGTCGGAAGCGGCTCA 1250
Query 1250 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TGGAACAGTAACTCGGCATTTCCGACTGCACCAAAAGGGACAAGAAACCAGTACTAACAG 1310
Query 1310 CATTGCCTCCATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1369
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CATAGCCTCAATATTTGCATGGACACGCGGCTTAGAACACAGGGCGAAACTGGATAAGAA 1370
Query 1370 CGAAAAATTAATGGATTTCGTGAAGAAGCTAGAGTCGTCATGTGTAAACACTGTTGAGAC 1429
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1371 CGAGAAATTAATGGATTTCGTGAAGAAGCTCGAGTCGTCATGTGTAAACACTGTTGAGAC 1430
Query 1430 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGCCCCAAGGTGAGTAGGGATTT 1489
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1431 AGGGAAAATGACCAAGGATCTTGCCCTTTTAATCCATGGTCCCAAGGTGAGTAGGGATTT 1490
Query 1490 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCGAAGCTCAAAACACAGCTCAA 1549
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1491 GTTTTTGAACACGGAAGAGTTCATTGATGCAGTAGCCTCCAAGCTCAAAACACAGTTCAA 1550
Query 1550 AGAGCTTCCTCTTGTCTGAGTCTGACCATTCCTGGGAAGTGGGAACAATACAAAAATAAT 1609
||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||
Sbjct 1551 AGAGCTTCCTCTTGTCTGA--C---C-ATTCCTGGGAATTGGGAACAATACAAAAATAAT 1604
Query 1610 GCTCGCAACAATT 1622
|||||||| ||||
Sbjct 1605 GCTCGCAATAATT 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86344937400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5