BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488304
Length=2181
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14620.1 | Symbols: DRM2, DMT7 | domains rearranged methyltr... 2907 0.0
AT1G27671.1 | Symbols: | pseudogene of DRM2/DMT7 (domain rearr... 510 2e-143
> AT5G14620.1 | Symbols: DRM2, DMT7 | domains rearranged methyltransferase
2 | chr5:4715253-4718704 REVERSE LENGTH=2183
Length=2183
Score = 2907 bits (1574), Expect = 0.0
Identities = 2002/2203 (91%), Gaps = 51/2203 (2%)
Strand=Plus/Plus
Query 1 TCCAGTAAACGGACGACGGGACAGAGCTCTCTCACCGACGGCGACATTATCTTTGCCGGC 60
|||||||||| ||||||| ||| |||||||||||| ||||||||| |||||||||||||
Sbjct 10 TCCAGTAAACTGACGACGATACA-AGCTCTCTCACCAACGGCGACAGTATCTTTGCCGGC 68
Query 61 GGCGAGAGCGTTTCTGCATAATCTGTA-CTAAATACTTCTAAATTTCGATTACTTATGGC 119
|||| ||||| |||||| ||||||||| || || | ||||| ||| | | |||
Sbjct 69 GGCGGGAGCGCTTCTGCTTAATCTGTAGCTCAA-A---CTAAA----AATT-C-TCTGG- 117
Query 120 GCAAGATT-CTGC-TGGTGATGACGATTTTGTTGATTGGAATACCGATGATGATTTGGAG 177
| ||| || | ||||||| || | || | | || |||||| |||||||
Sbjct 118 G---TATTACT-CATGGTGATTTGGA--ATAACGA-T-G-AT---GATGATTTTTTGGAG 165
Query 178 ATCGATAACTTTCAGTCATCTCCACCGTCATCTCCAATACA-G---T-C----CAGGGTC 228
|| ||||||||||| || ||||||| ||||||||||||||| | | | ||||||
Sbjct 166 ATTGATAACTTTCAATCTTCTCCACGGTCATCTCCAATACATGCAATGCAGTGTAGGGTC 225
Query 229 GAAACTTTAGTTGGTGTAGCCGTGACAACTAGTTCTTTGAACTCTCCTACTGAGACAACT 288
|||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 226 GAAAATCTAGCTGGTGTAGCCGTGACAACTAGTTCTTTGAGCTCTCCTACTGAGACAACT 285
Query 289 GATTTAGTTCAGATGGGCTTCTCAGACGAGATTTTTGCTACATTGTTTGACATGGGTTTT 348
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 286 GATTTAGTTCAGATGGGCTTCTCAGACGAGGTTTTTGCTACATTGTTTGACATGGGATTT 345
Query 349 CCTGTTGAGATGATTACTAGAGCAATCAAGGAAACTGGTCCAAATGCAGAAACTTCGGTT 408
||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 346 CCTGTTGAGATGATTTCTAGAGCGATCAAGGAAACTGGACCAAATGTAGAAACTTCGGTT 405
Query 409 ATAATTGATACTATCTCCAAATACTCAAGCAACTGTGAAGCTGGTTCTTCCAAGTCCAAG 468
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 406 ATAATTGATACTATCTCCAAATACTCAAGCGACTGTGAAGCTGGTTCTTCCAAGTCCAAG 465
Query 469 GCTATTGATCATTTCCTTGCGATGGGATTTGATGAGGAAAAAGTTATCAAAGCCATTCAA 528
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||
Sbjct 466 GCTATTGATCATTTCCTTGCTATGGGATTTGATGAAGAAAAAGTTGTCAAAGCCATTCAA 525
Query 529 GAACATGGAGAAGAAAATATGGAAGCAATTGCAAATGCACTCCTCTCTTGTGCAGAGGCT 588
|||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 526 GAACATGGAGAAGACAATATGGAAGCAATTGCAAATGCATTGCTCTCTTGTCCAGAGGCT 585
Query 589 GAGAAACTG-C--CAGTAGTAGAGGAAGAAGATGTCATTGACTGG---TCAAGCGATGAC 642
|||||||| | ||| ||||||||||||||||| |||||||||| ||||| |||||
Sbjct 586 AAGAAACTGCCAGCAGCAGTAGAGGAAGAAGATGGCATTGACTGGTCATCAAGTGATGAT 645
Query 643 GAGACCAATTACTCCGATATATTAGTCTCAGATGATGAGAAGGATCCAAACTCTAAA-GA 701
|| ||||||||| ||||||| ||| ||||||||||||||| ||||||||||| ||| ||
Sbjct 646 GATACCAATTACACCGATATGTTAAACTCAGATGATGAGAAAGATCCAAACTC-AAATGA 704
Query 702 AAACAGTAACCAAATACGGTCTTTGGTG-AGAATGGTTTTCTCGGAGCTGGAAGCTTCTC 760
||| | | | ||||||||||||||||| || |||| |||||| ||||| |||||||||
Sbjct 705 AAATGGCAGCAAAATACGGTCTTTGGTGAAG-ATGGGTTTCTCAGAGCTTGAAGCTTCTT 763
Query 761 TAGCTGTGGAGAGATGCGGAGAAAATGTGGACATTGCAGAGCTCACGGACTTCCTTTGTG 820
||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 764 TAGCTGTCGAGAGATGTGGAGAAAATGTGGATATTGCAGAGCTCACAGACTTCCTTTGTG 823
Query 821 CTGCT-AAGATGGCTAGAGAATTTAGTGAGTTTCACACTGACCCTGAAGAACGAAAGCCT 879
||||| || |||||||| ||||||||||||||| ||||||| | |||||||| |||||||
Sbjct 824 CTGCTCAA-ATGGCTAGGGAATTTAGTGAGTTTTACACTGAACATGAAGAACAAAAGCCT 882
Query 880 AGAAATGACATTAAGAAAAGGCGGTTAGAGTCaaaaaaaGAGCCAAGGTCATCTGTTGAT 939
||| || | ||||||||||||||||| ||||||||| ||||||||| ||||||||||||
Sbjct 883 AGACATAATATTAAGAAAAGGCGGTTTGAGTCAAAAGGAGAGCCAAGATCATCTGTTGAT 942
Query 940 GACGAGCCGGTTCGCCTACCAAATCCAATGATAGGATTTGGGGTTCCAAACGAGCCAGGA 999
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 943 GACGAGCCGATTCGTCTACCAAATCCAATGATAGGATTTGGGGTTCCAAACGAGCCCGGA 1002
Query 1000 CTCATCACACATCGATCGCTTCCGGAGTTAGCCCGAGGGCCACCTTTTTTCTACTACGAG 1059
||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1003 CTCATTACACATAGATCGCTTCCAGAGTTAGCCCGAGGGCCACCTTTTTTCTACTATGAG 1062
Query 1060 AATGTCGCCCTTACACCTAAAGGCGTTTGGGAGACTATCTCAAGACACCTATTCGATATC 1119
||||||||||| |||||||||||||||||||||||||| || || ||| | ||||| |||
Sbjct 1063 AATGTCGCCCTCACACCTAAAGGCGTTTGGGAGACTATTTCCAGGCACTTGTTCGAGATC 1122
Query 1120 CCACCTGAGTTTGTGGATTCAAAATATTTCTGTGCTGCAGCGAGGAAGAGAGGCTACATC 1179
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1123 CCACCTGAGTTTGTGGACTCAAAATATTTCTGTGTTGCAGCGAGGAAGAGAGGCTACATC 1182
Query 1180 CACAATCTCCCCATCAACAACAGATTCCAGATTCAGCCTCCACCAAAATACACCATTCAT 1239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1183 CACAATCTCCCCATCAACAACAGATTTCAGATTCAGCCTCCACCAAAATACACCATCCAT 1242
Query 1240 GATGCATTTCCTTTGAGTAAGAGATGGTGGCCAGACTGGGATAAAAGAACCAAACTTAAT 1299
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 1243 GATGCATTTCCTTTGAGTAAGAGATGGTGGCCAGAATGGGATAAAAGGACCAAGCTTAAT 1302
Query 1300 TGCATTTTGACTTGTACAGGCAGTGCCCAGTTAACTAACAGGATCCGTTTAGCCCTTGAG 1359
|||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||
Sbjct 1303 TGCATTTTGACTTGTACAGGTAGTGCTCAGTTGACTAACAGGATTCGTGTAGCCCTTGAG 1362
Query 1360 CCTTACAATGGAGAACCAGAGCCGCCTAAGCATGTACAGAGATATGTGATTGACCAGTGC 1419
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1363 CCTTACAATGAAGAACCAGAACCGCCTAAGCATGTACAAAGATATGTGATTGACCAGTGC 1422
Query 1420 AGAAGATGGAATCTGGTTTGGGTGGGGAAAAACAAAGCTGCCCCACTCGAGCCAGATGAG 1479
| || ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1423 AAAAAATGGAATTTGGTTTGGGTGGGTAAAAACAAAGCTGCCCCACTCGAGCCAGATGAG 1482
Query 1480 ATGGAGAATATTCTGGGATTTCCAAAGAATCATACTCGTGGTGGAGGAATGAGTAGAACT 1539
||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1483 ATGGAGAGTATTCTGGGATTTCCAAAAAATCATACTCGTGGTGGAGGCATGAGTAGAACT 1542
Query 1540 GAGCGCTACAAGT-CTCTGGGAAATTCTTTTCAGGTTGATACTGTGGCGTATCATCTGTC 1598
||||||| ||||| || | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1543 GAGCGCTTCAAGTCCT-TAGGAAATTCGTTTCAGGTTGATACTGTGGCGTATCATCTGTC 1601
Query 1599 TGTCCTGAAACCCATCTTCCCACATGGAATCAATGTTCTCTCTCTTTTCACGGGTATTGG 1658
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TGTCCTGAAGCCCATTTTCCCACATGGAATCAATGTTCTCTCTCTTTTCACGGGTATTGG 1661
Query 1659 TGGTGGAGAAGTGGCGCTTCATCGTCTCCAAATCAGAATGAAGCTTGTTGTGTCTGTTGA 1718
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1662 TGGTGGGGAAGTGGCACTTCATCGTCTCCAAATCAAAATGAAGCTTGTTGTGTCTGTTGA 1721
Query 1719 GATCTCAAAAGTCAACAGAAATATTTTGAAGGACTTCTGGGAGCAAACTAACCAGACTGG 1778
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1722 GATTTCAAAAGTCAACAGAAATATTTTGAAGGACTTTTGGGAGCAAACTAACCAGACTGG 1781
Query 1779 AGTTTTGATCGAGTTTTCAGACATCCAACACTTGACTAATGATACAATCGAAGGGTTGAT 1838
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1782 AGAATTGATCGAGTTTTCAGACATCCAACACTTGACTAATGACACAATCGAAGGGTTGAT 1841
Query 1839 GGAGAAATATGGTGGATTTGATCTTGTAATCGGAGGAAGTCCTTGCAACAATCTTGCAGG 1898
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1842 GGAGAAATATGGTGGATTTGATCTTGTAATTGGAGGAAGTCCTTGTAACAATCTGGCAGG 1901
Query 1899 CGGTAATAGGGTAAGCCGAGTTGGTCTTGAAGGTGATCAATCTTCGTTGTTCTTTGAGTA 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 CGGTAATAGGGTAAGCCGAGTTGGTCTTGAAGGTGATCAATCTTCGTTGTTCTTTGAGTA 1961
Query 1959 TTGCCGTATTCTGGAGGTGGTGCGTGCAAGGATGAGAAGATCTTGATCATTCACTTTACC 2018
|||||||||||| |||||||| ||||| ||||||||| |||||||||||||||| |||||
Sbjct 1962 TTGCCGTATTCTAGAGGTGGTACGTGCGAGGATGAGAGGATCTTGATCATTCACATTACC 2021
Query 2019 TGAAGTAGATTGAAGTAGATATGACTTGTTGAAATCTTGTTGAACTTTATTTTTCTCGTA 2078
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 2022 TGAAGTAGATTGAAGTAGATATGACTCCATGAAATCTAGTTGAACTTTATTTTTCTA-TA 2080
Query 2079 TCTGTTATGTAATTTGGCCATGAAGGTACATCATTGAATAACATAAGTCAACCTAACTCT 2138
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2081 TCTGTTATGTAATATGGCCATGAAGGTACATTTTTGAATAATATAAGTCAACCTAACTCT 2140
Query 2139 CTTTTGGTTTTTGCGCCAATGTATCTGCAGCTGCATTTGCACT 2181
|||||| |||||||| |||| |||||||| |||||||||||||
Sbjct 2141 CTTTTGCTTTTTGCGACAATATATCTGCAACTGCATTTGCACT 2183
> AT1G27671.1 | Symbols: | pseudogene of DRM2/DMT7 (domain rearranged
methyltransferase protein) | chr1:9629026-9630729 FORWARD
LENGTH=672
Length=672
Score = 510 bits (276), Expect = 2e-143
Identities = 537/658 (82%), Gaps = 37/658 (6%)
Strand=Plus/Plus
Query 751 GAAGCTTCTCTAGCTGTGGAGAGATGCGGAGAAAATGTGGACATTGCAGAGCTCACGGAC 810
||| |||||||| ||||||||||||| ||||||||| | ||||||||||||||||| |||
Sbjct 13 GAATCTTCTCTAACTGTGGAGAGATGTGGAGAAAATATAGACATTGCAGAGCTCACAGAC 72
Query 811 TTCCTTTGTGCTGCTAAGATGGCTAGAGAATTTAGTGAGTTTCACACTGACCCTGAAGAA 870
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 73 TTCCTTTGTGCTGCTTCGATGGTTAGAGAATTTAGTGAGTTTCACACTGACCCTGAAGAT 132
Query 871 CGAAAGCCTAGAAATGACATTAAGAAAAGGCGGTTAGAGTCaaaaaaaGAGCCAAGGTCA 930
||||||| |||| ||||| ||||||||| | ||||| | ||| | ||||||| ||||
Sbjct 133 CGAAAGCTTAGATATGACGTTAAGAAAAAAAG-TTAGAATTGAAATATGAGCCAATGTCA 191
Query 931 -TCTGTTGATGACGAGCCGGTTCGCCTACCAAATCCAATGATAGGATTTGGGGTTCCAAA 989
| ||||||||||||||||||| ||||||||| | | | | | |||||||||| ||||
Sbjct 192 GT-TGTTGATGACGAGCCGGTTTGCCTACCAA-TG-A-TAA-A--ATTTGGGGTTTCAAA 244
Query 990 CGAGCCAGGACTCATCACACATCGATCGCTTCCGGAGTTAGCC-CGAGGGCCACCTTTTT 1048
||| || |||||||||||||| |||| ||||||||||||| | | | | | || |||||
Sbjct 245 AGAGACATGACTCATCACACATAGATCACTTCCGGAGTTAGTCACAAAG-CAACTTTTTT 303
Query 1049 TCTACTACGAGAATGTCGCCCTTACACCTAAAGGCGTTTGGGAGACTATCTCAAGACACC 1108
||||||| ||||||||| || ||||||||| ||||||| | ||||||||| || ||
Sbjct 304 TCTACTATGAGAATGTCTTTCTCACACCTAAAAGCGTTTGAAAAACTATCTCAGGATACT 363
Query 1109 TATTCGATATCCCACCTGAGTTTGTGGATTCAAAATATTTCTGTGCTGCAGCG-AG---- 1163
| || |||||||||||| ||||| | || || |||||||| ||| | |||| |
Sbjct 364 TGTTTGATATCCCACCTAAGTTTTTTGACTCGAAATATTTATGTATTTCAGCACAAATCA 423
Query 1164 G-A-A--GAGAGGCTA-CATCCACAATCTCCCCATCAACAACAGATTCCAGATTCAGCCT 1218
| | | |||||| || |||||||||||| || ||| | || ||| |||| | || | |
Sbjct 424 GCACAAAGAGAGG-TAACATCCACAATCTTCCAATCCATAATAGAATCCA--T-CAAC-T 478
Query 1219 -CCACCAAAATACACCATTCATGATGCATTTCC-TTTGAGTAAGAGATGGTGGCCA---G 1273
||||| |||||||| |||| |||||||||||| ||| | |||||||||||||||| |
Sbjct 479 GCCACCGAAATACACAATTCGTGATGCATTTCCATTT-ACTAAGAGATGGTGGCCAACAG 537
Query 1274 ACTGGGATAAAAGAA-CCAAA-CTTAATTGCATTTTGACTTGTACA-GGCAGTGCCCAGT 1330
||| |||||||| || || || || || |||||||||| ||||||| || |||||||| |
Sbjct 538 ACTAGGATAAAA-AAGCCCAAGCTAAACTGCATTTTGATTTGTACAAGG-AGTGCCCAAT 595
Query 1331 TAACTAACAGGATCCGTTTAGCCCTTGAGCCTTACAATGGAGAACCAGAGCCGCCTAA 1388
||||||||| |||||||||||||||||| |||||||||||||||| | | |||| |||
Sbjct 596 TAACTAACATGATCCGTTTAGCCCTTGAACCTTACAATGGAGAACTAAAACCGCATAA 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108182174475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5