BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488305
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14640.1 | Symbols: ATSK13, SK13 | shaggy-like kinase 13 | c... 2204 0.0
> AT5G14640.1 | Symbols: ATSK13, SK13 | shaggy-like kinase 13 |
chr5:4719077-4722279 REVERSE LENGTH=1719
Length=1719
Score = 2204 bits (1193), Expect = 0.0
Identities = 1374/1458 (94%), Gaps = 25/1458 (2%)
Strand=Plus/Plus
Query 13 CATCA-GAAGAAAAAGAGAGATTTGCCATTTTCGGCAAGGAAGAGTCTTTTATTCTAGGG 71
||||| |||| || |||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 65 CATCACGAAG-AAGAGAGAGATTTGCCATTTTCGGCAAGG-A-AGTGTTTTATTCTAGGG 121
Query 72 TTTCTCTAGTTGCTGCTGCGTAAACAAGATGGTGAACTGAAATTGCGGCGGAGACTTTTC 131
|||||||| | ||||||||| ||||||||||| | |||||||||||||| |||||||
Sbjct 122 CTTCTCTAG-T--TGCTGCGTAGACAAGATGGTGGAGTGAAATTGCGGCGGTGACTTTT- 177
Query 132 AGACAGATTGACGAATTGAATCAAAGTTCTTG---A-ATATGGCTTCTGTGGGAACATTA 187
||||||||| |||||||| |||| ||||| | |||||||||||||||||||||||
Sbjct 178 ---CAGATTGACAAATTGAATTAAAGATCTTGAATACATATGGCTTCTGTGGGAACATTA 234
Query 188 CCGGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCCATATGCGCTGAAAAACTACCT 247
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 235 CCAGCTTCTTCTATGGCTACAAAACAAAGCAATGCTTCTATATGCGCTGAAAAATTACCT 294
Query 248 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GAAGGGATTAATGAGATGAAGATAAAAGATGATAAGGAAATGGAAGCAGCTGTGGTTGAT 354
Query 308 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGGAATGGAACTGAAACAGGTCACATTATTGTTACAACTATTGGTGGTAAAAATGGTCAG 414
Query 368 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATT 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CCTAAACAGACCATAAGTTATATGGCAGAGCGCATCGTTGGACAAGGTTCTTTTGGAATC 474
Query 428 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTTTTTCAGGCCAAGTGTTTAGAAACGGGGGAAACTGTTGCAATCAAGAAAGTTTTGCAA 534
Query 488 GACAAAAGATACAAGAACCGTGAGCTGCAGACGATGAGGCTTCTTGATCACCCTAATGTT 547
||||| ||||||||||| || ||||||||||| ||| | |||||||||||||||||||||
Sbjct 535 GACAAGAGATACAAGAATCGGGAGCTGCAGACAATGCGTCTTCTTGATCACCCTAATGTT 594
Query 548 GTATCCCTCAAGCATTGTTTTTTCTCAACGACCGAAAAAGATGAGCTGTATCTCAATTTG 607
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 595 GTATCCCTCAAGCATTGTTTTTTCTCAACGACTGAAAAAGATGAGCTCTATCTCAATCTG 654
Query 608 GTCCTTGAATACGTTCCTGAGACTGTATATCGCGTCTCAAAGCACTACAGTCGGGCAAAC 667
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 655 GTCCTTGAATACGTTCCTGAGACTGTCTATCGCGTCTCAAAGCACTATAGTCGGGCAAAC 714
Query 668 CAGAGGATGCCCATGATATATGTTAAACTCTACACTTATCAGATTTGCAGAGCTTTGGCT 727
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 715 CAGAGGATGCCCATTATATATGTTAAACTCTATACTTATCAGATTTGCAGAGCTTTGGCT 774
Query 728 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TATATTCATGGTGGAGTAGGAGTCTGCCACAGAGACATAAAACCACAGAATCTTCTGGTT 834
Query 788 AATCCTCATACGCATCAAGTCAAGCTCTGCGATTTTGGTAGCGCAAAAGTTCTGGTCAAA 847
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 835 AATCCTCATACGCATCAGGTCAAACTATGCGATTTTGGTAGCGCAAAAGTTCTGGTTAAA 894
Query 848 GGCGAACCAAACATCTCTTACATCTGCTCCCGTTACTATCGAGCGCCTGAACTTATATTT 907
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 GGCGAGCCAAACATCTCATACATCTGCTCCCGTTACTATCGAGCACCTGAACTTATATTT 954
Query 908 GGAGCCACAGAGTATACGACAGCTATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 967
||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 955 GGAGCTACAGAATATACAACAACAATTGACATATGGTCTGCAGGCTGTGTTCTTGCTGAA 1014
Query 968 TTGCTCCTTGGTCAGCCTTTATTTCCAGGTGAGAGTGGAGTCGACCAGCTAGTCGAGATA 1027
||||| || || |||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1015 TTGCTTCTGGGACAGCCTCTATTTCCAGGTGAGAGTGGAGTTGACCAGCTAGTTGAGATA 1074
Query 1028 ATTAAGGTTCTTGGAACACCAACCCGGGAGGAAATCAAATGCATGAATCCAAATTACACT 1087
|| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1075 ATAAAGGTTCTTGGAACACCAACACGGGAGGAAATCAAATGCATGAATCCAAACTACACA 1134
Query 1088 GAATTCAAATTCCCTCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1147
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAATTCAAATTCCCGCAAATAAAGGCTCATCCTTGGCACAAAATATTCCATAAGCGTACA 1194
Query 1148 CCTCCAGAAGCTGTAGACCTCGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1207
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CCTCCAGAAGCTGTAGACCTTGTCTCAAGACTTCTCCAGTATTCTCCAAACCTCAGATCA 1254
Query 1208 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACCGCTATGGAGGCGATAGTTCACCCGTTCTTCGATGAGCTACGTGATCCCAATACACGT 1314
Query 1268 CTTCCTAATGGTCGC-CCATTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1326
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTTCCTAATGGTCGTGCC-TTGCCTCCTCTCTTCAACTTTAAACCTCAAGAGCTAAAAGG 1373
Query 1327 AGCAAGTTCAGAGTTGTTTTCCAAGCTTATACCTGACCACGCCAGAAAACAATGTTCCTT 1386
|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1374 AGCAAGTTTAGAGTTGTTGTCCAAGCTTATACCTGACCACGCCCGAAAACAATGTTCCTT 1433
Query 1387 CCTCGctctctaaatctctctctctctctctctctctctatatatatatatatatGTGTG 1446
||||||||||||||||||| || |||||||||| |||||||| | | | ||||||
Sbjct 1434 CCTCGCTCTCTAAATCTCT-TC-CTCTCTCTCT------ATATATATGTGTGTGTGTGTG 1485
Query 1447 TATGTACACATGCATATA 1464
||||||||||||||||||
Sbjct 1486 TATGTACACATGCATATA 1503
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1465 TAAGTAATGGAGATAGCTTCTCAGGATT 1492
||||||||||||||||||||||||||||
Sbjct 1520 TAAGTAATGGAGATAGCTTCTCAGGATT 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80320872000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5