BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488306
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14650.1 | Symbols: | Pectin lyase-like superfamily protein... 1738 0.0
> AT5G14650.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:4724450-4726513 FORWARD LENGTH=1552
Length=1552
Score = 1738 bits (941), Expect = 0.0
Identities = 1041/1088 (96%), Gaps = 11/1088 (1%)
Strand=Plus/Plus
Query 386 AATTCAAATCACTTAAAGGAATCACTATAAAAGGAAAAGGGATAATCGATGGACGAGGAT 445
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 463 AATTCAAAGCACTTCAAGGAATCACTATAAAAGGAAAAGGGATCATCGATGGACGAGGAT 522
Query 446 CAGTATGGTGG-A--ACA--A--CG--CGAAAATGCCAAGGACCAAACCAACAGCTTTGA 496
||||||||||| | ||| | | | |||||||||||||||||||||||||||||||
Sbjct 523 CAGTATGGTGGAACGACATGATGGGTACAAAAATGCCAAGGACCAAACCAACAGCTTTGA 582
Query 497 GGTTCTACGGGAGTAACGGTGTAACGGTCAGTGGAATAACCATACAGAACAGCCCTCAAA 556
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 583 GGTTCTACGGGAGTAACGGTGTTACGGTCAGTGGAATAACCATACAGAACAGCCCTCAAA 642
Query 557 CCCATCTCAAGTTTGATAACTGCAAAAGCATTCAAGTGTCTGATTTCACAACTTCATCCC 616
|||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 643 CCCACCTCAAGTTTGATAACTGCATAAGCATCCAAGTTTCTGATTTCACAACTTCATCCC 702
Query 617 CTGGAGATTCCCCAAACACAGATGGAATCCACCTGCAAAACTCTCAAGATGCCGTTATTT 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 703 CTGGAGATTCCCCAAACACAGATGGAATCCACCTGCAAAACTCTCAAGATGCCGTTATAT 762
Query 677 ACCGCAGCACACTGGCCTGTGGAGATGACTGTATATCAATTCAAACTGGATGCTCGAATA 736
| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 ATCGCAGCACGCTGGCTTGTGGAGATGACTGTATATCAATTCAAACGGGATGCTCGAATA 822
Query 737 TCAACATACACGATGTAGACTGTGGGCCTGGCCATGGAATTAGCATTGGAGGACTGGGAA 796
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 823 TCAACATACACGATGTAGACTGTGGCCCTGGCCATGGAATTAGCATTGGAGGACTGGGAA 882
Query 797 AGGACAATACAAAGGCGTGTGTTTCAAACATCACTGTCCGTGATGTCAAGATGCATGAAA 856
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 883 AGGACAATACAAAGGCGTGTGTTTCAAACATCACTGTCCGTGATGTCACGATGCATGAAA 942
Query 857 CTACGAATGGTGTTCGAATAAAGTCCTGGCAGGGAGGATCAGGGTCTGTAAAGCAAGTTA 916
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 943 CTACGAATGGTGTTCGAATAAAGTCCTGGCAGGGAGGATCAGGGTCTGTAAAACAAGTTA 1002
Query 917 TGTTTTCAAATATTCAAGTCAGCAACGTAGCCAATCCAATAATAATAGATCAATATTACT 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TGTTTTCAAATATTCAAGTCAGCAACGTAGCCAATCCAATAATAATAGATCAATATTACT 1062
Query 977 GCGATGGTGGCGGATGCCATAATGAAACTTCAGCAGTCGCTGTATCAAACATAAACTACA 1036
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 GCGATGGTGGCGGATGCCACAATGAAACTTCAGCAGTCGCTGTATCAAACATAAACTACA 1122
Query 1037 TAAACATAAAAGGTACCTACACCAAAGAACCTGTACGCTTTGCCTGCAGTGATAGCTTGC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 TAAACATAAAAGGTACCTACACCAAAGAACCTGTACGCTTTGCCTGCAGTGATAGCTTGC 1182
Query 1097 CATGCACAGGAATCTCACTTTCGACCATAGAGCTTAAGCCAGCCACAGGAAAAGCAAGTT 1156
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1183 CATGCACAGGAATCTCACTGTCGACCATCGAGCTTAAGCCAGCCACAGGAAAAGCAAGTT 1242
Query 1157 CACTAGATCCTTTCTGCTGGAAGGCACACGGTGAACTGAAGACAAAAACTCTTCCACCAA 1216
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1243 CACTTGATCCTTTCTGCTGGAAAGCACACGGTGAACTGAAGACAAAAACTCTTCCACCAA 1302
Query 1217 TACAATGTTTGAAAACAGAAAAGTCACCAGAAGCTGCAAGCCGGTCTAATAATGATGCTT 1276
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1303 TACAATGTTTGAAAACAGAAAAGTCACCGGAAGCTGCAAGTCGGTCTAATAATGATGCTT 1362
Query 1277 GCTGATATTAGAGTAAGAAATTATGTTA-AAATGTCAAGGTAGGCCACACAATATACGAA 1335
|||||||||||||||||||||||||| | |||||| ||| ||||||||||| ||||||||
Sbjct 1363 GCTGATATTAGAGTAAGAAATTATGT-AGAAATGTTAAGATAGGCCACACATTATACGAA 1421
Query 1336 TAAAGAAGGGTTTGAATCTCTTCCTTTGTCATATACTAGTTTTTATAAATCATTTGCAAA 1395
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1422 TAAAGAAGGGTTTGATTCCCTTCCTTTGTCTTATACTAGTTTTTATAAATCATTTGCAAA 1481
Query 1396 CAAAATGTAATATATCGCATGCAATGTATTGCATTCTGTTATAGACTATTGGGAGTTATT 1455
|| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1482 CACAATGTAATATATGGCATGCAATGTATTGCATTCTGTTATAGACAATTGGAAGTTATT 1541
Query 1456 GAATTAGT 1463
|| |||||
Sbjct 1542 GAGTTAGT 1549
Score = 580 bits (314), Expect = 9e-165
Identities = 360/383 (94%), Gaps = 0/383 (0%)
Strand=Plus/Plus
Query 1 TTTTCAATATTAAAGATGTATAGACTAACCTTGAAATGTCTTTCTCTGAACTTTCTTCTC 60
||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||
Sbjct 45 TTTACAATATTAAAGATGTGTAGACTAACATTGAAATGTCTTTCCCTGAACTTTCTCCTC 104
Query 61 TTAATCTCCTTACTCTCTTCGAGGTTCGGGACTTGTGACGCTAGGCACAGTGTATACTGG 120
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 105 TTAATCTCCTTATTCTCTTCGAGATTCGGGACTTGTGACGCTAGGTACAGTGTATACTGG 164
Query 121 AAAGGAAACCGCAGGTCTATCGCCCAAGGGGAAAGTTCAGGAACAATCAATGTGCTTGAC 180
||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct 165 AAAGGAAACCGAAGGTCTATCGCCGAAGGGGGAAGTTCCGGAACAATCAATGTGCTTGAC 224
Query 181 CATGGCGCAAAAGGTGATGGGAAAAGTGATGACACAAAGGCTTTTGAAGATGCTTGGAAG 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 225 CATGGCGCAAAAGGTGACGGGACAAGTGATGACACAAAGGCTTTTGAAGATGCTTGGCAG 284
Query 241 GTAGCTTGTAAGGTGGCAGCGTCAACATTATTAGTTCCATCTGGTTCTACGTTCCTTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTAGCTTGTAAGGTGGCAGCGTCAACATTATTAGTTCCATCTGGTTCTACGTTCCTTGTT 344
Query 301 GGTCCTATTTCTTTCCTGGGAAAAGAATGTAAAGAGAACATTGTGTTTCAGATAGATGGA 360
|| ||| |||| |||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct 345 GGACCTGTTTCCTTCCTGGGAAAAGAATGTAAAGAGAAAATCGTCTTTCAGTTAGAAGGA 404
Query 361 AAGATCATAGCTCCAACGAGTGC 383
|||||||||||||||||||||||
Sbjct 405 AAGATCATAGCTCCAACGAGTGC 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5