BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488311
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14690.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1184 0.0
> AT5G14690.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G01516.1);
Has 86 Blast hits to 86 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses
- 2; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4733762-4734547
REVERSE LENGTH=786
Length=786
Score = 1184 bits (641), Expect = 0.0
Identities = 730/770 (95%), Gaps = 18/770 (2%)
Strand=Plus/Plus
Query 1 TTTTGGTTGTAGTAGGCTTTTGTTTTGATGGAGGAAACCCCGCATCGAGTTTCACGTAGA 60
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 6 TTTTTGTTGTAGTAGGCTTTTGTTTTGATGGAGGAAAACCCGCATCGAGTTTCACGTAGA 65
Query 61 ACCCATGGCGGGACCCACTGTCAAAACGACACCGTCGACGAAGAGAGCCGTCGACGACGG 120
| |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||
Sbjct 66 AACCATGGCGGGACCCACTGTCAAAACGACGCCGTGGACGAAGAGAACCGTCGACGACGG 125
Query 121 CATTTCAACCACCACACTCACGGCAACGAACTCAAATGCTCCAGTAAGAGATGCCGATCG 180
|| | |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 126 CA--T-AACCACCACACTCACGGCGACGAAGTCAAATGCTCCAGTAAGAGATGCCGATCG 182
Query 181 TGGGCGGCTGCGGCGATTGCTGACTGTGTAGCGCTTTGTTGCTGTCCATGTGCGATCATA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TGGGCGGCTGCGGCGATTGCTGACTGTGTAGCGCTTTGTTGCTGTCCATGTGCGATCATC 242
Query 241 AACCTTCTTACTCTCACTTTCGTCAAGGTCCCGTGGATGATCGGACGGCGATGTCTCGGC 300
|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 AACCTTCTTACTCTTACTCTCGTCAAAGTCCCGTGGATGATCGGACGGCGATGTCTCGGC 302
Query 301 GGCGG---TCGGAATAAGAAAAAGCGGAG-GCTATTACACAAGAGGAAACGCCGCGGGAA 356
||||| |||||||||||| |||||||| | || |||||| ||||||||||||||||||
Sbjct 303 GGCGGCGGTCGGAATAAGAAGAAGCGGAGAG-TAATACACAGGAGGAAACGCCGCGGGAA 361
Query 357 TATCAACGGTGAAGATGAGTTTCATCATCATAATAACCATCACCGCCGGTTTGAGACAGC 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 362 TATCAACGGTGAAGATGAGTTTTATCATCATAATAACCATCACCGCCGGTTTGAGACAGC 421
Query 417 CGAGG-GGGACGAGAAATGCGGCTGCGGAGGTGTCGGAGGA---TGTTATGGCGGCGGAG 472
||||| ||| ||||||||||||||||| |||| ||||||| ||||||||||||||||
Sbjct 422 CGAGGAGGGT-GAGAAATGCGGCTGCGGCGGTGGCGGAGGAGGATGTTATGGCGGCGGAG 480
Query 473 ATTATGATGATCACCGGTTTGTGGTAGAGAGAGATGGGAGTTTAACGAaggaggaggagg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTATGATGATCACCGGTTTGTGGTAGAGAGAGATGGGAGTTTAACGAAGGAGGAGGAGG 540
Query 533 aggag-A-A-AACGACGTCGTGTAAAGGAGGAGATCATGATGAGTCGAGAATAAGTGCAA 589
||||| | | |||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 541 AGGAGGAGAGAACGACGTCGTGTAAAGGAGAAGATCATGATGAGTCGCGAATAAGTGCAA 600
Query 590 GAGTTGAAGCCGAGAGAGTGTGGTTAGAGTTGTATCAGATTGGTCATCTTGGATTTGGTA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGTTGAAGCCGAGAGAGTGTGGTTAGAGTTGTATCAGATTGGTCATCTTGGATTTGGTA 660
Query 650 GAGTCTCTTTCACTGGAATTCAATGATTGATCAATTTGTAGGATTTT--AGTTATATTCA 707
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GAGTCTCTTTCACTGGAATTCAATGATTGATCAATTTGTAGGATTTTTTAGTTATATTCG 720
Query 708 AATAAATATAAAATGTGAATGTTTTAGTCTATGTGTTCTATTCTATGATA 757
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATAAATATAAAATGTGAATGTTTTAGTCTATGTGTTCTATTCTATGATA 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5