BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488314
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14730.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1306 0.0
> AT5G14730.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G01513.1); Has 85 Blast hits to 83 proteins
in 14 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi
- 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:4756218-4757657 FORWARD LENGTH=1440
Length=1440
Score = 1306 bits (707), Expect = 0.0
Identities = 1090/1260 (87%), Gaps = 86/1260 (7%)
Strand=Plus/Plus
Query 23 AGCACATCATGAGTACAATGCAAGATTTATCTTCTACGGTGTCGTTTAGCCCCAGCTTCA 82
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 57 AGCACATCATGAGTACAATGCAAGATTTATCTTCTACTGTGTCGTTTAGCCCTAGCTTCA 116
Query 83 GTTTCTACGCCTCCGGTGACCTTGTTGAAGCCGCCGTTAGAGTTGTACGTGAGTCCGAGA 142
|||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||
Sbjct 117 GTTTCTACGCCTCCGGTGACCTAGTCGAAACCGCCGTTAGAGTTATACGTGAGTCCGAGA 176
Query 143 GTTATTCTTCCGTTAAAGTTGACGGAGAAAACGACAAAGAATTCGAGTTCGAAACATTAC 202
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 177 GTTATTATTCCGTTAAAGTTGACGGCGAAAACGACAAAGAATTCGAGTTCGAAACATTAC 236
Query 203 CGTTAGGTGACGAGAGCTTCTTCCATTTCCCGACGACT-ACGGCGACTTTTAAGCGCTCT 261
||||||||||||||||| |||| |||||| | |||| | ||| |||||||||||||||||
Sbjct 237 CGTTAGGTGACGAGAGCCTCTTTCATTTCTCAACGA-TGACGACGACTTTTAAGCGCTCT 295
Query 262 TCCGACGACGATGACGTGGCAGACGATCGAGTCACCTCGAAGAATCTTTTCTACGATGGC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 TCCGACGACGATGACGTGGCAGACGATCGAGTCACCTCGAAGAATCTTTTCTACGGTGGA 355
Query 322 TGGAGTCTTGATCCATCTCCATCTCCACCTTCTCCGTCACAATCACATTCATCGTCGGAT 381
|||||| ||||||| || | ||||| | |||| ||||| |||||| |||||||||||||
Sbjct 356 TGGAGTGTTGATCC-TC-C-ATCTCTAACTTCGCCGTCGGAATCACTTTCATCGTCGGAT 412
Query 382 TCTGACGATTCGGAGAACCTTTC-CC---CAAG--CT---GTTTCTGGAGTCCGATCAGA 432
|||||||||||||| ||| |||| || ||| || ||||||||||||||||||||
Sbjct 413 TCTGACGATTCGGAAAACATTTCTCCGAGCAAATTCTACTGTTTCTGGAGTCCGATCAGA 472
Query 433 TCTCCGGCGAGAGGGGATAGCTTGAAG-GTTAAGAGTAAATCTTCTAGCGAACCGAGACG 491
|| ||||| |||| |||||||||||| || ||| | | ||||| | | || ||
Sbjct 473 TCCCCGGCTAGAGACGATAGCTTGAAGAGTAAAG-G-A--TCTTC--G--A---GA--CG 519
Query 492 GTGTCGTATAAAGGATTTTCTGAGGAGAAGCCACAGCGACGGAGCCGTTTCGACCGCGAG 551
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 520 GTGTCGTATAAAGGAATTTCTGAGGAGAAGCCACAGCGACGGAGCCGTTTCGACCGTGAG 579
Query 552 CGCATCCAAACGGTGCAGTTTCAAGAATCTTCTGAGGAGAAGCCACAGCGACGGCGGCGG 611
|||| | |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 580 CGCAACTAAACGGTGCAGTTTCAAGGATCTTCTAAGGAGAAGCCACAGCGATGGCGGCGG 639
Query 612 CCAGGAATCTTCGGTTTCGACAAGTGGAAACGGCTCGCCGGTAGTGAAAGGGAGGAATAA 671
| ||| ||||||| ||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 640 CGAGGGATCTTCGATTTCGACGAGTGGAAACGGCTCTCTGGTAGTGAAAGGGAGGAATAA 699
Query 672 AACGGCGTCGTATAAGCCTGAAGTGGATAAGAGAAGAAAGTCTTACCTACCTTACAGGCA 731
||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 700 AACGGCGGCGTATAAGCCTGATGTGGATAAGAGAAGAAAGTCTTACTTACCTTACAGGCA 759
Query 732 AGATTTGATCGGCGTTTTCGCCGGGATAAGCAGATTCCGTCATTAACG---G----AT-A 783
||||||||||||||||||||||||||| | ||||||||| ||||||| | || |
Sbjct 760 AGATTTGATCGGCGTTTTCGCCGGGATGGGTAGATTCCGTAATTAACGAATGTTTGATTA 819
Query 784 TTT--TA-TT--ATT-TT-A--T-T-CA----CA-AAT-AGGTCCTTGTTATGCCTATCG 826
||| || || ||| || | | | || || || ||||||| ||| || | |
Sbjct 820 TTTCCTAATTTTATTATTTAAGTGTGCATATTCACAAAGAGGTCCTCGTT-TGATTTTTA 878
Query 827 ATTTTCTTTTTTGACCATGTAAAACTTTTTGGTGCTATTAAATTC--TT-T-T-----G- 876
||||||| |||||||||||||| ||||||||||| |||||||||| || | | |
Sbjct 879 ATTTTCTCTTTTGACCATGTAATACTTTTTGGTGATATTAAATTCACTTGTGTTTTTTGT 938
Query 877 -------ACTTTTCCACTGAA-TGT-GT--AA-G---A---CTTTC-AAGGAAATAGAGA 917
|||||||||||||| ||| || || | | ||||| ||| |||||||||
Sbjct 939 CTTTTTTACTTTTCCACTGAAATGTTGTGCAAAGTGTAAGACTTTCGAAG-AAATAGAGA 997
Query 918 AT-TTGTTCACGAAGGGGACCGTTTTTTCCAGTTGCATTCTTGAAGAAATCAATGATCTC 976
|| || || |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 998 ATATT-TTAACGAAGGGGATCGTTTTGTCCAGTTGCATTCTTGAAGAAATCAATGATCTC 1056
Query 977 GGTGATGCAAGAAGAGTAAGAACTCTCTGGTGATTCATTGTCACAAGCTCTTCAATTCTC 1036
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1057 GGTGATACAACAAGAGTAAGAACTCTCTGGTGATTCATTGTCACAAGCTCTTCAGTTCTC 1116
Query 1037 AGTCTAGATCAATTTCCAATGTGCTGATTAGGTATTTGGTTAGGGTTTAGTAGATTAAAC 1096
|||||| ||| ||||||||||||| ||||||| ||| ||||||||||||||| ||||||
Sbjct 1117 GGTCTAGGTCAGTTTCCAATGTGCTAATTAGGTCTTTAGTTAGGGTTTAGTAGTTTAAAC 1176
Query 1097 AGGAGATTCTAACATAGACCATAGCTTTGATGCCTGTTTATGTTGTTAACCAAGAATGAT 1156
||| ||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||
Sbjct 1177 AGGGGATTCTAACATAGACTATAGCTTTGATGCATGTATATCTTGTTAACCAAGAATGAT 1236
Query 1157 TGTGGCTATTTAACAGGGAAAGAATCAGTGTTAAGTCAGTTTGGTAACAGTTTTCTGATG 1216
|||||||||||||||| ||||| || ||||||| |||||||||||| ||||||||||||
Sbjct 1237 GGTGGCTATTTAACAGGAAAAGATTCGGTGTTAACTCAGTTTGGTAATAGTTTTCTGATG 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5