BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488319
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase... 1875 0.0
AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724... 778 0.0
> AT5G14740.1 | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase
2 | chr5:4757972-4762615 FORWARD LENGTH=1514
Length=1514
Score = 1875 bits (1015), Expect = 0.0
Identities = 1222/1315 (93%), Gaps = 41/1315 (3%)
Strand=Plus/Plus
Query 101 TAATCTGTACAAAGATGTTGTGCTCTCATATACAGTTCAATTTTTTGTAAACAAGCTCAA 160
|||||||||||||||||||||| ||||||| | | ||||| ||||||||| |||||| |
Sbjct 207 TAATCTGTACAAAGATGTTGTGTTCTCATAAAAAATTCAA--TTTTGTAAAGAAGCTCTA 264
Query 161 CATGTT-CTGTGCTCTGTAAACTTGGTCCCCTTTTGGGCTACATTTTCTCGAAATGGCTC 219
|||||| || |||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 265 CATGTTCCT-TGCTCTGTAAACATGGTCCCCTTTTGGACTACAGTTTCTCGAAATGGCTC 323
Query 220 ATCAGACTCAGAGACGACTCTCTC-ATCTGCTTCAGAAGCCACAAAACAGTATAAATATC 278
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 324 ATCAGACTCAGAGACGACTCTC-CAATCTGCTTCAAAAGCCACAAAACAGTATAAATATC 382
Query 279 CTTCTCTTCGTCCATTATCTCATCGCCTGTCTCTCCTCTTCCTCTTCTCGTTCCGTTTAT 338
||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 383 CTTCTCTTCGTCC---CTCTCATCGCCTGTCTCTCCTCTTCCTCTTCCCGTTCCATTTAT 439
Query 339 CCGCAAACGGAGCTTGTGTTCGTTGCACCTGCTTCAGTCATCACTTCAATTTTGGTA-TA 397
||||||||||||||||| |||| |||||||||||||| | |||||||| || | | |
Sbjct 440 CCGCAAACGGAGCTTGTTTTCGGTGCACCTGCTTCAG-C--CACTTCAAACTT-GAACT- 494
Query 398 GAAGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 457
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 G-AGAAGGATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCA 553
Query 458 TTGAGAAGGATGAGCTGAAGGATGTAGCTGCGGCCAAAGTGAAAAAGATCACCGCGGAGC 517
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 554 TTGAGAAGGATGATCTGAAGGATGTAGCTGCGGCCAAGGTGAAGAAGATCACGGCGGAGC 613
Query 518 TTCAGACAGTCTCGTCGTCCGACAACAAGTCTTTCGATCCCGTCGAACGAATTAAGGAAG 577
||||| ||| |||||| || |||| ||| ||||| |||||||||||||||||||||||||
Sbjct 614 TTCAGGCAGCCTCGTCATCGGACAGCAAATCTTTTGATCCCGTCGAACGAATTAAGGAAG 673
Query 578 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGCTCG 637
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 674 GCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTATGGTGAGCTCG 733
Query 638 CTAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGCCCAT 697
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 734 CCAAAGGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCACGAGTGTGCCCAT 793
Query 698 CACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 757
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CACACGTACTAGACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAATATGG 853
Query 758 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCTGTCT 817
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 854 TTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATACGCTGTCT 913
Query 818 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATCAAGG 973
Query 878 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGATTTCATAGAGGATTGGGTGA 937
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 974 GGCTTATGTCATTTCCTCTTGACGGAAACAACTCTACTGACTTCATAGAGGATTGGGTCA 1033
Query 938 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAGG 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 AAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGTGAAAGTTCAGCATTTGAAG 1093
Query 998 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTATTGACAT 1057
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1094 ACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTGTCACTAGCAAACCTATTGACAT 1153
Query 1058 ATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1117
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1154 ATCCATTTGTGAGAGAAGGAGTTGTGAAAGGAACACTTGCTTTGAAGGGAGGCTACTATG 1213
Query 1118 ATTTTGTTAATGGCTCCTTTGAGCTTTGGGAACTCCAGTTTGGAATTTCACCCGTTCATT 1177
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1214 ACTTTGTTAATGGCTCCTTTGAGCTTTGGGAGCTCCAGTTTGGAATTTCCCCCGTTCATT 1273
Query 1178 CTATATGAACTAACACATCACCATCACCGTCGCCACCACCACCACCGTGatcatcacaag 1237
|||||||||||||||||||||||||||| |||| |||||||||| | || || ||
Sbjct 1274 CTATATGAACTAACACATCACCATCACCATCGCTACCACCACCA---T---CA-CA-AA- 1324
Query 1238 catcatgcatcatcgtcgtcatcatcatgatcaccatcatcatatatatatatataATGT 1297
|||||| |||| ||||||||||||||||||| |||| ||||||||| | || ||
Sbjct 1325 CATCAT-CATC---GTCGTCATCATCATGATCAGCATCTTCATATATA-A-AT-----GT 1373
Query 1298 TTTACTCTTATTTAATTGCTGTTTGTAATGG-A--CATTTACTTGCGATGAGCTTCTTTT 1354
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct 1374 TTTACTCTTATTTAATTGCTACTTGTAATGGTATACATTTACTTGCGATGAGCTTCTTTT 1433
Query 1355 CCTTCATTATCCACTTATAAAATAAATAAA-AA-TCATCTTTATTTTCACAGATA 1407
||||||||||||| |||||||||||||||| || |||| |||| |||||||||||
Sbjct 1434 CCTTCATTATCCAGTTATAAAATAAATAAATAAATCATGTTTACTTTCACAGATA 1488
> AT3G01500.2 | Symbols: CA1 | carbonic anhydrase 1 | chr3:194724-198019
REVERSE LENGTH=1319
Length=1319
Score = 778 bits (421), Expect = 0.0
Identities = 651/761 (86%), Gaps = 19/761 (2%)
Strand=Plus/Plus
Query 401 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 459
|||| |||||||| |||| |||| || || || || |||||||||||||||||||||||
Sbjct 372 GAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 431
Query 460 GAGAAGGATGAGCTGAAGGA-TGTAGCTGCGGCCAAA-GTGAAAAAGATCACCGCGGAGC 517
|||||||| ||||| || || || || |||| |||| ||| | ||||||| |||| |
Sbjct 432 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGG-CAAAGGTGGAGCAGATCACAGCGGCTC 489
Query 518 TTCAGACA-GTCTCGTCGTCCGACAA-CAAGTCTTTCGATCCCGTCG-AACGAATTAAGG 574
|||||||| || | || |||||||| ||| ||||||| ||||||| ||| ||||||
Sbjct 490 TTCAGACAGGT-ACTTCATCCGACAAGAAAG-CTTTCGACCCCGTCGAAAC-CATTAAGC 546
Query 575 AAGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAGC 634
| |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 547 AGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAGC 606
Query 635 TCGCTAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTGC 693
|||| ||| |||||||| || ||||||||||||||||||||||| ||||| || |||||
Sbjct 607 TCGC-AAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCACGTGTGTGT 665
Query 694 CCATCACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAAT 753
|||||||| || || |||| || || ||||||||||||||||| ||||| || |||||
Sbjct 666 CCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAAC 725
Query 754 ATGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGCT 813
|||||||||||||| |||||||||||||| | || |||||||| ||||||||||| ||
Sbjct 726 ATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGCG 785
Query 814 GTCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCATC 873
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 786 GTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGATC 845
Query 874 AAGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGATTTCATAGAGGATTG 932
|| ||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||||| ||
Sbjct 846 AAAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACTG 904
Query 933 GGTGAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCAT 991
||| ||||||||||||||||| |||||||| ||| | ||||| | || | |||||| |
Sbjct 905 GGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCCT 963
Query 992 TTGAGGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTAT 1051
|||| || |||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 964 TTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAAACCTAT 1023
Query 1052 TGACATATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGCT 1111
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 1024 TGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGCT 1083
Query 1112 ACTATGATTTTGTTAATGGCTCCTTT-GAGCTTTGGGAACT 1151
||||||| || || || || | |||| |||||||||| |||
Sbjct 1084 ACTATGACTTCGTCAAGGG-TGCTTTTGAGCTTTGGGGACT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5