BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488320
Length=823
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14750.1 | Symbols: WER, ATMYB66, WER1, MYB66 | myb domain p... 1347 0.0
AT5G40330.1 | Symbols: MYB23, ATMYB23, ATMYBRTF | myb domain pr... 291 1e-77
AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protei... 65.8 6e-10
> AT5G14750.1 | Symbols: WER, ATMYB66, WER1, MYB66 | myb domain
protein 66 | chr5:4763452-4764738 REVERSE LENGTH=816
Length=816
Score = 1347 bits (729), Expect = 0.0
Identities = 796/826 (96%), Gaps = 13/826 (2%)
Strand=Plus/Plus
Query 1 ATGAGAAAGAAAGTAAGTAGTAGTGGTGACGAAGGAAACAATGAGTACAAGAAAGGTTTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAGAAAGTAAGTAGTAGTGGTGACGAAGGAAACAATGAGTACAAGAAAGGTTTG 60
Query 61 TGGACAGTAGAAGAAGACAAGATCCTCATGGATTATGTCAAAGCTCATGGCAAAGGCCAC 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TGGACAGTAGAAGAAGACAAAATCCTCATGGATTATGTCAAAGCTCATGGCAAAGGTCAC 120
Query 121 TGGAATCGTATTGCCAAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAATCGTATTGCCAAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGG 180
Query 181 TGGATGAATTATCTCAGCCCTAATGTGAAAAGAGGCAATTTCACCGAGCAAGAAGAGGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGATGAATTATCTCAGCCCTAATGTGAAAAGAGGCAATTTCACCGAGCAAGAAGAGGAT 240
Query 241 CTTATCATTAGACTCCACAAGTTGCTTGGTAATAGGTGGTCTTTAATTGCTAAAAGAGTG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTATCATTAGGCTCCACAAGTTGCTTGGTAATAGGTGGTCTTTAATTGCTAAAAGAGTG 300
Query 301 CCGGGTCGAACGGATAATCAAGTGAAGAACTATTGGAACACGCATCTTAGTAAGAAACTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCGGGTCGAACGGATAATCAAGTGAAGAACTATTGGAACACGCATCTTAGTAAGAAACTC 360
Query 361 GGGATCAAAGATCAGAAAACCAAACAGAGCAATGGTGATATTGTTTATCAAATCAATCTC 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAATCAAAGATCAGAAAACCAAACAGAGCAATGGTGATATTGTTTATCAAATCAATCTC 420
Query 421 CCGAATCCTACCGAACCATCAGAAGAAACGAAAATCTCGAATATTGGCGCTAACAATAAT 480
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 CCGAATCCTACCGAAACATCAGAAGAAACGAAAATCTCGAATATTGTCGATAACAATAAT 480
Query 481 ATTCTCGGGGATGAAATTCAAGAAGACCATCAAGGAAGTAACTACTTGAGTTCACTTTGG 540
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATCCTCGGAGATGAAATTCAAGAAGATCATCAAGGAAGTAACTACTTGAGTTCACTTTGG 540
Query 541 GTTCATGAGGATGAGTTTGAGCTTAGCACACTCACCAACATGATGGATTTTACT-GATGG 599
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 541 GTTCATGAGGATGAGTTTGAGCTTAGCACACTCACCAACATGATGGACTTTA-TAGATGG 599
Query 600 ACACtgtttttgatgtgttt-ctgcttttgttattttagtattcgtttatgcatgttttg 658
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
Sbjct 600 ACACTGTTTTTGATGTGTTTTCTGCTTTTGTTATTTTAGTATTCGTTTATG--T-TTT-G 655
Query 659 ttattttCAAAGCTGATCAAACACTAATACATCAACAGTCTTAGATTAAAAGTTGTTGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTATTTTCAAAGCTGATCAAACACTAATACATCAACAGTCTTAGATTAAAAGTTGTTGAT 715
Query 719 GTGGTAGTGTATGATTGGCTAAGTCTTTTAATTAGGTGTACTTTCTTGGGTTAACT-TAA 777
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 716 GTGGTAGTGTATGATTGGCTAAGTCTATTAATTAGGTGAACTTTCTTGGGTTAACTCTAA 775
Query 778 ATGTATATGCTTAGCAACTCTATCTCTATGCATCGATAAATGTTTT 823
|||||||||||| |||||||| |||||||||| ||||||||
Sbjct 776 -TGTATATGCTTAAAAACTCTAT----ATGCATCGATTAATGTTTT 816
> AT5G40330.1 | Symbols: MYB23, ATMYB23, ATMYBRTF | myb domain
protein 23 | chr5:16127725-16129655 FORWARD LENGTH=971
Length=971
Score = 291 bits (157), Expect = 1e-77
Identities = 272/327 (83%), Gaps = 9/327 (3%)
Strand=Plus/Plus
Query 37 AACAATGAGTACAAGAAAGGTTTATGGACAGTAGAAGAAGACAAGATCCTCATGGATTAT 96
||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 150 AAC-ATGAATACAAGAAAGGTTTATGGACAGTGGAAGAAGACAAGATCCTCATGGATTAT 208
Query 97 GTCA-AAGCTCATGGCAAAGGCCACTGGAATCGTATTGCCAA-AAAGACTGGTTTAAAGA 154
||| || |||||||| | ||||||||||| || || ||||| ||| ||||| | ||||
Sbjct 209 GTCCGAA-CTCATGGCCAGGGCCACTGGAACCGCATCGCCAAGAAA-ACTGGGCTCAAGA 266
Query 155 GATGTGG-AAAGAGTTGTAGATTGAGGTGGATGAATTATCTCA-GCCCTAATGTGAAAAG 212
||||||| ||| || ||||| ||||| |||||||| || || | |||||||||| || ||
Sbjct 267 GATGTGGGAAA-AGCTGTAGGTTGAGATGGATGAACTA-CTTAAGCCCTAATGTTAACAG 324
Query 213 AGGCAATTTCACCGAGCAAGAAGAGGATCTTATCATTAGACTCCACAAGTTGCTTGGTAA 272
||||||||| || || |||||||| ||||| ||||| |||||||||||| | || || ||
Sbjct 325 AGGCAATTTTACTGACCAAGAAGAAGATCTCATCATCAGACTCCACAAGCTCCTCGGCAA 384
Query 273 TAGGTGGTCTTTAATTGCTAAAAGAGTGCCGGGTCGAACGGATAATCAAGTGAAGAACTA 332
|| ||||| || || || |||||||| ||||| |||| || || ||||| ||||| ||
Sbjct 385 CAGATGGTCGTTGATAGCGAAAAGAGTTCCGGGAAGAACAGACAACCAAGTAAAGAATTA 444
Query 333 TTGGAACACGCATCTTAGTAAGAAACT 359
|||||||| ||||| || ||||||||
Sbjct 445 CTGGAACACACATCTCAGCAAGAAACT 471
> AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protein
34 | chr5:24494691-24496351 FORWARD LENGTH=1357
Length=1357
Score = 65.8 bits (35), Expect = 6e-10
Identities = 44/48 (92%), Gaps = 1/48 (2%)
Strand=Plus/Plus
Query 136 AAAAAGACTGGTTTAAAGAGATGTGGAAAGAGTTGTAGATTGAGGTGG 183
|||||| |||| || ||||||||||||||||||||||||||||| |||
Sbjct 463 AAAAAG-CTGGATTGAAGAGATGTGGAAAGAGTTGTAGATTGAGATGG 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40086849306
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5