BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488325
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:47769... 2337 0.0
> AT5G14780.1 | Symbols: FDH | formate dehydrogenase | chr5:4776943-4779494
FORWARD LENGTH=1559
Length=1559
Score = 2337 bits (1265), Expect = 0.0
Identities = 1449/1536 (94%), Gaps = 19/1536 (1%)
Strand=Plus/Plus
Query 1 ATTTCGTCCTATATAAATCCTCTCTTCTCCAATTAGTGAATTTCACACAAAA-ACAAATC 59
|||||||||||||||||||||||| |||||||||| || ||||||||||||| | |||||
Sbjct 1 ATTTCGTCCTATATAAATCCTCTCATCTCCAATTACTG-ATTTCACACAAAACAAAAATC 59
Query 60 GACC-AA-AGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCA 117
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GACCAAAGAGTAACCAAATTGATATTTATCTCTTCTCAACCATGGCGATGAGACAAGCCG 119
Query 118 CTAAGGCTGCGATCAGAGCATGTTCTTCCTCTTCTTCTACGGGTTACTTCGCTCGACGTC 177
||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CTAAGGCAACGATCAGGGCCTGTTCTTCCTCTTCTTCTTCGGGTTACTTCGCTCGACGTC 179
Query 178 AATTTAATGCATCTTCTGCTGATAGCAAAAAGATTGTTGGAGTTTTCTACAAGGCCAACG 237
| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AGTTTAATGCATCTTCTGGTGATAGCAAAAAGATTGTAGGAGTTTTCTACAAGGCCAACG 239
Query 238 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATACGCTACCAAGAACCCTAACTTCCTTGGCTGCGTCGAGAATGCCTTAGGAATCCGTG 299
Query 298 ACTGGCTTGAATCACAAGGACATCAGTACATCGTCACTGATGACAAAGAAGGCCCTGACT 357
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 300 ACTGGCTTGAATCCCAAGGACATCAGTACATCGTCACTGATGACAAGGAAGGCCCTGATT 359
Query 358 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCTTTCCACCCGG 417
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GCGAACTTGAGAAACATATCCCGGATCTTCACGTCCTAATCTCCACTCCCTTCCACCCGG 419
Query 418 CATATGTGACTGCTGAAAGAATCAAGAAAGCCAAGAACCTGAAGCTTCTCCTCACGGCTG 477
| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 420 CGTATGTAACTGCTGAAAGAATCAAGAAAGCCAAAAACTTGAAGCTTCTCCTCACAGCTG 479
Query 478 GTATTGGTTCAGATCACATTGATCTCCAGGCAGCTGCAGCTGCTGGCTTGACGGTTGCTG 537
||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTATTGGCTCGGATCATATTGATCTCCAGGCAGCTGCAGCTGCTGGCCTGACGGTTGCTG 539
Query 538 AAGTCACGGGAAGCAACGTGGTTTCAGTAGCGGAAGATGAGCTCATGAGAATCCTAATCC 597
|||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||
Sbjct 540 AAGTCACGGGAAGCAACGTGGTCTCAGTGGCAGAAGATGAGCTCATGAGAATCTTAATCC 599
Query 598 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTTGTCAAAGGCGAGTGGAACGTCGCGG 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 TCATGCGCAACTTCGTACCAGGGTACAACCAGGTCGTCAAAGGCGAGTGGAACGTCGCGG 659
Query 658 GCATTGCATACAGAGCTTATGATCTTGAAGGGAAGACGATCGGAACTGTGGGAGCTGGAA 717
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 660 GCATTGCGTACAGAGCTTATGATCTTGAAGGGAAGACGATAGGAACCGTGGGAGCTGGAA 719
Query 718 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGCAATTTATTGTACCATG 777
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 720 GAATCGGAAAGCTTTTGCTGCAGCGGTTGAAACCATTCGGGTGTAACTTGTTGTACCATG 779
Query 778 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGATTGGTGCTAAGTTTGTTGAGGATC 837
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 780 ACAGGCTTCAGATGGCACCAGAGCTGGAGAAAGAGACTGGAGCTAAGTTCGTTGAGGATC 839
Query 838 TGAATGAAATGCTCCCTAAATGTGACGTTGTAGTCATCAACATGCCTCTCACGGAGAAGA 897
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 TGAATGAAATGCTCCCTAAATGTGACGTTATAGTCATCAACATGCCTCTCACGGAGAAGA 899
Query 898 CAAGAGGAATGTTCAACAAAGAGTTGATAGGAAAATTGAAGAAAGGTGTTTTGATAGTGA 957
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 900 CAAGAGGAATGTTCAACAAAGAGTTGATAGGGAAATTGAAGAAAGGCGTTTTGATAGTGA 959
Query 958 ACAACGCAAGAGGTGCCATCATGGATAGGCAAGCGGTGGTGGAGGCGGTGGAGAGTGGAC 1017
||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 960 ACAACGCAAGAGGAGCCATCATGGAGAGGCAAGCAGTGGTGGATGCGGTGGAGAGTGGAC 1019
Query 1018 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACATTGGAGGGTACAGCGGAGACGTTTGGGACCCACAGCCAGCTCCTAAGGACCATCCAT 1079
Query 1078 GGCGTTACATGCCTAACCAAGCCATGACCCCGCATACCTCCGGCACCACCATTGACGCTC 1137
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 1080 GGCGTTACATGCCTAACCAGGCTATGACCCCTCATACCTCCGGCACCACCATTGACGCTC 1139
Query 1138 AGCTACGATATGCGGCGGGGACGAAAGACATGTTGGAGAGGTACTTTAAGGGAGAAGACT 1197
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1140 AGCTACGGTATGCGGCGGGGACGAAAGACATGTTGGAGAGATACTTCAAGGGAGAAGACT 1199
Query 1198 TCCCTGCTCAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1257
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCCCTACTGAGAATTACATCGTCAAGGACGGTGAACTTGCTCCTCAGTACCGGTAAGCTT 1259
Query 1258 TTGAGGAGGTGAGATTGGGAAGATGATGAGAAACGACCTCAACGTTCAAGAAAACAAATA 1317
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1260 TTGAGGAGGTGACATTGGGAAGATGATGAGAAACGACCCCAACGTTCAAGAAAACAAATA 1319
Query 1318 AAAAAGTATTTCGACTTTGCTAAGTCGAATAACTTG-GTCATCTTTTCGTTTAGTTTTTG 1376
|| |||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 1320 AAGAAGTATTTGGACTTTGCTAAGTCGAATGACTTGAGTCATCTTTTGGTTTAGTTTTTG 1379
Query 1377 TTATT-TCATAAGCAGAATAAATA-TAGGAGGGCACTTACTTCCCCTGTTCCGAGAGTTT 1434
||||| | ||||||| ||||| || ||||||||||||| | ||| ||||| ||||||||
Sbjct 1380 TTATTAT-ATAAGCACAATAA-TAATAGGAGGGCACTT-C--CCC-TGTTCTGAGAGTTT 1433
Query 1435 GTGAACGTATTCCTTTAGTAGTTTAAATCACATACAGTTTATGTATTTGTTTCCCCAATT 1494
|||||| |||| || ||| |||||||||||| || | |||||||||||||||||||
Sbjct 1434 GTGAACATATTACTC-AGTGGTTTAAATCACA--CA-T--ATGTATTTGTTTCCCCAATC 1487
Query 1495 GTAGGAACTCAATGGTTCCAAATCTCATTATATAAA 1530
||||||||||||||||| ||||||||||||||||||
Sbjct 1488 GTAGGAACTCAATGGTTTCAAATCTCATTATATAAA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5