BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488326
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14790.1 | Symbols: | ARM repeat superfamily protein | chr5... 2182 0.0
> AT5G14790.1 | Symbols: | ARM repeat superfamily protein | chr5:4782946-4785805
FORWARD LENGTH=1567
Length=1567
Score = 2182 bits (1181), Expect = 0.0
Identities = 1459/1585 (92%), Gaps = 51/1585 (3%)
Strand=Plus/Plus
Query 1 TCGCATCGCCGGTTTTTATAATTT-TCGTCTTCTACAAAATAAAATtctctctctctctT 59
|||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||
Sbjct 1 TCGCATCGCCTGTTTTTATAATTTCTCGTCTTGTACAAAATAAAAGACTCTCTCTCTCTT 60
Query 60 AAAATTTCTCCTTCGTTTCTCTCGCATTTCAAAATTTCATTTCCTTATATAGATTTTTAA 119
|||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 AAAATTTCTCTTTCGATTCTCTCGCATTTCAAAATTTCATTTCCTTATATAGACTCTTAA 120
Query 120 GGTCGGCGA-TTCTTGCGAGTCCACAGATTTTCCCTACTCCGCCGTCAGTTTTTCTCAAC 178
|| |||||| ||| || ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 121 GGCCGGCGATTTC-TGTGAGTCCATAGATTTTCGCTACTCCGCCGTCAGTTTTTCTCAAC 179
Query 179 T-CAGAGGCTGCGTTTTCGCCACCGCTTTGATTCGCCGGTAACTTCACGTATGGCCAGTA 237
| | ||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 TCCGGAGGCTGTGTTTTTGCCACCGCTTTGATTCGCCGGTAAGTTCACGTATGGCCAGTA 239
Query 238 ATACTTTGAAAGATATGAATAGTCTTCATGTAACTGAGAAGATAAGTGACTGTAAAGCTA 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATACTTTGAAAGAGATGAATAGTCTTCATGTAACTGAGAAGATAAGTGACTGTAAAGCTA 299
Query 298 GCTTAACCAAGCCTTGTGTTGGCAAAATGAATGGAAAATCTGAAGATAGACCATTACCAA 357
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTTGACCAAGCCATGTGTTGGTAAAATGAATGGAAAATCTGAAGATAGACCATTACCAA 359
Query 358 ACTCTGCCTCCTTGGATTCCAGTGATCCTAAAGTTGCAGAAGCAGAGAAACCCGAGCCAG 417
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 360 ACTCTGCCTCCTTGGATTCCAGTGATTCTAAAGTTGTAGAAGCAGAGAAACCCGAGCCAG 419
Query 418 AGAAAGCTATTGTGGAAGTTGAATATATTGATTCCGAAAACTTGGATAATGTAGACGATG 477
||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 420 AGATAGCTATTGTGGAAGTTGAATATATTGAATCTGAAAACTTGGATAATGTAGACGATG 479
Query 478 CTGATACAGTTCTGAAGTCGGTTTTAGCTGGACTCGAGTCCAAGGATTGGATTTCAGTCT 537
||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||
Sbjct 480 CTGATGCAGTTCTGAAGTCTGTTTTAGCTGGACTAGAGTCCAAGGACTGGATTTCACTCT 539
Query 538 GTGATGCTCTTAATAACGTTCGCCGGCTTTCGATATTCCACAAGGAAGCAATGTTGCATA 597
||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 540 GTGATGCTCTTAATAACGTTCGCCGACTTTCGATATTCCACAAGGAAGAAATGATGCATA 599
Query 598 TGCTTGAAAAAGTGATACCACTTGTTGTGAAGTCCCTGAAAAATCCAAGAAGTGCGGTGT 657
||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 600 TGCTTGAAAAAGTGATACCACTTGTCGTGAAATCACTGAAAAATCCAAGAAGTGCGGTGT 659
Query 658 GTAAAACGGCATGCATGACATCTGCAGATATCTTCAGTGCATATAATAATCATATTACAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 660 GTAAAACGGCATGCATGACATCTGCAGATATCTTCAGTGCATATAATAATCATATAACAG 719
Query 718 ATCTGTTGGAGCCTTTGCTTACTCAACTCCTCCTCAAGTCTTCCCAAGACAAACGGTTTG 777
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 ATCTGTTGGAGCCTCTGCTTACTCAACTACTCCTCAAGTCTTCCCAAGACAAACGGTTTG 779
Query 778 TTTGCGAGGCAGCAGAGAAAGCTTTAACAGCAATGACCAAATATGTTTCTCCAACCTTGC 837
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 780 TTTGCGAGGCAGCAGAGAAAGCTTTAACAGCAATGACCAAATATGTTTCCCCAACCTTGC 839
Query 838 TGTTACCAAAGCTGCAACCTTGTCTCAAGAACAGGAATCCTCGGATCCGTGCTAAAGCAT 897
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 840 TGTTACCAAAGCTGCAACCTTGTCTCAAAAACAGGAATCCTCGGATCCGTGCCAAAGCAT 899
Query 898 CATTATGCTTTTCTCGAAGTGTTCCTCGACTGGGCGTTGAAGGGATCAAAGAATATGGAA 957
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 900 CATTATGCTTTTCTCGAAGTGTTCCTCGACTGGGCGTTGAAGGGATTAAAGAATATGGAA 959
Query 958 TCGACAAACTAGTTCAAGCAGCCGCGTCTCAGCTTAGCGATCAGCTCCCTGAATCCCGTG 1017
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 TCGACAAATTAGTTCAAGCAGCCGCATCTCAGCTTAGCGATCAGCTCCCTGAATCCCGTG 1019
Query 1018 AGGCTGCACGGACCGTCCTGCTAGAACTTCAGACCGTATATGAAAAAGCTCATCCTCTCA 1077
||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 AGGCTGCACGGACTGTCCTACTAGAACTTCAGAGCGTATATGAAAAAGCTCATCCTCTCA 1079
Query 1078 TCAACCCTGAAACATCATCCTCATCATCACCAGAAGAAGAGCAAATTGCGGAGGCAGAGC 1137
|||||||||| |||||||| | | || |||||| ||||||| |||||| |||||
Sbjct 1080 TCAACCCTGAGACATCATC---A-C--CA---GAAGAACAGCAAATCCCGGAGGTAGAGC 1130
Query 1138 CAGTTACTTGGGAAATCTT-CTGCCAA-TCAAAACTGTCGGCTCTTAGCGCACAAGCTGT 1195
|| |||||||||||| ||| |||| || ||||||||||||||||||||||||||||| ||
Sbjct 1131 CAATTACTTGGGAAA-CTTTCTGC-AAGTCAAAACTGTCGGCTCTTAGCGCACAAGCCGT 1188
Query 1196 GCTTCGTGTCACCAATGTTGTGACTGTCAATGCTCGGGAGGGTTTGGTTACCACAGGTTC 1255
||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||||||||
Sbjct 1189 GCTTCGTGTCACCAATGTTGTCACTGTTACTGCTCGGGAGGGTTTGGTTACTACAGGTTC 1248
Query 1256 ATCATCTTCATCTCAGTTATAAACCTTTTCTACTACAAtttttttttAAAACCGTTTGCT 1315
|||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||
Sbjct 1249 ATCATCTTCATCCCAGTTATAAACATTTTCTACTACAAATTTTTTA-AAAACCGTTTGCT 1307
Query 1316 ACGAGTCATACGGTTTTACATGGTATTCTCCGGCATG-----AT---CGACCATATTGGC 1367
|||||||||||||||| |||||||||||||||||||| || | |||| ||||||
Sbjct 1308 ACGAGTCATACGGTTT-ACATGGTATTCTCCGGCATGGCGGCATGATCTACCAAATTGGC 1366
Query 1368 AAATTATGGACCGATAAAAAGAGTGAATGC-CGTCTTATTAAAACTCTTGCCTTCTTTCT 1426
||||||||||||||||||||||||||| | ||| | || |||| ||||| |||||||||
Sbjct 1367 AAATTATGGACCGATAAAAAGAGTGAACGTTCGTGT-ATGAAAAATCTTGGCTTCTTTCT 1425
Query 1427 GGGTTATATTTTCTTTTTGTGGGTTCTCTTCAGTCTTCACT-----T--T-----CTT-- 1472
||||||| ||| |||||||||| ||||| || ||||||||| | | |||
Sbjct 1426 GGGTTAT-TTT-CTTTTTGTGGATTCTCATCTGTCTTCACTACCAGTACTTGTTTCTTTT 1483
Query 1473 ----ATGTGTATATATTCTATACCAAGATTTGGTAAGATAGTC-TCGAGTCTTTTGGTTT 1527
||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1484 TCTTATGTGTATATATTCTATACCAAGATTTGGTAAGATAGTCAT-GAGTCTTTTGGTTA 1542
Query 1528 TATGCAAAATTGGTCGGATTCTTTG 1552
|||||||||||||||||||||||||
Sbjct 1543 TATGCAAAATTGGTCGGATTCTTTG 1567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76606031670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5