BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488330
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14870.1 | Symbols: CNGC18, ATCNGC18 | cyclic nucleotide-gat... 3439 0.0
> AT5G14870.1 | Symbols: CNGC18, ATCNGC18 | cyclic nucleotide-gated
channel 18 | chr5:4808091-4810897 REVERSE LENGTH=2298
Length=2298
Score = 3439 bits (1862), Expect = 0.0
Identities = 2187/2336 (94%), Gaps = 53/2336 (2%)
Strand=Plus/Plus
Query 1 ATGAATAAAATCCGGTCTCTCCGCTGCCTCCTCCCGGAGACCATAA------CCT---CC 51
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1 ATGAATAAAATCCGGTCTCTCCGCTGCCTCCTCCCGGAGACCATAACCTCCGCCTCCACC 60
Query 52 GCCGCCTCTAATCGAGGATCTGACGGTAGCCAAGTCAGCGTCCTCCTATGGCGGCATCAG 111
|||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 61 GCCGCCTCAAATCGAGGATCTGACGGTAGCCAATTCAGCG---TCCTATGGCGGCATCAG 117
Query 112 ATCCTCGACCCGGACAGCAACATCGTCACCTATTGGAACCACGTCTTTCTCATTACCTCA 171
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATCCTGGACCCGGACAGCAACATCGTCACCTATTGGAACCACGTCTTTCTCATTACCTCA 177
Query 172 ATCCTCGCTCTCTTTCTCGATCCTCTCTACTTCTACGTCCCTTACGTCGGAGGTCCGGCG 231
|||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 178 ATCCTCGCTCTCTTCCTCGATCCTTTCTATTTCTACGTCCCTTACGTCGGTGGTCCGGCG 237
Query 232 TGTCTCTCCATCGACATCAGCCTCGCCGCTACAGTAACTTTCTTCCGTACAGTCGCCGAT 291
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 238 TGTCTCTCCATCGACATCAGCCTCGCCGCTACTGTCACTTTCTTCCGTACAGTCGCCGAT 297
Query 292 ATCTTCCACCTCTTGCACATCCTCATGAAATTCAGAACCGCCTTCGTCGCGAGAAGCTCT 351
|||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||
Sbjct 298 ATCTTCCACCTCTTGCACATTTTCATGAAATTCAGAACTGCGTTCGTCGCGAGGAGTTCT 357
Query 352 CGAGTTTTTGGTCGCGGTGAGCTTGTTATGGATTCTAGAGAGATTGCTATGAGATACTTG 411
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGTGTTTTTGGTCGCGGTGAGCTTGTTATGGATTCTAGAGAGATTGCTATGAGATACTTG 417
Query 412 AAGACAGATTTCCTCATTGATGTCGCCGCCATGCTTCCTCTTCCTCAGCTTGTTATTTGG 471
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 AAGACAGATTTCCTCATTGATGTCGCCGCCATGCTTCCCCTTCCTCAGCTTGTTATTTGG 477
Query 472 CTAGTAATTCCAGCCGCTACAAACGGGACTGCTAATCATGCCAATAGCACTCTCGCACTT 531
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 478 CTAGTAATTCCAGCGGCCACAAATGGAACTGCTAATCATGCCAATAGCACTCTCGCACTT 537
Query 532 ATCGTTCTTGTTCAATACATTCCAAGATCATTCATCATATTCCCTCTCAACCAAAGGATT 591
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 ATCGTTCTTGTTCAATACATTCCAAGATCATTCATCATATTCCCACTCAACCAAAGGATT 597
Query 592 ATCAAAACAACCGGGTTTATCGCCAAGACTGCTTGGGCTGGAGCTGCATACAACCTCCTC 651
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 ATCAAAACAACCGGGTTTATCGCCAAGACTGCTTGGGCAGGAGCTGCATACAACCTCCTA 657
Query 652 CTCTACATCCTTGCTAGTCACGTTTTAGGAGCAATGTGGTATTTGTCATCAATCGGGCGG 711
| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 658 TTGTACATCCTTGCTAGTCACGTGTTAGGAGCAATGTGGTATCTGTCATCAATCGGGCGG 717
Query 712 CAGTTTTCGTGCTGGTCTAATGTATGTAAGAAAGATAACGCCCTGAGAGTTTTGGATTGT 771
||||||||||||||||| || ||||| |||||||| ||||| |||||||||||||||||
Sbjct 718 CAGTTTTCGTGCTGGTCCAACGTATGCAAGAAAGACAACGCTTTGAGAGTTTTGGATTGT 777
Query 772 CTTCCTAGCTTCTTGGACTGCAAGAGTTT-GCAGCAACCTGAGCGCCAGTATTGGCAGAA 830
||||||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 778 CTTCCTAGCTTCTTGGATTGCAAGAGTTTAGAA-CAACCAGAGCGCCAGTATTGGCAGAA 836
Query 831 CGTTACTCAGGTCCTTTCTCATTGTGATGCTACAAGCAGCACTACCAATTTCAAGTTCGG 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 CGTTACTCAGGTCCTTTCTCATTGTGATGCTACAAGCAGCACTACCAATTTCAAATTCGG 896
Query 891 AATGTTTGCTGAAGCCTTTACCACTCAAGTTGCTACAACAGATTTTGTGTCCAAATACTT 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 AATGTTTGCTGAAGCCTTTACCACTCAAGTTGCTACAACAGATTTTGTGTCCAAGTACTT 956
Query 951 GTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGTTCTTATGGCCAGAATATAACCACAAG 1010
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 957 GTATTGTCTTTGGTGGGGTTTAAGAAATCTAAGTTCTTATGGACAGAATATAACCACAAG 1016
Query 1011 TGTGTACCTTGGCGAGACCTTGTTCTGTATAACAATTTGTATTTTTGGGTTGATTCTCTT 1070
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGTATACCTTGGCGAGACCTTGTTCTGTATAACAATTTGTATTTTTGGGTTGATTCTCTT 1076
Query 1071 TACACTCCTGATTGGTAACATGCAATCTTCTCTACAATCGATGTCAGTAAGAGTTGAGGA 1130
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 CACACTCCTGATTGGTAACATGCAATCTTCTCTGCAATCGATGTCAGTAAGAGTTGAGGA 1136
Query 1131 ATGGAGAGTTAAGCGAAGAGATACTGAAGAATGGATGAGACATCGTCAACTACCTCCAGA 1190
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATGGAGAGTTAAGAGAAGAGACACTGAAGAATGGATGAGACATCGTCAACTACCTCCAGA 1196
Query 1191 GCTTCAAGAACGTGTCCGAAGATTCGTTCAATATAAATGGCTTGCAAC-ACGAGGTGTCG 1249
|||||||||||||||||||||||| || ||||| |||||||||||||| | |||||||||
Sbjct 1197 GCTTCAAGAACGTGTCCGAAGATTTGTCCAATACAAATGGCTTGCAACCA-GAGGTGTCG 1255
Query 1250 ATGAAGAATCAATCCTCCATTCATTACCTACAGATTTACGCCGCGAAATCCAACGTCATC 1309
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1256 ATGAAGAATCAATCCTCCATTCATTACCTACAGATTTACGCCGTGAAATCCAACGTCATC 1315
Query 1310 TTTGTCTCGCCCTTGTCCGCCGGGTCCCATTCTTCTCTCAAATGGATGATCAACTTCTTG 1369
|||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TTTGTCTCTCCCTTGTTCGCCGGGTCCCGTTCTTCTCTCAAATGGATGATCAACTTCTTG 1375
Query 1370 ATGCTATATGTGGATGCCTTGTCTCATCTTTAAGCACAGCTGGGACCTACATATTTCGTG 1429
|||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||||
Sbjct 1376 ATGCTATATGCGGATGCCTTGTCTCATCTTTAAGCACGGCCGGGACATACATATTCCGTG 1435
Query 1430 AAGGTGATCCGGTGAATGAGATGCTATTTGTGATCCGAGGACAAATAGAGAGCTCAACAA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AAGGTGATCCGGTGAATGAGATGCTATTTGTGATCCGAGGACAAATAGAGAGCTCAACAA 1495
Query 1490 CAAATGGAGGAAGATCTGGTTTCTTTAACTCCACTACTCTACGACCTGGCGATTTCTGTG 1549
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1496 CAAATGGAGGAAGATCTGGTTTCTTCAACTCCACTACTCTACGACCTGGCGATTTCTGTG 1555
Query 1550 GGGAAGAACTTCTTACATGGGCCTTAATGCCAAACTCTACCCTCAATCTTCCGTCTTCAA 1609
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1556 GGGAAGAACTTCTTACATGGGCCTTAATGCCAAACTCTACACTCAATCTTCCGTCTTCAA 1615
Query 1610 CCCGAAGCGTCCGTGCACTCTCTGAAGTCGAAGCCTTTGCCCTAAGCGCAGAGGATCTTA 1669
| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1616 CACGAAGCGTCCGTGCCCTCTCTGAAGTAGAAGCCTTTGCATTAAGCGCAGAGGATCTTA 1675
Query 1670 AGTTCGTTGCTCATCAGTTCAAGCGTCTTCAAAGCAAAAAGCTACAACACGCTTTCAGGT 1729
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1676 AGTTTGTTGCTCATCAGTTCAAACGTCTTCAAAGCAAAAAGCTTCAACACGCTTTCAGGT 1735
Query 1730 ACTACTCACATCAGTGGCGAGCATGGGGGGCATGTTTTGTCCAATCCGCATGGAGAAGAT 1789
||||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1736 ACTACTCACATCAATGGAGAGCATGGGGAGCATGTTTTGTCCAATCTGCATGGAGAAGAT 1795
Query 1790 ACAAGCGAAGAAAGCTCGCGAAAGAACTCAGCCTTCATGAAAGTAGCGGATACTATTACA 1849
|||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||
Sbjct 1796 ACAAGCGAAGAAAGCTTGCGAAAGAGCTCAGCCTTCACGAGAGTAGCGGATACTATTACC 1855
Query 1850 CGGATGAAACAGGTTACAATGAAGAAGACGAAGAAACTAGAGAGTATTACTATGGAAGCG 1909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1856 CGGATGAAACAGGTTACAATGAAGAAGACGAAGAAACTAGAGAGTATTACTATGGAAGTG 1915
Query 1910 ACGAGGAGGATATGGAAGGCGGATCAATGGACAACACAAACAACAATCAAAATCTTGGAG 1969
||||||| | || ||||||||||||||||||||| || | ||||
Sbjct 1916 ACGAGGA--A---GG----CGGATCAATGGACAACACAAA------TC----TG--GGAG 1954
Query 1970 CAACGATCTTAGCATCTAAATTCGCGGCAAACACGAGAAGAGGCACAAATCAAAAGGCTT 2029
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1955 CAACGATCTTAGCATCTAAATTTGCGGCGAACACGAGAAGAGGAACAAATCAAAAGGCTT 2014
Query 2030 CAAGTAGTAGTACTGGTAAAAAAGATGGATCTTCAAGCAGTTTGAAGATGCCTCAACTAT 2089
||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 2015 CAAGTAGTAGTACTGGTAAGAAAGATGGATCTTCCACCAGTTTGAAGATGCCTCAACTAT 2074
Query 2090 TCAAACCAGATGAGCCTGATTTCTCTATAGATAAAGAAGACGTTTAAAGTGTAGACATTA 2149
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2075 TCAAACCAGATGAGCCTGATTTCTCTATAGATAAAGAAGACGTTTAAAGTGTAGTCATTA 2134
Query 2150 TGAGCAAAAAACTT--GTGTGAACTGTTTCGTTTTAGATGGTACATAGATAGGAAA-TCC 2206
|| ||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| |||
Sbjct 2135 TGGGCAAAAAACTTTTGTGTGAACTGTTTGGTTTTAGATGGTAAATAGTTAGGAAACTCC 2194
Query 2207 CATAAATTATTTGAACTTCTAAtttttttcttttcttttttttttGTTTCGGTTTG-GGA 2265
| ||| |||||| ||||| |||||||| |||||||||| ||||||||||| |||
Sbjct 2195 CTTAA-TTATTTCAACTTGTAATTTTT--CTTTTCTTTTC-----GTTTCGGTTTGAGGA 2246
Query 2266 ATGTTATTAGATATAGAAAACGAGTGTAGAGTAATAATACATTGTTATTAAACTGT 2321
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2247 -TGTTA---GATATAGAAAACGAGTGTAGAGTAAAAATACATTGTTCTTAAACTGT 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115210250775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5