BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488332
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14900.1 | Symbols: | helicase associated (HA2) domain-cont... 1315 0.0
AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:23... 785 0.0
AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:19... 732 0.0
> AT5G14900.1 | Symbols: | helicase associated (HA2) domain-containing
protein | chr5:4822676-4823581 REVERSE LENGTH=906
Length=906
Score = 1315 bits (712), Expect = 0.0
Identities = 832/891 (93%), Gaps = 4/891 (0%)
Strand=Plus/Plus
Query 2 CAAACCTTGCAAACACAGTTCTGACCTTGAAAAGACTGGGTGTGAAAAACTTGGTACGCT 61
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 5 CAAACCTTGCAAACACAGTTCTGACCTTGAAAGGACTTAGTGTGAAAAACTTGGTACGCT 64
Query 62 TCGATCTTATGGATGCTCCTGCTCCTGAGACCCTCGCTCGGGCCTTGGACGATTTGTATC 121
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 65 TCGATCTTATAGATTCTCCTGCTCCTGATACCCTCGCTCGGGCCTTGGACGATTTGTATC 124
Query 122 ATTTGGGAGCACTAGATGATGAAGGTAACTTGACAAAGACAGGTGAGATGATGAGTGAGT 181
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 125 ATTTGGGAGCACTTGATGATGACTGTAACTTGACAAAGACAGGTGAGATGATGAGTGAGT 184
Query 182 ATCCCTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAA 241
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 TTCCTTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGCTCAA 244
Query 242 ACGAGATTCTTTCGATTTCCGCGATGTTATCAGTACCAAATTGTTTCATCAGGCCAAGAG 301
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ACGAGATTCTTTCGATTTCTGCGATGTTATCAGTACCAAATTGTTTCATCAGGCCAAGAG 304
Query 302 GAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGTTTTGCACACATTGATGGAGACC 361
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 305 GAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGCTTTGCACACATTGATGGAGATC 364
Query 362 ACCTCACACTCTTGAATGTGTTCCACGCTTTCTTGCAAAACAACCAAGACTCAGATTGGT 421
| |||||||| |||||| ||||||| |||||||||||||||||||||||| || ||||||
Sbjct 365 ATCTCACACTTTTGAATTTGTTCCATGCTTTCTTGCAAAACAACCAAGACCCAAATTGGT 424
Query 422 GCT--ACGAAAAATTCATAAACTACAGAGCAATGAAGTCTGCAGTTAGTGTAAGAGAGCA 479
||| || ||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 425 GCTGTAC-AAAG-TTCATCAACTACAGAGCAATGAAGTCTGCAGTTAGTGTTAGAGAGCA 482
Query 480 GCTGGTCCGGATCATGTCGAGGTTTCAGATTAAGTTGTGCAGCCCAGGTTTCAACAGCCG 539
| ||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| |
Sbjct 483 GTTGGTCCGGATCATGTTGAGGTTTCAGATTAAGTTGTGTAGCCCTGATTTCAACAGCAG 542
Query 540 CGACTATTACGTCAACATTAGAAAGGCCTTGCTTGCCGGTTATTTCATGCAGGTGGCTCA 599
||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 543 GGACTACTACGTCAACATAAGAAAGGCCTTGCTTGCAGGTTATTTCATGCAAGTGGCTCA 602
Query 600 CCTAGAACGCACTGGCCATTACTTGACGTTCAGAGATAAGGACGACCAAGTGGTTCACTT 659
|||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||
Sbjct 603 CCTAGAACGCACTGGCCACTACTTGACTTTCAGAGATAAGGATGACCAAGTGGTGCACTT 662
Query 660 GCATCCATCTAATTGCCTGGATCACAAACCGGAGTGGGTGGTTTACAACGAATATGTTTT 719
|||||| || |||||| ||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 663 GCATCCTTCCAATTGCTTGGATCACAAACCAGAGTGGGTAGTTTACAACGAATACGTTTT 722
Query 720 CACTAGCCGAAATTTCATCCGAACTGTCACACATATTCGTGGTGAATGGCTAGTAGATGT 779
|||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 723 CACTAGCCGAAATTTCATCCGAACCGTCACACATATTCGCGGTGAATGGCTTGTAGATGT 782
Query 780 TGCACCACATTACTATAAGCTTGCCAACTTTCCCAATTCTGAGGCTAAACGAGTACTTCA 839
|||||||||||||||||||||||| |||||||||| ||||||||| |||||||| ||| |
Sbjct 783 TGCACCACATTACTATAAGCTTGCTAACTTTCCCAGTTCTGAGGCCAAACGAGTTCTTGA 842
Query 840 AAAGCACTATAAGAAGAGGAAACTGTCAGAAGAAAGGAGTTGTAAATTGTA 890
|| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 843 AAGGCACTATAAGAAGAGAAAACTGTCAGAAGAGAGGAGTTGTAAATTGTA 893
> AT3G62310.1 | Symbols: | RNA helicase family protein | chr3:23057245-23060731
REVERSE LENGTH=2622
Length=2622
Score = 785 bits (425), Expect = 0.0
Identities = 729/873 (84%), Gaps = 32/873 (4%)
Strand=Plus/Plus
Query 1 TCAAACCTTGCAAACACAGTTCTGACCTTGAAAAGACTGGGT-GTGAAAAACTTGGTACG 59
|||||||||||||| ||||||||||||||||||| ||||||| || | ||||||| |
Sbjct 1464 TCAAACCTTGCAAATACAGTTCTGACCTTGAAAAAACTGGGTATTG-ATGACTTGGTGCA 1522
Query 60 CTTCGATCTTATGGATGCTCCTGCTCCTGAGACCCTCGCT-CGGGCCTTGGACGATTTGT 118
||| ||| |||||||| | |||||||| || || || | | || ||||| || | ||||
Sbjct 1523 CTTTGATTTTATGGATCCCCCTGCTCCCGAAACACT-GATGCGAGCCTTAGAAGTTTTGA 1581
Query 119 ATCATTTGGGAGCACTAGATGATGAAGGTAACTTGACAAAGACAGGTGAGATGATGAGTG 178
|| | ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1582 ATTACTTGGGAGCACTGGATGATGATGGTAACTTGACAAAGACAGGTGAGATCATGAGTG 1641
Query 179 AGTAT-CCCTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACTGC 237
||| | ||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1642 AGT-TCCCCTTGGATCCACAGATGGCAAAGATGCTCATAGTCAGTCCTGAATTCAACTGC 1700
Query 238 TCAAACGAGATTCTTTC-GATTTCCGCGATGTTATCAGTACCAAATTG-TTTCAT-CAGG 294
|||||||||||||| || | |||| || ||| |||||||||| ||||| ||| || | ||
Sbjct 1701 TCAAACGAGATTCTCTCAG-TTTCAGCTATGCTATCAGTACCGAATTGCTTT-ATTC-GG 1757
Query 295 CCAAGAGGAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGTTTTGCACACATTGAT 354
|| |||| || ||||||||||||||||||||||| ||| |||| |||| |||||||||
Sbjct 1758 CCTAGAG-AG--GCTCAAAAAGCAGCAGATGAAGCTAAAGCTAGGTTTGGACACATTGAG 1814
Query 355 GGAGACCACCTCACACTCTTGAATGTGTTCCACGCTTTCTTGCAAAACAACCAAGACTC- 413
||||| ||||||||| | |||||||| | |||||||||| ||||||||| | || ||
Sbjct 1815 GGAGATCACCTCACATTGTTGAATGTCTACCACGCTTTCAAGCAAAACAATGAGGA-TCC 1873
Query 414 AGATTGGTGCTACGAAAAATTCATAAACTACAGAGCAATGAAGTCTGCAGTTAGTGTAAG 473
| |||||||||| ||||| ||||| ||| | ||||| ||||| ||||||| | ||| ||
Sbjct 1874 AAATTGGTGCTATGAAAACTTCATCAACAATAGAGCGATGAAATCTGCAGACAATGTTAG 1933
Query 474 AGAGCAGCTGGTCCGGATCATGTCGAGGTTTCAGAT-T-AAGTTGTGCAGCCCAGGTTTC 531
| ||||||| |||||||| ||||| || || || | | ||| |||||||| | | |||
Sbjct 1934 ACAGCAGCTAGTCCGGATAATGTCAAGATT-CA-ACCTGAAGATGTGCAGCACTGATTTT 1991
Query 532 AACAGCCGCGACTATTACGTCAACATTAGAAAGGCCTTGCTTGCCGGTTATTTCATGCAG 591
|||||||||||||| ||| ||||||| || |||||| ||||||||||||||||||||||
Sbjct 1992 AACAGCCGCGACTACTACATCAACATAAGGAAGGCCATGCTTGCCGGTTATTTCATGCAA 2051
Query 592 GTGGCTCACCTAGAACGCACTGGCCATTACTTGAC-GTTCAGAGATAAGGACGACCAAGT 650
||||||||| ||||||| ||||||||||||||||| || || | | | || |||||||
Sbjct 2052 GTGGCTCACTTAGAACGTACTGGCCATTACTTGACCGT-CA-A-A---G-ACAACCAAGT 2104
Query 651 GGTTCACTTGCATCCATCTAATTGCCTGGATCACAAACCGGAGTGGGTGGTTTACAACGA 710
|||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||||
Sbjct 2105 GGTTCATTTGCATCCATCCAATTGCTTGGATCACAAACCGGAGTGGGTAATCTACAACGA 2164
Query 711 ATATGTTTTCACTAGCCGAAATTTCATCCGAACTGTCACACATATTCGTGGTGAATGGCT 770
||||||||| |||||||| ||||||||| ||||||| ||| | |||||||||||||||||
Sbjct 2165 ATATGTTTTGACTAGCCGGAATTTCATCAGAACTGTGACAGACATTCGTGGTGAATGGCT 2224
Query 771 AGTAGATGTTGCACCACATTACTATAAGCTTGCCAACTTTCCCAATTCTGAGGCTAAACG 830
||| |||||||| | ||||| || | ||| | ||||||||||| | ||| || |||||
Sbjct 2225 AGTTGATGTTGCTTCTCATTATTACGATCTTTCGAACTTTCCCAACTGTGAAGCCAAACG 2284
Query 831 AGTACTTCAA-AAGCACTATAAGAAGAG-GAAA 861
||| | | | |||| ||||||||||| ||||
Sbjct 2285 TGTAAT-CGAGAAGCTTTATAAGAAGAGAGAAA 2316
> AT2G47250.1 | Symbols: | RNA helicase family protein | chr2:19399694-19403044
REVERSE LENGTH=2482
Length=2482
Score = 732 bits (396), Expect = 0.0
Identities = 719/871 (83%), Gaps = 37/871 (4%)
Strand=Plus/Plus
Query 1 TCAAACCTTGCAAACACAGTTCTGACCTTGAAAAGAC-TGG-GTGTGAAAAACTTGGTAC 58
|||||||||||||| ||||| ||||| ||||||| || ||| | || | ||||||| |
Sbjct 1369 TCAAACCTTGCAAATACAGTCCTGACATTGAAAAAACTTGGCAT-TG-ATGACTTGGTGC 1426
Query 59 GCTTCGATCTT-ATGGATGCTCCTGCTCCTGAGACCCTCGCT-CGGGCCTTGGACGATT- 115
||| ||| || |||||| |||||||||||||||| || | | ||||| || || | ||
Sbjct 1427 ACTTTGAT-TTCATGGATCCTCCTGCTCCTGAGACACT-GATGCGGGCATTAGA-GGTTC 1483
Query 116 TGTATCATTTGGGAGCACTAGATGATGAAGGTAACTTGACAAAGACAGGTGAGATGATGA 175
|| || ||||||||||||| |||||||||||||||||||||||||| ||||| || ||||
Sbjct 1484 TGAATTATTTGGGAGCACTTGATGATGAAGGTAACTTGACAAAGACGGGTGAAATAATGA 1543
Query 176 GTGAGTATCCCTTAGACCCACAGATGGCAAAGATGCTCATAGTCAGTCCTCAATTCAACT 235
|||| | |||||| || ||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1544 GTGAATTTCCCTTGGATCCACAAATGTCAAAGATGCTCATAGTCAGTCCTGAATTCAACT 1603
Query 236 GCTCAAACGAGATTCTTTCGATTTCCGCGATGTTATCAGTACCAAATTG-TTTCATCAGG 294
| || || |||||||| ||| |||| || |||||||||||||| ||||| ||| || ||
Sbjct 1604 GTTCCAATGAGATTCTCTCGGTTTCTGCAATGTTATCAGTACCGAATTGCTTT-GTCCGG 1662
Query 295 CCAAGAGGAGAAGCTCAAAAAGCAGCAGATGAAGCCAAATCTAGTTTTGCACACATTGAT 354
|| ||| ||| ||||||||||||||||||||||| ||| |||| |||| ||||||||||
Sbjct 1663 CCTAGA-GAG--GCTCAAAAAGCAGCAGATGAAGCTAAAGCTAGGTTTGGACACATTGAT 1719
Query 355 GGAGACCACCTCACACT-CTTGAATGTGTTCCACGCTTTCTTGCAAAACAACCAAGACTC 413
||||| ||||| || | | | || |||| |||||| | | ||||||||| ||||| |
Sbjct 1720 GGAGATCACCTGACGTTGC-TAAACGTGTACCACGCCTACAAGCAAAACAATGAAGACCC 1778
Query 414 AGATTGGTGCTACGAAAAATTCATAAACTACAGAGCAATGAAGTCTGCAGTTAGTGTAAG 473
| | ||||| | ||| || || | ||| ||||||||||||| ||||||| | ||| ||
Sbjct 1779 AAACTGGTGTTTCGAGAACTTTGTCAACAACAGAGCAATGAAATCTGCAGACAATGTCAG 1838
Query 474 AGAGCAGCTGGTCCGGATCATGTCGAGGTTTCAGAT-T-AAGTTGTGCAGCCCAGG-TTT 530
| ||||||| || ||||| |||||||||||| | || | ||| |||||||| | || |||
Sbjct 1839 ACAGCAGCTAGTGCGGATAATGTCGAGGTTT-A-ATCTGAAGATGTGCAGCAC-GGATTT 1895
Query 531 CAACAGCCGCGACTATTACGTCAACATTAGAAAGGCCTTGCTTGCCGGTTATTTCATGCA 590
||||||||||||||| || |||||||| ||||||||| ||||||| |||||||| |||||
Sbjct 1896 CAACAGCCGCGACTACTATGTCAACATAAGAAAGGCCATGCTTGCTGGTTATTTTATGCA 1955
Query 591 GGTGGCTCACCTAGAACGCACTGGCCATTACTTGA-CGTTCAGAGATAAGGACGACCAAG 649
||||||||||||||||||||||||||||||||||| || ||| |||| | ||||||
Sbjct 1956 GGTGGCTCACCTAGAACGCACTGGCCATTACTTGACCG-TCAAAGAT----A--ACCAAG 2008
Query 650 TGGTTCACTTGCATCCATCTAATTGCCTGGATCACAAACCGGAGTGGGTGGTTTACAACG 709
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 2009 TGGTTCACTTGCATCCATCTAATTGCCTGGATCACAAACCAGAGTGGGTGATTTACAATG 2068
Query 710 AATATGTTTTCACTAGC-CGAAATTTCATCCGAACTGTCACACATATTCGTGGTGAATGG 768
||||||| || |||| | || |||||||| || ||||| ||| |||| || |||||||||
Sbjct 2069 AATATGTCTTGACTA-CTCGGAATTTCATACGCACTGTTACAGATATCCGCGGTGAATGG 2127
Query 769 CTAGTAGATGTTGCACCA-CATTACTATAAGCTTGCCAACTTTCCCAATTCTGAGGCTAA 827
|||| |||||||| | | ||||||||| | ||| ||||||| ||||| | ||| || ||
Sbjct 2128 TTAGTCGATGTTGCTC-AGCATTACTATGATCTTTCCAACTTCCCCAACTGTGAAGCAAA 2186
Query 828 ACGAGTACTTCAA-AAGCACTATAAGAAGAG 857
||||| || | | |||| || ||||||||
Sbjct 2187 ACGAGCCCT-CGAGAAGCTTTACAAGAAGAG 2216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5