BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488333
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14910.1 | Symbols: | Heavy metal transport/detoxification ... 1035 0.0
> AT5G14910.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:4823714-4825373 FORWARD LENGTH=815
Length=815
Score = 1035 bits (560), Expect = 0.0
Identities = 645/686 (94%), Gaps = 5/686 (1%)
Strand=Plus/Plus
Query 1 CACAACCTTATCGAGTG-AAGAAGATTTGGTTAGTAGCGAAAAATGGCGTCGATCGCAGC 59
||||||||||||||||| ||||||||| ||| ||||| |||||||||||||||| |||||
Sbjct 59 CACAACCTTATCGAGTGAAAGAAGATTGGGTCAGTAGTGAAAAATGGCGTCGATTGCAGC 118
Query 60 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCATCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 TTCTTCTACCTTTCACTCGTTTTGCAGAACCAAAAGCCCTAATCTTTCTTCGACCCACCT 178
Query 120 TCTCCCTTTGTCTAAAAATCTCAACTTTAAGACCAGAGCTATCGGAAATAGCCG-AATTT 178
||| |||||||| ||||| ||||||||| |||||||||||||||||||||||| || ||
Sbjct 179 TCTTCCTTTGTCGAAAAACCTCAACTTTCGGACCAGAGCTATCGGAAATAGCCGCAA-TT 237
Query 179 GCAGTTTTGCTGGGTTTATGAAACAGAATCGCCTTGGGTTAATGAAGCTTTCGTCGGTTG 238
||||||||||||||||||| ||||| ||||||||||| || | |||||||||||| |||
Sbjct 238 GCAGTTTTGCTGGGTTTATAAAACAAAATCGCCTTGGATTGAGGAAGCTTTCGTCTATTG 297
Query 239 GAGAAGGAGGAGAAGATGTCGCAGTCGCAGAGGAGCAACAGCAAGAGACTGTCTCTGTTC 298
||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 298 GAGAAGGAGGAGAAGGTGTCGCTGTCGCAGAGGAGCAACCGCAAGAGACTGTCTCTGTTC 357
Query 299 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTTCAGGCTGATGGAACTTTGAACGAAG 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 CTGTCTCTCCTTCAGACATGCTCACCATGTTTTTCCAGGCTGATGGAACTTTGAACGAAG 417
Query 359 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAGCTATTCCTAATGTGACAAGGGCCTTACAGGATATTGATGGAGTTTCCAATTTAAAGG 477
Query 419 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTCAAAGCAAACGACGGTTCAAGCAA 478
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 478 TTCAGGTTTCTGAAGGTGTTGCCGTCGTTGAGCTTTTGAAGCAAACAACGGTTCAAGCAA 537
Query 479 CAGGAGTGGCGTCAAGCTTGGTGGAGACTATACAAGGAGCTGGATTTAAATTACAGACTT 538
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 538 CAGGAGTGGCGTCAAACTTGGTGGAGACTATACAAGGAGCTGGATTTAAGTTACAGACTT 597
Query 539 TGAATTTGAGCTTTGAAGATGAAGATGAAGTTCTTATCTAGTTAAATCATC-TTTCTCCT 597
||||| |||| ||||||||||| ||||| |||||| |||||| |||||||| ||| ||||
Sbjct 598 TGAATCTGAGTTTTGAAGATGACGATGAGGTTCTTGTCTAGTGAAATCATCCTTT-TCCT 656
Query 598 CCATTTTGTGATTAAAGAAACACATAATGTTCAATTTTAGGGATACTTTCTTTCATTTGT 657
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 657 CCATTTTGTGATTAAAGAAACTCATAATGTTCAATTCTAGGGATAATTTCTTTCATTTGT 716
Query 658 TCCTCTCAAGAAAACAAATGTGGTAA 683
|||||| |||||||||||||||||||
Sbjct 717 TCCTCTAAAGAAAACAAATGTGGTAA 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5