BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488334
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14920.1 | Symbols: | Gibberellin-regulated family protein ... 1338 0.0
> AT5G14920.1 | Symbols: | Gibberellin-regulated family protein
| chr5:4826479-4827980 FORWARD LENGTH=1166
Length=1166
Score = 1338 bits (724), Expect = 0.0
Identities = 977/1089 (90%), Gaps = 58/1089 (5%)
Strand=Plus/Plus
Query 1 TATTTATGGATAATATGGTAAATAAATAAGGAACTTCTATTTAAAGCACAAAAGG-CAAT 59
||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| | |
Sbjct 16 TATTTATGGATAATATGGTTAATAAATAAGGAACTTCTATTTATATCACAAAAGGTC-AC 74
Query 60 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCACAAAAAATGGCTCTCTCACT 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 75 TGGTCTTCTTCGTGTGACTTCACCACTTTCTCATCTCCCAC-AAAAATGGCTCTCTCACT 133
Query 120 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TCTTTCAGTCTTTATCTTTTTCCATGTCTTTACCAATGTTGTTTTTGCTGCTTCAAATGA 193
Query 180 GGAATCCAAGGCATTAGTTTCTTTACCAACGCCAACTCTTCCATCGCCATCTCCGGCTAT 239
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 194 GGAATCCAACGCCTTAGTTTCTTTACCAACGCCAACACTTCCATCGCCATCTCCGGCTAC 253
Query 240 CAAACCACCGTCGCCGGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 299
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CAAACCGCCGTCGCCAGCTCTCAAACCGCCGACGCCGTCGTACAAGCCACCCACGCTGCC 313
Query 300 AACTACTCCTATTAAACCACCTACCACAACTAC-TCCGGTCAAACCTCCCACCACTCCGG 358
||||||||||||||||||||| ||||||| || ||||||||||||||| || | |||||
Sbjct 314 AACTACTCCTATTAAACCACCCACCACAAA-ACCTCCGGTCAAACCTCCAACTATTCCGG 372
Query 359 TTACACCAACAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 418
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TTACACCAGTAAAACCTCCGGTTTCAACTCCTCCGATCAAACTACCGCCGGTACAACCAC 432
Query 419 CTACGTACAGACCCCCAACGCCAACAATTAAACCACCGTCCGTCCAACCACCTACGTACA 478
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 433 CTACGTACAAACCCCCAACGCCAACAGTTAAACCACCGTCCGTCCAACCACCTACGTACA 492
Query 479 AACCCCCAACGCCACCGGTTAAACCACCCACTACATCACCGATTAAACCACCAACGACGC 538
|||||||||| ||| |||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 493 AACCCCCAACTCCAACGGTTAAACCACCCACTACATCACCGGTTAAACCACCCACTACGC 552
Query 539 CACCGGTTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTT 597
|||| ||| || | ||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 553 CACCAGTTCAATCACCGCCGGTCCAACCACCTACGTACAAACCCCCAACGTCA-CCGGTT 611
Query 598 AAACCACCCACCACAACATC-ACCGGTTAAACCACCTACGTACAAACCCCCAACGTCACC 656
||||||||||||||||| || |||||||||||| || | || || | | || ||||
Sbjct 612 AAACCACCCACCACAAC-TCCACCGGTTAAACC-CC--C---CA--CCACGA-CGCCACC 661
Query 657 GGTT-ATACCACCCACGACACCACCAGTTAAACCACCAACTGCACCACCTGTCAAACCTC 715
||| | |||||| ||| || | | | || |||||| || ||| || ||||| |
Sbjct 662 GGTCCA-ACCACCTACGT-AC-A--A-TC---CC-CCAACT--AC-ACCGGTTAAACCAC 708
Query 716 CGACAGTACC---TGTCAAACCTCCGACGACACCACCTCCCGTAAGAACTCGGATAGATT 772
| |||| || |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 709 CTACAGCGCCGCCTGTCAAACCTCC-A--ACACCACCTCCCGTAAGAACTCGGATAGATT 765
Query 773 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCGTGCCTTTATGTGGGACGAGGTGTGGGCAACACTCGAGGAAGAACGTATGTATGAGAG 825
Query 833 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCTCCTGGCACGTACGGTAATAAGG 892
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 826 CGTGCGTCACGTGCTGCTACCGCTGCAAGTGTGTTCCCCCAGGCACCTACGGTAATAAGG 885
Query 893 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGCGGAAAATCCAAATGTCCTT 952
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 886 AGAAGTGTGGATCTTGTTACGCCAACATGAAGACACGTGGTGGAAAATCCAAATGTCCTT 945
Query 953 GAACCTTTTTATGACGATGGT----AAA-----T---------CAATGGAGTTTTTATAA 994
|||||||| |||||||||||| ||| | |||||||||||||||||
Sbjct 946 GAACCTTTATATGACGATGGTTGTTAAACGAAATAATTTAAATCAATGGAGTTTTTATAA 1005
Query 995 GTTTGTAATGCGTTTATTTTTGTTTTAGTACCCCTTTGAGTTGGATCTTTGTTTACGGAA 1054
||||||||||||||| |||||||| ||||| || ||||||||||||||||||||| |
Sbjct 1006 GTTTGTAATGCGTTTGTTTTTGTTATAGTAATA-TT-GAGTTGGATCTTTGTTTACGGGA 1063
Query 1055 TGTAGAATA 1063
||||||||
Sbjct 1064 CGTAGAATA 1072
Score = 130 bits (70), Expect = 3e-29
Identities = 148/182 (81%), Gaps = 19/182 (10%)
Strand=Plus/Plus
Query 429 ACCCCCAACGCCAACAATTAAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAA 487
|||| | |||||| || || || ||||| || ||||||||||||||||||||||||||||
Sbjct 542 ACCCACTACGCCACCAGTTCAATCACCG-CCGGTCCAACCACCTACGTACAAACCCCCAA 600
Query 488 CGCCACCGGTTAAACCACCCACTACA--TC-ACCGATTAAACCACCAACGACGCCACCGG 544
|| ||||||||||||||||||| ||| || |||| ||||||| || | || | || |
Sbjct 601 CGTCACCGGTTAAACCACCCACCACAACTCCACCGGTTAAACCCCC--C-AC-C-AC-G- 653
Query 545 TTAAACCTCCGCCGGTCCAACCACCAACGTACAAACCCCCAACG-CAACCGGTTAAACCA 603
| | || |||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 654 --A--CG-CCACCGGTCCAACCACCTACGTACAATCCCCCAACTACA-CCGGTTAAACCA 707
Query 604 CC 605
||
Sbjct 708 CC 709
Score = 89.8 bits (48), Expect = 5e-17
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 619 CCGGTTAAACCACCTACGTACAAACCCCCAACGTCACCGGTTATACCACCCACGACA-C- 676
||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 570 CCGGTCCAACCACCTACGTACAAACCCCCAACGTCACCGGTTAAACCACCCACCACAACT 629
Query 677 C-ACCAGTTAAACC 689
| ||| ||||||||
Sbjct 630 CCACCGGTTAAACC 643
Score = 76.8 bits (41), Expect = 4e-13
Identities = 54/60 (90%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 448 AAACCACCGTCC-GTCCAACCACCTACGTACAAACCCCCAACGCCACCGGTTAAACCACC 506
|||| |||| || || |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 411 AAACTACCG-CCGGTACAACCACCTACGTACAAACCCCCAACGCCAACAGTTAAACCACC 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5