BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488337
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14930.2 | Symbols: SAG101 | senescence-associated gene 101 ... 1908 0.0
> AT5G14930.2 | Symbols: SAG101 | senescence-associated gene 101
| chr5:4828641-4830955 FORWARD LENGTH=1913
Length=1913
Score = 1908 bits (1033), Expect = 0.0
Identities = 1341/1485 (90%), Gaps = 40/1485 (3%)
Strand=Plus/Plus
Query 192 AAGATTCAGGTCTTGGAA--TCAAGATTTACCGAGAAGAGAAATTCACACTTGTGGTTTT 249
|||||||||||| | ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 265 AAGATTCAGGTC-TAGAATTTC-AGATTCACCGAGAAGAGAAATTCACACTTGTGGTTTT 322
Query 250 T-GTCGCACCACCGGTTTTCA-CA--AGTAGCTCTGATTCTACTCTTCTTCCTGGGAAAG 305
| | |||||||||| | | || | ||||||||||||||||||||||||| || |||||
Sbjct 323 TAG-CGCACCACCGATCTGCAGAAGTAGTAGCTCTGATTCTACTCTTCTTCATGTGAAAG 381
Query 306 A-AAATGAAAATCCGTTT-CCATTCCTCTGCTCCGAGATTAACCCATCATTCTCTCTTCA 363
| ||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 382 ATAAA-GAAAATCC-TTTCCCATTCCTCTGCTCCGAGAACAACCCATCATTCTCTCTTCA 439
Query 364 CACACCTGCTTTAAACCTTTTCACCTCTGCTTATAAAAGTCTCACCAACCTCCAATCAGA 423
|||||||||||| |||||||| |||||||||| || |||||||| ||||| |||||||
Sbjct 440 CACACCTGCTTTTAACCTTTTTACCTCTGCTTCTACTAGTCTCACTTACCTCAAATCAGA 499
Query 424 GTTGCTTCAAACGCTTAAGTCTGAGAAACCGGTGATCATCACTGGAGCTTCGTTAGGAGG 483
|||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 500 GTTGCTCCAAACGCTCAAGTCTGAGAAACCGGTGATCATCACCGGAGCTGCGTTAGGAGG 559
Query 484 GTCCGTTGCATCTCTCTATACGCTATGGCTTCTAGATACCATCGACCCGAAGTTAAAACG 543
||| ||||||||||||||||||||||||||||| || |||||||| |||| |||||||||
Sbjct 560 GTCTGTTGCATCTCTCTATACGCTATGGCTTCTTGAAACCATCGAACCGACGTTAAAACG 619
Query 544 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGTTTCTCTTCAAGAGATTCT 603
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 620 TCCCTTATGCATCACATTTGGCTCGCCATTGATCGGAGACGCTTCTCTTCAACAGATTCT 679
Query 604 TGAGAATTCTGTGAGGAATTCATGTTTCCTTCACGTGGTGGCAGCAGCACAAACTCGCAT 663
|||||| ||||||||||||||||||||||||||||| | | | ||||||||||||| ||
Sbjct 680 TGAGAACTCTGTGAGGAATTCATGTTTCCTTCACGT--T-GTATCAGCACAAACTCGTAT 736
Query 664 CAAG-TCGGATTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGACTCCGGATGTG 722
|||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 737 CAAGAT-GGACTTCTTCAAACCTTTTGGAACGTTTTTGATCTGTTTTGATTCCGGATGTG 795
Query 723 TTTGCATCGAGGACCCTGAGGCGGTCATAGAGTTGCTAAACGGTGTTCATGATTCGGAAC 782
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 796 TTTGCATCGAGGACCATGTGGCGGTCACAGAGTTGCTAAACGGTGTTCATGATTCGGGTC 855
Query 783 AAGTAGACTACGGCCAAGTTCTACGTCGTCTGGACCAATCCATGTTGTCTATAGCGGATT 842
|||||||||| ||||||||||| |||||| |||||||||||||||||| | |||||||
Sbjct 856 TAGTAGACTACAGCCAAGTTCTAAATCGTCTTGACCAATCCATGTTGTCTCTGGCGGATT 915
Query 843 CAACATTCATCCCTGAAGCTGTTATCAAAGGAATGGAGGAACGTGCGGAAATGAAAGATC 902
||| ||| |||||||||| ||||||||||||||| ||| ||||||| ||||||||| |||
Sbjct 916 CAAGATTGATCCCTGAAGATGTTATCAAAGGAATAGAGAAACGTGCAGAAATGAAAAATC 975
Query 903 TGCGATTTG--AT-ATGTTTAAGAAATTAAACGACATGAAGATATCGATGGCGTATATAG 959
||||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 976 TGCGATTTGATATGATGTTTAAGAAACTAAACGACATGAAGATATCGATGGCTTATATAG 1035
Query 960 AGTGGTACAAAAAGGAATGC-AGGAAGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1018
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1036 AGTGGTACAAAAAGAAATGCAAGG-AGGTCAAGATCGGTTACTACGATCGGTTCAAGACT 1094
Query 1019 CAACACGCGTTTCCGTCTTCGGAGTTTGATATAAAAATCAAGAAT---CACAAATTAGAG 1075
|| | |||||||||||| |||||||||||||| ||||||||| ||||||| ||||
Sbjct 1095 CAGCTCGCGTTTCCGTCGAAAGAGTTTGATATAAACATCAAGAATCACCACAAATCAGAG 1154
Query 1076 CTAAACCGTTACTGGAAATCAGTGGTTGAAGAAGTAGAGAAGAAGCCGCAGAGCGATATA 1135
|||||||||| ||||||||||| |||||||||||||||| || ||||||||||||| |
Sbjct 1155 CTAAACCGTTTTTGGAAATCAGTAGTTGAAGAAGTAGAGAGGAGGCCGCAGAGCGATGCA 1214
Query 1136 TCGATTCTCAAGAGACGGTTTCTATACTCTGGGAACAATTACAGACGGATGATTGAACCG 1195
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 1215 TCGATTCTCAAGAGACGGTTTCTATTCTCGGGGAACAATTACAGACGGATGATCGAACCA 1274
Query 1196 CTCGATATTGCTGAATATTACCTCGAGGGTGGGAAAGAGTATCGAACCT-CGGGAAGGTC 1254
|||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1275 CTCGATATTGCTGAATATTACCTCGAGGGTCGGAAAGAGTATCGAA-CTACGGGAAGGTC 1333
Query 1255 TCGCCAATATGTTATGCTCGAGAAATGGTTTGGAAT-G----GA-ATTGATAGAAAAGGA 1308
|| ||| ||||||||||| ||||||||||||||||| | || ||| |||||||||||
Sbjct 1334 TCACCACTATGTTATGCTTGAGAAATGGTTTGGAATGGAATCGATATTAATAGAAAAGGA 1393
Query 1309 AAGATGCAAAAACAGAGATTTGAGTGATCTTTTAACGTTTGATTCTTGTTTTTGGGCTGA 1368
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1394 AAGATGCAAAAAGAGAGATTTGAGTGATCTTTTGACGTTTGATTCTTGTTTTTGGGCTGA 1453
Query 1369 AGTTGAGGATTCGTTGATTGTAATTAATCAGCTGAATACAACCGTGGGGATGAGTGACGA 1428
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 1454 AGTTGAGGATTCGTTGATTGTAATTAATCAGTTGAATACAACTGTGGGGATGAGAGACGA 1513
Query 1429 TGCGAGAGAAGCACTGACCAGAAAACTCGTGAAGTTTAAGGAATACGTGTGGGAGATGAT 1488
|| |||||| | | |||| |||||||||||| ||||| ||| ||||||||||||||| ||
Sbjct 1514 TGTGAGAGAGGTATTGACTAGAAAACTCGTGGAGTTTGAGGGATACGTGTGGGAGATAAT 1573
Query 1489 CAGAAAACGTGAGGTTTCGCCGGAGATTTTCTTAGAGAAAAGCAGTTTCATGAAGTGGTG 1548
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1574 CACAAAACGTGAGGTTTCGCCGGAGATATTCTTAGAGGAAAGCAGTTTCATGAAGTGGTG 1633
Query 1549 GAAAGAGTACAAAAAGATCAAAGGCTATAATTCTCCACCTTCATACTTCACCGAGTATAT 1608
|||||||||||||||||||||||||| ||||||| | ||||||| ||||||| |||
Sbjct 1634 GAAAGAGTACAAAAAGATCAAAGGCTTTAATTCT-----T-CATACTTGACCGAGTTTAT 1687
Query 1609 GAACACCGGGAAGTACGAGAGTTATGGTAAGCCGCAATAATGGAA 1653
||||||| ||||||||||||||||||||||| | |||||||||||
Sbjct 1688 GAACACCCGGAAGTACGAGAGTTATGGTAAGTCACAATAATGGAA 1732
Score = 73.1 bits (39), Expect = 8e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 ACTCTCATTTTCAGACATTTATTTCTCTCAGTCTTACAATATAAGTTT 48
|||||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 6 ACTCTCGTTCTCAGACATTTATTTCTCTCAGTCTTACAATATAAATTT 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5