BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488341
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
AT5G14970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1934 0.0
> AT5G14970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G14910.1);
Has 579 Blast hits to 397 proteins in 95 species: Archae -
0; Bacteria - 294; Metazoa - 0; Fungi - 0; Plants - 86; Viruses
- 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:4847278-4848867
FORWARD LENGTH=1265
Length=1265
Score = 1934 bits (1047), Expect = 0.0
Identities = 1174/1234 (95%), Gaps = 14/1234 (1%)
Strand=Plus/Plus
Query 1 gagagagaaaagaaga-agaaacagaaacaga----gagCTCGAGACTCTCTCTTATTAA 55
|||||||| ||||| | ||||||||||||||| ||||||||||| ||| ||||||
Sbjct 34 GAGAGAGAGAAGAA-ACAGAAACAGAAACAGAGCTCGAGCTCGAGACGCTC-AATATTAA 91
Query 56 TGGCGGCCGCATCAGCACGAGCCTTCTTCATGCTCTCTCGTGTAACGGACCTATCAAAGA 115
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 92 TGGCGGCCGCATCAGCACGAGCTTTCTTCATGCTCTCTCGTGTAACTGACCTTTCAAAGA 151
Query 116 AGAAGCTAATCCTTCACCAACCACCACCGTCTTCGTCTCCTCACCGGTTACCTTGTGCTC 175
| ||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||
Sbjct 152 AAAAGCTAATCCTTCACCAACCACCACCGTCGTCATCTCCTCACCGGCTACCTTATGCTC 211
Query 176 CGAATCGTGCCGTGTCTTCCTCCGCTGTAATTAGCTGTCTCAGCGGTGGTGGAGTTTCCT 235
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 212 CGAATCGTGCGGTGTCTTCCTCCGCTGTAATCAGCTGTCTCAGCGGTGGTGGTGTTTCCT 271
Query 236 CCGACGATTCATATGTGTCTACTCGTCGGTCTAAGTTAGATCGAGGTTTCGCTGTGATCG 295
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CCGACGATTCGTATGTATCTACTCGTCGGTCTAAGTTAGATCGAGGTTTCGCTGTGATCG 331
Query 296 CGAATTTGGTGAACCGGATCCAGCCGCTTGATACGTCTGTTATCTCTAAAGGCTTATCCG 355
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 332 CGAATTTGGTGAATCGGATCCAGCCGCTTGATACGTCTGTTATCTCTAAAGGCTTATCTG 391
Query 356 ATTCAGCTAAGGATTCGATGAAGCAGACGATTTCTTCTATGCTTGGACTTCTTCCTTCCG 415
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 392 ATTCAGCTAAGGATTCGATGAAACAGACGATTTCTTCTATGCTTGGTCTTCTTCCTTCCG 451
Query 416 ATCAATTCTCCGTTTCCGTTACCATCTCCGAGA-AGCCTCTTTACCGTCTCCTTATTTCT 474
||||||| |||||||||||||| |||||||| | |||||||||| |||||||||||||||
Sbjct 452 ATCAATTTTCCGTTTCCGTTACTATCTCCGA-ACAGCCTCTTTATCGTCTCCTTATTTCT 510
Query 475 TCCATCATCACCGGGTATACATTGTGGAATGCGGAGTATCGTGTATCACTGAGGAGGAAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCCATCATCACCGGGTATACATTGTGGAATGCGGAGTATCGTGTATCACTGAGGAGGAAT 570
Query 535 TTCGATATACCGATTGATCCTAGAAAGGAGGAGGAGGATCAATCTTCGAAAGACAATGTT 594
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTTGATATACCGATTGATCCTAGAAAGGAGGAGGAGGATCAATCTTCGAAAGACAATGTT 630
Query 595 AGATTTGGTTCAGAGAAGGGAGTGAGTGAGGACTTAGGGAATTGTGTTGAGGAATTTGAG 654
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 631 AGATTTGGTTCAGAGAAGGGAATGAGTGAGGATTTAGGGAATTGTGTTGAGGAATTTGAG 690
Query 655 AGATTGAGTCCTCAGGTGTTTGGAGACTTGTCACCTGAAGCGTTGAGCTATATTCAGCAT 714
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 691 AGACTGAGTCCTCAGGTGTTTGGAGACTTGTCACCTGAAGCGTTGAGTTATATTCAGCTT 750
Query 715 TTGCAGTCTGAGTTATCTTCCATGAAAGAGGAGCTAGATTCACAAAAGAAGAAAGCTTTA 774
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTGCAGTCTGAGCTATCTTCCATGAAAGAGGAGCTAGATTCACAAAAGAAGAAAGCTTT- 809
Query 775 CA-GATAGAATGTGAGAAAGGAAACAAGAATGATTTGTTGGATTATTTGCGTTCCTTAGA 833
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 810 GAGGATAGAATGTGAGAAAGGAAACAGGAATGATTTGTTGGATTATTTGCGTTCTTTAGA 869
Query 834 TCCCAAGATGGTGACTGAGTTATCTCAACTGTCTTCACCGGAAGTGGAAGAGATCGTGAA 893
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 870 TCCCGAGATGGTGACTGAGTTATCTCAACTGTCTTCACCGGAAGTGGAAGAGATTGTGAA 929
Query 894 CCAACTTGTCCAAAACGTGTTAGAGAGGCTCTTCGAAGACCAGACTACTTCAAATTTCAT 953
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CCAGCTTGTCCAAAACGTATTAGAGAGGCTCTTCGAAGACCAGACTACTTCAAATTTCAT 989
Query 954 GCAAAATCCTGGCATAAGGACTACAGATGGTGGTGATGGAACTGGTAGAAAGGTAGACAC 1013
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 990 GCAAAATCCTGGCATAAGGACTACAGAAGGTGGTGATGGAACTGGTAGAAAGGTGGACAC 1049
Query 1014 ATCCAGGGATTACCTTGCAAAGCTCCTTTTCTGGTGCATGCTATTGGGACATCATTTAAG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATCCAGGGATTACCTTGCAAAGCTCCTTTTCTGGTGCATGCTATTGGGACATCATTTAAG 1109
Query 1074 AGGTTTGGAGAATAGATTACATCTCAGTTGTGTCGTTGGGTTGCTGTAATATCAGAGAAT 1133
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1110 AGGTTTGGAGAATAGATTACATCTCAGCTGTGTTGTTGGGTTGCTGTAATATCAGAGAAT 1169
Query 1134 CAGAAAAAGGAGACCCaaaa-aaaaaaGAAACACCAATGTATATTCTTCTCCCTCATTTT 1192
|| ||||||||||| || | ||||||||||||| |||||||||||||||||| ||||||
Sbjct 1170 CATAAAAAGGAGAC--AAGATAAAAAAGAAACACAAATGTATATTCTTCTCCCCCATTTT 1227
Query 1193 GATTTCTTTAATCTAAGCGTTAAGTTATTATCTA 1226
||||||||||||||||||||||||||||||||||
Sbjct 1228 GATTTCTTTAATCTAAGCGTTAAGTTATTATCTA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60240654000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5