BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488344
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 412 7e-115
AT5G14995.1 | Symbols: | ECA1 gametogenesis related family pro... 340 3e-93
> AT5G15000.1 | Symbols: | Encodes a ECA1 gametogenesis related
family protein | chr5:4854875-4855171 FORWARD LENGTH=297
Length=297
Score = 412 bits (223), Expect = 7e-115
Identities = 273/297 (92%), Gaps = 4/297 (1%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCATTTTATCAGTGATCATGGCGTTG 60
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCTTTTTATCTGTGATCATGGCGTTG 60
Query 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATACCAAATCCCGGTGATTGCTTCTCG 120
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 61 CTTTGTCATCATCAATCCGAAGCTCAAGCGCCGATTCCAACTCCCGGTGATTGCTTCTCG 120
Query 121 TCAATAAAGAATGTTAAAGGTTGTGTCG-ATGCTCTGAAAGCTGCCACTAAAGGACATCT 179
||||| ||||| ||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 121 TCAATCAAGAAGGTTAAAGGTTGTG-CGGATGCTGTGAAAGCTGCCACTAAAGGACATCT 179
Query 180 TAAAGGTTTGGGCAAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTTTCC 239
| | |||||| ||||||||||||||||| |||||||| ||| | |||||||||||||||
Sbjct 180 TCTACGTTTGGTCAAGGATTGTTGCCACGTCATCAATGACCTTGCCGACGATTGTTTTCC 239
Query 240 GATCCTTTTCCCCGGAAAACACT-ACATTGCAGTACTCGTTAAGGATGCATGTGCTT 295
|||| ||||||||||||||| || ||||||| | |||||||||| |||||||| |||
Sbjct 240 GATCATTTTCCCCGGAAAAC-CTTACATTGCCGCACTCGTTAAGCATGCATGTTCTT 295
> AT5G14995.1 | Symbols: | ECA1 gametogenesis related family protein
| chr5:4853413-4853718 FORWARD LENGTH=306
Length=306
Score = 340 bits (184), Expect = 3e-93
Identities = 262/299 (88%), Gaps = 7/299 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACAAAACAGATCGTCACAGTGATGTTCTTCATTTTATCAGTGATCATGGCGTTG 60
||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||
Sbjct 1 ATGGGAATAAAACAGATCGTCAAAGTGATGTTCTTGTTTTTATGTGTGATCATGGCGTTG 60
Query 61 CTTTGTCATCATCAATCCGAAGCTCAAGC-GC-C-GATACCAAATCCCGGTGATTGCTTC 117
|| ||||||||||||||||||| |||||| || | || ||||| ||| | || |||||
Sbjct 61 CTCTGTCATCATCAATCCGAAGTTCAAGCGGCGCAGAAACCAAGTCCTGTTGCTTGCTGG 120
Query 118 TCGTCAATAAAGAATGTTAAAGGTTGTGTCGATGCTCTGAAAGCTGCCACTAAAGGACAT 177
||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||| ||
Sbjct 121 TCGTCAATAAACAAGGTTCAAGGTTGTGTGGATGCTGTGAAAGCTGCCACTAAAGGAGAT 180
Query 178 CT-TAAAGGTTTGGGCAAGGATTGTTGCCACGCCATCAATGGCCTCGTCGACGATTGTTT 236
| |||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct 181 -TATAAAGGTTTGAGCAAGGATTGTTGCCTCGCCATCTATGGCCTCATCGACGATTGTTT 239
Query 237 TCCGATCCTTTTCCCCGGAAAA-CACTACATTGCAGTACTCGTTAAGGATGCATGTGCT 294
|||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 240 TCCGATTGTTTTCAGCGGAAAACCA-GACATTGCAGTACTCGTTAAGGATGCATGTGCT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5