BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488346
Length=4684
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859127-486603... 7214 0.0
AT3G01320.1 | Symbols: SNL1 | SIN3-like 1 | chr3:106655-113618 ... 1951 0.0
> AT5G15020.1 | Symbols: SNL2 | SIN3-like 2 | chr5:4859127-4866031
REVERSE LENGTH=4702
Length=4702
Score = 7214 bits (3906), Expect = 0.0
Identities = 4441/4690 (95%), Gaps = 74/4690 (2%)
Strand=Plus/Plus
Query 1 GGGAGAGACCTCAAAGGCAAACAAATTCCGTCGTTGTttcttcttcttcttcattattcg 60
||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 1 GGGAGAGACCTCATAGG----CAAATTCCGTCCTCGTTTCTTCTTCTTCTTCATTATTCG 56
Query 61 agaaatt-ctctctctttctcg-ttctcAGTCGTAGCAACTCCTCTTCAAAATC-TTTAT 117
| ||||| || ||||| ||| | |||||||||||||||||||| ||||||| | ||| |
Sbjct 57 A-AAATTACTTTCTCTCTCTTGCTTCTCAGTCGTAGCAACTCCAATTCAAAA-CATTTCT 114
Query 118 CTCTCATTTG--------T-TT-TTCTGAATTTCACTCTGTTGTCATCGGAATTGTTCTT 167
|||||||||| | || ||||||||| ||||||||| |||||||||||||||||
Sbjct 115 CTCTCATTTGTTTTTTAATCTTCTTCTGAATTCCACTCTGTTCTCATCGGAATTGTTCTT 174
Query 168 CGGGTTTTGCACAATTCGGG-AATTTGAAG-TTTCGCCGGAATTTGATCGGAAGTGTTTT 225
|||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct 175 GGGGTTTGGCACAATTCGGGAAATTTGAAGTTTTCGCCGGAATTTGATCGGAAGTG-TTT 233
Query 226 CTTCTCGATTCCGGTCTTACTTGAGAGATCTGATTAATCTCTTCCCGGAGTCATATCTCT 285
||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 234 CTTATCGATTCCGCTCTTACTCGAGAGATCTGATTAATCTCTTCCCGGAGTTATATCTCT 293
Query 286 GGGAAATCTGGACCGCGAGAAACAATGAAGCGAATTAGGGATGATATTTACGCAACTGGG 345
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 GGGAAATCTGGAGAACGAGAAACAATGAAGCGAATTAGGGATGATATTTACGCAACCGGG 353
Query 346 TCTCAATTTAAACGTCCTTTGGGGTCTTCTCGTGGCGAATCATATGGGCAATCACCAATC 405
||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 354 TCTCAATTTAAACGTCCTTTGGGCTCTTCTCGTGGCGAATCATATGAGCAATCTCCAAT- 412
Query 406 CCTGGAAACGGTGGTACCGGAGGTGGGAGCATTGGTGACGGGGGAATTAACACTCA-AAA 464
| || ||| | ||| |||||||||||||| |||||||| |||||||| |||
Sbjct 413 -C-----AC--TGG-A--GGA---GGGAGCATTGGTGAAGGGGGAATCAACACTCAGAAA 458
Query 465 GTTGACTACCGATGATGCTTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCA 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 -TTGACTACCGATGATGCTTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCA 517
Query 525 AAGGGATAAATATGATATGTTCCTTGAGGTTATGAAAGACTTTAAGGCACAATGGATC-G 583
| || ||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 518 GCGAGACAAATATGATATGTTCCTTGAGGTTATGAAAGACTTTAAGGCACAAAAGA-CTG 576
Query 584 ATACAGCTGGTGTGATTTCACGAGTGAAGCAGCTGTTTAAGGGGCATAACAATTTGATTT 643
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 577 ATACATCTGGTGTGATTTCACGAGTGAAGGAGCTGTTTAAGGGGCATAACAATTTGATTT 636
Query 644 TCGGGTTTAACACCTTTTTGCCTAAGGGGTTTGAAATAACGCTTGATGAAGAAGAAGCTC 703
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 637 TCGGGTTTAACACCTTTTTGCCTAAGGGGTTTGAAATAACGCTTGATGATGTAGAAGCTC 696
Query 704 CACCAAAGAAAACTGTTAAATTTGAAGAAGCCATAAGCTTTGTTAATAAAATTAAGACAC 763
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CTTCAAAGAAAACTGTTGAATTTGAAGAAGCCATAAGCTTTGTTAATAAAATTAAGACAC 756
Query 764 GGTTCCAGCACGATGAACTTGTCTATAAGTC-TTTCCTGGAAATCTTAAATATGTATCGG 822
||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 757 GGTTCCAGCACAATGAACTTGTCTATAAGTCGTTT-CTGGAAATCTTAAATATGTATCGG 815
Query 823 AAGGATAATAAGGACATCACTGAGGTTTACAATGAGGTATCTACTCTTTTTGAGGACCAC 882
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 816 AAGGATAATAAGGACATCACTGAGGTTTACAATGAGGTGTCTACTCTTTTTGAGGACCAC 875
Query 883 TCGGATTTGCTTGAAGAGTTCACTAGGTTTTTACCGGACTCGTTGGCGCCTCATACAGAA 942
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 876 TCGGATTTGCTTGAAGAGTTCACTAGGTTTTTACCAGACTCGTTGGCGCCTCATACAGAA 935
Query 943 GCCCAGTTACTTCGGAGTCAAGCCCAACGGTATGATGACCGAGGATCAGGCCCTCCTCTT 1002
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 936 GCCCAGTTACTTCGTAGTCAAGCCCAACGGTATGATGACCGGGGATCAGGCCCTCCTCTT 995
Query 1003 GTACGTCGAATGTTTATGGAGAAGGATCGCCGACGAGAAAGGACTGTTGCTTCTCGGGGT 1062
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 996 GTGCGTCGAATGTTTATGGAGAAGGATCGCCGACGAGAAAGAACTGTTGCTTCTCGGGGT 1055
Query 1063 GACCGTGATCATAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATG 1122
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 GATCGTGATCACAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATG 1115
Query 1123 CACAGAGATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CACAGAGATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTG 1175
Query 1183 GAAGATGGAGAAGCAGAGCAAGATAACTTGCAACACTTTTCAGAGAAAAGGAAGTCATCG 1242
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1176 GAAGATGGAGAAGCAGAGCAAGATAACTTGCAACATTTTTCAGAGAAAAGGAAGTCCTCG 1235
Query 1243 AGAAGAATGGAGGGGTTTGAAGCTTACTCTGGTCCTGCTTCACATTCTGAGAAAAACAAT 1302
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1236 AGAAGAATGGAGGGGTTTGAAGCTTATTCTGGTCCTGCTTCACATTCTGAGAAAAACAAT 1295
Query 1303 CTAAAAAGTATGTACAACCAAGCATTTATGTTTTGTGAGAAAGTTAAGGAGAGATTATGC 1362
|||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1296 CTAAAAAGCATGTACAACCAAGCATTTTTGTTTTGTGAGAAAGTCAAGGAGAGATTATGC 1355
Query 1363 AGCCAAGATGATTATCAAGCATTCTTGAAGTGTCTCAATATTTTTAGCAATGGAATTATC 1422
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1356 AGCCAAGATGATTATCAAGCATTCTTGAAGTGTCTCAATATGTTTAGCAATGGAATTATC 1415
Query 1423 CAAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATG 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CAAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATG 1475
Query 1483 GATGAGTTCAATCAGTTCTTCGAGCGTTGTGAGAGTATTGATGGTTTCCAGCACCTCGCT 1542
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1476 GATGAGTTCAATCAGTTCTTTGAGCGTTGTGAGAGTATTGATGGTTTCCAGCACCTTGCT 1535
Query 1543 GGTGTTATGAGCAAAAAATCACTTAGTAGTGAAGAAAATTTATCTAGATCAATTAAGGGG 1602
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 1536 GGTGTTATGAGCAAAAAATCACTTGGTAGTGAAGAAAATTTATCTAGATCAGTGAAGGGG 1595
Query 1603 GAGGAAAAAGAAAGAGAACACAAACGTGACCTTGAGGCTGCTAAGGAAAAAGAGCGATCC 1662
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1596 GAGGAAAAAGATAGAGAACACAAACGTGACGTTGAGGCTGCTAAGGAAAAAGAGCGATCC 1655
Query 1663 AAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGCGAGCGTTGC 1722
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1656 AAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGTGAGCGTTGC 1715
Query 1723 ACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAATCCCGTCTGTGCGCCACAGACAG 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1716 ACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAATCCCGTCTGTGCGCCACAGACAG 1775
Query 1783 AAATCAGGAGCTGCTGTCTTAAATGATCACTGGGTTTCTGTCACTTCTGGAAGTGAAGAC 1842
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1776 AAATCAGGAGCTGCTGTGTTAAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAAGAC 1835
Query 1843 TACTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAAAGCTTGTTTAGATGTGAAGAT 1902
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1836 TACTCTTTTAAGCACATGCGCAGGAACCAATATGAAGAAAGCTTGTTTAGATGTGAAGAT 1895
Query 1903 GATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTGCAGAA 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 GATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTGCAGAA 1955
Query 1963 GAATTGTTGAATATTATCATTGAGAAGAAAATAAGTTTTGAGGGCTCCTTCCGGATTGAA 2022
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1956 GAATTGTTGAATATTATCATTGATAAGAAAATAAGTTTTGAGGGCTCCTTCCGGATTGAA 2015
Query 2023 GACCATTTCACAGCACTAAATTTAAGGTGCATAGAGAGACTTTATGGAGACCATGGTCTT 2082
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2016 GACCATTTCACAGCACTAAATCTAAGGTGTATAGAGAGACTTTATGGAGACCATGGTCTT 2075
Query 2083 GACGTGACGGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTAACTCGA 2142
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 GACGTGACAGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTAACTCGA 2135
Query 2143 TTGAAGCAGAAACAAGATGAATGGACAAAATGTCGTGAAGGTTTTAATGTGGTCTGGGCG 2202
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2136 TTGAAGCAGAAACAAGATGAATGGACAAAATGCCGTGAAGGTTTTAATGTGGTCTGGGCG 2195
Query 2203 GATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTTTAAACAG 2262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2196 GATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTTTAAGCAG 2255
Query 2263 CAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAATCAAGGACTTAAAAGAG 2322
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2256 CAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAGTCAAGGACTTGAAAGAG 2315
Query 2323 AAGTCTCAGAAAGAAGACGATGTTGTTCTGTCTATTTCTGCTGGTTACAGACAACCGATA 2382
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2316 AAGTCTCAGAAAGAAGACGATGTTGTTCTGTCTATTTCTGCTGGTTACAGGCAACCGATA 2375
Query 2383 ATTCCTCACCTCGAGTATGAATATCTCGACAGAACTATTCATGAAGACCTTTTCAAACTA 2442
|||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 2376 ATTCCTCACCTCGAGTATGACTATCTCGACAGAGCTATTCATGAAGACCTGTTCAAACTA 2435
Query 2443 GTCCAGTTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGATTGGTAAAGTTCTGAGG 2502
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2436 GTCCAATTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGACTGGTAAAGTTCTGAAG 2495
Query 2503 CTCTGGGCTAATTTTTTGGAGCTGATGCTTGGTGTTGCACCCAGGGCCAAGGGGTCAGAT 2562
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2496 CTCTGGGCTAATTTTTTGGAGCTGATGCTTGATGTTGCACCCAGGGCCAAGGGGTCAGAT 2555
Query 2563 TCTGTTGAAGATGTTGTAGAAACCAAGCATCA-CAGTGCATTTACCAGCGGGGAGGCTAA 2621
|||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||
Sbjct 2556 TCTGTTGAAGATGTTGTAGAAACCCAGCATCAGC-GTGCATTTACCAGTGGGGAGGCTAA 2614
Query 2622 TGTGAGTTCTGACGCGATTAGTTTGGTTTCCAGGCAACCAAAATTTGCTACCAATGGAGA 2681
|| ||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 2615 TGAGAGTTCTGATGCGATAAGTTTGGTTTCTAGGCAACTAAAATTTGCTACCAATGGAGA 2674
Query 2682 TGAGCATGCTTCATCTGGGGTCTCCAAACATGGTGGGACTGGTATT-TTGAATAGGGATT 2740
|| |||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||
Sbjct 2675 TGTGCATGCTTCATCTGGGGTCTCCAAGCATGGTGAGACTGGT-TTGTTGAATAGGGATT 2733
Query 2741 CTTCAGGGAAAGAAAATT-GTAAGGATGGTGATCCTT-CTAATAAAGATGTTGCCACCTG 2798
|||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||
Sbjct 2734 CTTCAGGGAAAGAAAATTTG-AAGGATGGTGATC-TTGCTAATAAAGATGTTGCCACCTG 2791
Query 2799 TGCTGAAAACCCCCAAAAAGATCAAGAAATTGGAAATGGAGCCGATAAAAGATCCGGGGA 2858
||||||||| |||||||||||||||||||||||||||||||| | ||||||||| || ||
Sbjct 2792 TGCTGAAAAACCCCAAAAAGATCAAGAAATTGGAAATGGAGCTGCTAAAAGATCTGGAGA 2851
Query 2859 TGTTGATGAAATAGTGGCCACGACAAGTGCATCTTTCCCAAGTGGGGTCGAAAACAATAA 2918
||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||
Sbjct 2852 TGTTGATGAAAGAGTGGCCACTTCAAGTTCGTCTTTCCCAAGTGGGGTCGAAAACAATAA 2911
Query 2919 TGGTAAAGTAGGAAACAGAGATTCGTCAGGTTTACGGGGAATTTTATCCAAACCAAGTGA 2978
|||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 2912 TGGTAAAGTAGGAAGCAGAGATTCGTCAGGTTCACGGGGCATATTATCCAAACCAAGTGA 2971
Query 2979 AGCTATAGATAAAGTTGATAGCATTCAACGTACACAGGGAGTTGATATAGGCAGAACTAT 3038
||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||
Sbjct 2972 AGCTATAGATAAAGTTGATAGCATTCAACATACGCAGGGAGTTGATATAGGCCGAATTAT 3031
Query 3039 AGTCTTAGCAAATGGTGTGCAGTCAGATACTTCTAAAGCCAACAGTAATTATGATGAAAC 3098
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3032 AGTCTTAGGAAATGGTCTGCAGTCAGATACTTCTAAAGCCAACAGTAATTATGATGAATC 3091
Query 3099 TGGTGGTCCATCCAAAATTGAGAAGGAGGAAGGTGAATTATCACCTGTTGGTGATTCCGA 3158
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3092 GGGTGGTCCATCCAAAATTGAGAAGGAGGAAGGTGAATTATCACCTGTTGGTGATTCCGA 3151
Query 3159 AGACAACTTTGTTGTTTATGAAGATCATG-GTTTGAAGGATACTGCCAAACCAGAACATT 3217
|||||||||||||||||| ||||||| || ||| ||||| |||||| ||| |||||||||
Sbjct 3152 AGACAACTTTGTTGTTTACGAAGATCGTGAGTT-GAAGGCTACTGCGAAAACAGAACATT 3210
Query 3218 CAGTTGAAGCTGAAGGAGAAAATGATGAGGACGCTGACGATGAGGATGGTGATGATGCTT 3277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3211 CAGTTGAAGCTGAAGGAGAAAATGATGAGGACGCTGACGATGAGGATGGTGATGATGCTT 3270
Query 3278 CAGAAGCTGGTGAGGATGCTTCGGGAACTGAATCTATTGGTGACGAATGTTCACAGGACG 3337
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3271 CCGAAGCTGGTGAGGATGCTTCGGGAACTGAATCTATTGGTGACGAATGTTCACAGGACG 3330
Query 3338 ATAATGGCGTGGAGGAAGAGGGTGAGCATGATGAGATTGATGGTAAAGCTGAAAGTGAAG 3397
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 ATAATGGCGTTGAGGAAGAGGGTGAGCATGATGAGATTGATGGTAAAGCTGAAAGTGAAG 3390
Query 3398 GAGAGGCAGAGGGAATGGAGTCACATCTTATAGAAGACAAAGGGTTGTTTCCATCATCAG 3457
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3391 GAGAGGCAGAGGGAATGGAGTCACATCTTATAGAAGACAAAGGGTTGTTTCCGTCATCAG 3450
Query 3458 AACGTGTTCTATTATCAGTTAAGCCTCTTTCAAAGCATGTAGCTGCAGCGGCTTTGCTTG 3517
|||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||
Sbjct 3451 AACGTGTTCTATTATCAGTTAAGCCTCTGTCAAAACATATAGCTGCAGCGGCTTTGGTTG 3510
Query 3518 ATGAGaaaaaaaaaGATTCCAGAGTTTTCTACGGGAATGACGACTTTTATGTTCTTTTCA 3577
|||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 3511 ATGAGAAAAAGAAGGATTCCAGAGTATTCTATGGGAATGACGACTTTTATGTCCTTTTCA 3570
Query 3578 GGCTTCATCGAGTGAGTGCAATCGTTTCTGATGATTTGCTTTCTCACATCCTGTACGAGA 3637
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 3571 GGCTTCATCGAGTGAGTGCAATTGATTCTTATGATTTGCTTTCTCACATCCTGTACGAGA 3630
Query 3638 GAATTCTGTCTGCAAAAACATATTGCTCCGGCGGTGAAATGAAACGGAAAAACACAAAAG 3697
||||||||||||| |||||||||||||||||| |||||||||||| || |||||| ||||
Sbjct 3631 GAATTCTGTCTGCGAAAACATATTGCTCCGGCAGTGAAATGAAACTGAGAAACACTAAAG 3690
Query 3698 ATACTAGTTCACCAGATCCTTATGCAAGGTTTATGAATGCTCTGTTTAGTCTGCTTAATG 3757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3691 ATACTTGTTCACCAGATCCTTATGCAAGGTTTATGAATGCTCTGTTTAGTCTGCTTAATG 3750
Query 3758 GCTCAGCTGAAAATTCCAAGTTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCAT 3817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3751 GCTCAGCTGAAAATTCCAAGTTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCAT 3810
Query 3818 ATGTTTTATTCACCTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTG 3877
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3811 ATGTTTTATTCACTTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTG 3870
Query 3878 TAGCTGACGATATGGACAATAAGCTTCTTCAGTTGTATGAGTATGAGAATTCCCGGAGAC 3937
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3871 TAGCTGACGACATGGACAATAAGCTTCTTCAGTTGTATGAGTATGAGAATTCCCGGAGAC 3930
Query 3938 CTGGGAGGGTATTTGACTCGGTATATTATGATAACGCTAGGATCCTCCTTCATGAGGAAA 3997
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 3931 CTGGGAGGGTATTTGACTCGGTATATTATGAAAACGCTAGGATCCTCCTTCATGAAGAAA 3990
Query 3998 ATATTTATCGGTTGGAATGTTCTTCCTCTCCATCTCGTTTGTCAATCCAGCTTATGGATA 4057
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3991 ATATTTATCGGTTAGAATGTTCTTCCTCTCCATCTCGTTTGTCAATCCAGCTTATGGATA 4050
Query 4058 ACATCATTGAAAAGCCCGAAGCTTATGCAGTTTCCATGGAACCCACGTTTGCGAGTTATT 4117
|||| |||||||||||||| ||||||||||| |||||||| ||||| ||| |||||||||
Sbjct 4051 ACATAATTGAAAAGCCCGACGCTTATGCAGTCTCCATGGAGCCCACATTTACGAGTTATT 4110
Query 4118 TGCAAAATGAGTTTCTCTCCAACTCATCAGGGAAAAAAGAGCTACAGGACATTGTGTTAC 4177
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 4111 TGCAAAATGAGTTTCTCTCCAACTCATCAGGGAAGAAAGAGCTACAGGACATTGTGCTAC 4170
Query 4178 AAAGGAACATGCGTGGATACACTGGTCTGGATGATCTTGCAGTAGCTTGCAAGGCCATGG 4237
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4171 AAAGGAACATGCGTGGATACAATGGTCTGGATGATCTTGCAGTAGCTTGCAAGGCCATGG 4230
Query 4238 AGGGCGTACAAGTAATTAATGGCCTTGAGTGCAAGATGTCTTGCTCTTCCTACAAGATTT 4297
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 4231 AAGGTGTACAAGTAATTAATGGCCTTGAATGCAAGATGTCTTGCTCTTCCTACAAGATTT 4290
Query 4298 CGTATGTTTTGGACACAGAGGATTTCTTCCACAGGAAGAAGAAACAGAAGAAGAGCAACA 4357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4291 CGTATGTTTTGGACACAGAGGATTTCTTCCACAGGAAGAAGAAACAGAAGAAGAGCAACA 4350
Query 4358 ACTTGTCACTGGATAAATTATCACAGAATAGAATAGAAAGATTCCACAAGTTTCTCTCAG 4417
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4351 ACTTGTCACTGGCTAAATTATCACAGAATAGAATAGCAAGATTCCACAAGTTTCTCTCAG 4410
Query 4418 CTTCAAGATGACAGCAAACAAGAACACGCAAAACTTTCATCTTCTCTTTACTTCAACACA 4477
|||||||||||||||||||||||||||||||||||| | |||| | | |||||||||||
Sbjct 4411 CTTCAAGATGACAGCAAACAAGAACACGCAAAACTT-C-TCTT-T-T--ACTTCAACACA 4464
Query 4478 CAAAGGAAGGTTAGAGTCGGACCAAGTTCTCTCTGCAACCTTCCCTATCCTT-GCACAGT 4536
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 4465 CAAAGGAAGGTTAGAG----ACCAAGTTCTCTCTGCAACCTTCCCTATCCTTTGCACAGT 4520
Query 4537 AGAGTGTATTTTCTAATTTTAATCTTGATATTAGGCTTGaaaaa----aaaTGTATGTTT 4592
|| |||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 4521 AGTGTGTATTTTCTAATTTTAATCTTGATTTTAGTTTTTTTTTTTTTTAAATGTATGTTT 4580
Query 4593 GTAAATATTGGAAACACATACACGGTT----ATGCTCTTGGTTTGTATCT--ACATAGAC 4646
||||||| ||||||||||||| |||| ||||||| |||||||||| ||||||||
Sbjct 4581 GTAAATAATGGAAACACATACGTGGTTGGTTATGCTCTCCGTTTGTATCTCTACATAGAC 4640
Query 4647 AGTTTCAAAA 4656
|| |||||||
Sbjct 4641 AGGTTCAAAA 4650
> AT3G01320.1 | Symbols: SNL1 | SIN3-like 1 | chr3:106655-113618
FORWARD LENGTH=4615
Length=4615
Score = 1951 bits (1056), Expect = 0.0
Identities = 2112/2610 (81%), Gaps = 119/2610 (5%)
Strand=Plus/Plus
Query 310 ATGAAGCGAATTAGGGATGATATTTACGCAACTGGGTCTCAATTTAAACGTCCT-TTGGG 368
|||||||| || || |||||| | || || ||||||||||||||| ||||||| || ||
Sbjct 76 ATGAAGCGGATAAGAGATGATGTATATGCCTCTGGGTCTCAATTTAGACGTCCTCTT-GG 134
Query 369 GTCTTCTCGTGGCGAATCATATGGGCAATCACCAATCC-CTGGAAACGGTGGTACCGGAG 427
|||||||| ||| ||| || ||| ||||| || ||| | || | |||| ||| ||
Sbjct 135 TTCTTCTCGAGGCCAATTATGTGGACAATCTCCGGTCCAC-GGCAGTGGTGACACC-GAA 192
Query 428 GTGGGAGCATTGGTGACGG-G--GGA-ATTAACACTCA-AAAGTTGACTACCGATGATGC 482
| | || | | || || | ||| | | | |||| ||| ||||| ||| |||||||
Sbjct 193 GAAGAAGAAGAAG-GAGGGAGCCGGAGAGT--CTCTCAGAAA-TTGACAACCAATGATGC 248
Query 483 TTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCAAAGGGATAAATATGATAT 542
||| | ||| | | ||||||||| |||||||||||||||||| | || |||||||| |
Sbjct 249 GTTGTCGTACCTGAGGGAAGTAAAAGAGATGTTTCAAGATCAACGCGAGAAATATGACAG 308
Query 543 GTTCCTTGAGGTTATGAAAGACTTTAAGGCACAATGGATCGATACA-GCTGGTGTGATTT 601
|||||| |||||||||||||| |||||||| ||| | | ||| ||| || ||||||||
Sbjct 309 GTTCCTCGAGGTTATGAAAGATTTTAAGGCTCAAAGAACCGACACAGGC-GGTGTGATCG 367
Query 602 CACGAGTGAAGCAGCTGTTTAAGGGGCATAACAATTTGATTT-TCGGGTTTAACACCTTT 660
|| |||| ||| | |||||||||| ||||| |||||||||| | || || |||||||||
Sbjct 368 CAAGAGTTAAGGAATTGTTTAAGGGACATAATAATTTGATTTAT-GGATTCAACACCTTT 426
Query 661 TTGCCTAAGGGGTTTGAAATAACGC---TTGATGAAGAAGAAGCTCCACCAAAGAAAACT 717
||||||||||| | |||||| |||| |||| ||||| || |||| |||||||| |||
Sbjct 427 TTGCCTAAGGGATATGAAATTACGCTTATTGAGGAAGACGACGCTCTGCCAAAGAAGACT 486
Query 718 GTTAAATTTGAAGAAGCCAT-AAGCTTTGTTAATAAAATTAAGACACGGTTCCAGCACGA 776
||| |||| ||| ||||||| || ||||| ||||||||||||| || ||| |||||||
Sbjct 487 GTTGAATTCGAACAAGCCATCAA-TTTTGTGAATAAAATTAAGATGCGATTCAAGCACGA 545
Query 777 TGAACTTGTCTATAAGTCTTTCCTGGAAATCTTAAATATGTATCGGAAGGATAATAAGGA 836
||||| ||||||||| |||||| |||||||||| |||||||| || ||||| || |||||
Sbjct 546 TGAACATGTCTATAAATCTTTCTTGGAAATCTTGAATATGTACCGAAAGGAGAACAAGGA 605
Query 837 CATCACTGAGGTTTACAATGAGGTATCTACTCTTTTT-GAGGACCACTCGGATTTGCTTG 895
|| | ||||| ||||| |||||||||| ||||||| ||| ||||| |||||||||||
Sbjct 606 AATTAAAGAGGTGTACAACGAGGTATCTATTCTTTTTCAAGG-CCACTTGGATTTGCTTG 664
Query 896 AAGAGTTCACTAGGTTTTTACCGGAC-TCGTTGGCGCCTCATACAGAAGCCCAG-TTACT 953
|| |||| ||||||||||| || | | || ||| | ||||| ||| ||| ||| ||
Sbjct 665 AACAGTTTACTAGGTTTTTGCCAG-CGTCTTTGCCATCTCATTCAGCAGCGCAGCATA-G 722
Query 954 TCGGAGTCAAGCCCAACGGTATGA-TGACCGAGGATCAGGCCCTCCTCTTGTACGTCGAA 1012
|||||||| || |||| ||| | ||||||||||||| ||||||||| | | || ||
Sbjct 723 CCGGAGTCAGGCTCAACAGTA-CAGCGACCGAGGATCAGACCCTCCTCTACTTCATCAAA 781
Query 1013 TGTTTA-TGGAGAAGGATCGCCGACGAGAAAGGACTGTTGCTTCT-CGGGGTGACCGTGA 1070
|| | |||| ||||| ||||||||||||||| ||||||| ||| || ||||| |
Sbjct 782 TG-CAAGTGGAAAAGGAACGCCGACGAGAAAGGGCTGTTGC-TCTCCGCGGTGA---T-- 834
Query 1071 TCATAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATGCACAGAGA 1130
| |||||||||| |||| ||||||||||||||||||| | ||||| ||||| || |||||
Sbjct 835 T-ATAGTGTTGAACGTTATGACCTTAATGATGATAAAACGATGGTGAAGATTCAAAGAGA 893
Query 1131 TCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTGGAAGATGG 1190
||| |||| || |||||||||| || || | ||||||| ||||||||||||| ||| |
Sbjct 894 GCAGCGGAAGCGCCTTGATAAGGAGAACAGGGCAAGGAGAGGCCGTGATTTGGACGATAG 953
Query 1191 AGAAGCAGAG-CAAGATAACTTGCAACACTTTT-CAGAGAAAAGGAAGTCATCGAGAAGA 1248
|||||||| | ||||||||| | || || |||| |||||||||| ||||| || ||||||
Sbjct 954 AGAAGCAG-GTCAAGATAACCTACACCA-TTTTCCAGAGAAAAGAAAGTCGTCCAGAAGA 1011
Query 1249 -ATGGAGGGGT-TTGAAGCTTACTCTGGTCCTGCTTCACATTCTGAGAAAAACAATCTAA 1306
| || | | ||||||| || |||||| |||||||||||||||||||| ||||| | |
Sbjct 1012 GCT-GA-AGCTCTTGAAGCATATTCTGGTTCTGCTTCACATTCTGAGAAAGACAATTTGA 1069
Query 1307 AAAGTATGTACAACCAAGCATTTATGTTT-TGTGAGAAAGTTAAGGAGAGATTATGCAGC 1365
||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| ||||||||
Sbjct 1070 AAAGTATGTACAAACAAGCATTCGT-TTTCTGTGAGAAAGTCAAGGATAGACTATGCAGC 1128
Query 1366 CAAGATGATTATCAAG-CATTCTTGAAGTGTCTCAATATTTTTAGCAATGGAATTATCCA 1424
||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1129 CAAGATGATTATC-AGACATTCTTGAAGTGCCTCAATATTTTTAGCAATGGAATAATCCA 1187
Query 1425 AAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATGGA 1484
|||||| |||||||| || |||||||| ||| | ||||| ||||| |||||||| |||||
Sbjct 1188 AAGGAAGGATCTGCAAAACTTGGTTTCTGATCTTCTTGGGAAATTTCCTGATCTGATGGA 1247
Query 1485 TGAGTTCAATCAGTTCTTCGAGCGTTGTGAGAGTA-T--TGATGG-TTTCCAGCACCTCG 1540
||||||||| |||||||||||||| |||||||||| | |||||| ||| |||| || |
Sbjct 1248 TGAGTTCAACCAGTTCTTCGAGCGGTGTGAGAGTATTACTGATGGATTT-CAGCGTCTTG 1306
Query 1541 CTGGTGTTATGAGCAAAAAATCACTTAGTAGTGAAGAAAATTTATCTAGATCAATTAAGG 1600
||||||||||||||||||||| | |||| || |||||| | ||||| || |||| ||||
Sbjct 1307 CTGGTGTTATGAGCAAAAAATTATTTAGCAGCGAAGAACAGTTATCCAGGCCAATGAAGG 1366
Query 1601 GGGAGGAAAAAGAAAGAGAACACAAACGTGACCTTGAGGCTGCT-AAGGAAAAAGAGCGA 1659
||| || |||||||| |||||||| | ||| || ||||||| | ||||||| |||| |
Sbjct 1367 TGGAAGAGAAAGAAAGTGAACACAAGCCTGAACTCGAGGCTG-TGAAGGAAACTGAGCAA 1425
Query 1660 TCCAAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGCGAGCGT 1719
| |||| | |||||||||| ||||||||||||||||| ||||| |||||||||||| ||
Sbjct 1426 TGCAAGAAGGAGTACATGGGAAAATCTATTCAAGAGCTCGATCTCTCTGATTGCGAGTGT 1485
Query 1720 TGCACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAAT-CCCGTCTGTGCGCCACAG 1778
||||||||||||||||||||||| ||| | |||||||| || || | || | | || ||
Sbjct 1486 TGCACTCCTAGCTACCGGCTTCTGCCTGCGGATTATCCGATACCAAT-TGCGAGTCAGAG 1544
Query 1779 A-CAGAAATCAGGAGCTGCTGTCTTAAATGATCACTGGGTTTCTGTCACTTCTGGAAGTG 1837
| | || | |||||||| || ||||||||||| ||||| ||||||||||| |||||||
Sbjct 1545 ATCGGAGCT-AGGAGCTGAGGTTTTAAATGATCATTGGGTATCTGTCACTTCCGGAAGTG 1603
Query 1838 AAGACTACTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAAAGCTTGTTTAGATGTG 1897
|||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 1604 AAGATTATTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAGAGCTTGTTCAGATGCG 1663
Query 1898 AAGATGATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTG 1957
|||||||||||||||||||||||||| || ||||||||||| | ||||| |||| |||||
Sbjct 1664 AAGATGATAGATTTGAGTTGGACATGTTGCTGGAATCTGTGAGCTCTGCGGCCAGAAGTG 1723
Query 1958 CAGAAGAATT-GTTGAATATTATCATTGAGAAGAAAATAAGTTTTGAGGGCTCCTTCCGG 2016
||||| | || |||||| || |||| |||||||||||||||||| ||||||||| ||
Sbjct 1724 CAGAA-AGTTTGTTGAACATCATCACAGAGAAGAAAATAAGTTTTTCTGGCTCCTTCAGG 1782
Query 2017 ATTGAAGACCATTTCACAGCACTAAATTTAAGGTGCATAGAGAGACTTTATGGAGACCAT 2076
|| ||||||||||| || || |||||||||||||| || ||| |||||||||| ||||||
Sbjct 1783 ATCGAAGACCATTTTACGGCCCTAAATTTAAGGTGTATTGAGCGACTTTATGGCGACCAT 1842
Query 2077 GGTCTTGACGTGACGGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTA 2136
||||||||||||| ||| || || |||||||||||| |||||||||||||||| |||
Sbjct 1843 GGTCTTGACGTGATAGACATATTAAATAAGAATCCAGCCACTGCACTTCCTGTAATCCTA 1902
Query 2137 ACTCGATTGAAGCAGAAACAAGATGAATGGACA-AAATGTCGTGAAGGTTTTAATGTGGT 2195
||||| || ||||||||||||| |||||||| | ||||| ||||| | |||| || |||
Sbjct 1903 ACTCGTTTAAAGCAGAAACAAGGTGAATGGA-AGAAATGCCGTGACGATTTTGATAAGGT 1961
Query 2196 CTGGGCGGATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTT 2255
||||||| | || ||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1962 CTGGGCGAACGTATATGCAAAAAACCATTACAAGTCACTTGATCACCGCAGCTTCTACTT 2021
Query 2256 TAAACAGCAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAATCAAGGA-CT 2314
|| || |||||||| ||||| |||||||||||| | || || ||||||| ||||| ||
Sbjct 2022 CAAGCAACAAGATTCAAAGAACTTGAGTGCAAAATCATTGTTGGCTGAAATTAAGGAGCT 2081
Query 2315 TAAAAGAGAAGTCTCAGAAAGAAGACGATGTTGT-TCTGTCTATTTCTGCTGGTTACAGA 2373
||| |||||||||||||| || || |||||| | | |||||||||||||||||||||||
Sbjct 2082 GAAA-GAGAAGTCTCAGAATGATGATGATGTTCTGT-TGTCTATTTCTGCTGGTTACAGA 2139
Query 2374 CAACCGATAATTCCTCACCTCGAGTATGAATATCTCGA-CAGAACTATTCATGAAGACCT 2432
||||| |||| |||| | || || ||||| ||| | || |||| |||||||||||||| |
Sbjct 2140 CAACCTATAAATCCTAATCTTGAATATGAGTATTT-GAACAGAGCTATTCATGAAGACAT 2198
Query 2433 TTTCAAACTAGTCCAGTTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGATTGGTAA 2492
|||||| ||||||||||||| ||||||||| |||||||||||||||| ||| | ||||
Sbjct 2199 GTTCAAAGTAGTCCAGTTTTCATGTGAGGAGTTATGTTCTACAAAAGAACAGCTCAGTAA 2258
Query 2493 AGTTCTGAGGCTCTGGGCTAATTTTTTGGAG-CTGATGCTTGGTGTTGCACCCAGGGCCA 2551
|||||||||||| |||| ||||| ||||| | | |||| |||||| | ||||||||||
Sbjct 2259 AGTTCTGAGGCTTTGGGAAAATTTCCTGGAGGCAG-TGCTGGGTGTTCCTCCCAGGGCCA 2317
Query 2552 AGGGGTCAGATTCT-GTTGAAGATGTTGTAG-AAACC--AAG-C-----AT------CAC 2595
|||| ||||| || ||||||||||||||| ||||| ||| | || |||
Sbjct 2318 AGGGCACAGAT-CTTGTTGAAGATGTTGTAATAAACCCCAAGACTCTCGATGTGAATCAC 2376
Query 2596 AGTGCATTTACC-AGCGGGGAGGCTAATGTGAGTTCTG-ACGCGATT-AGT----TTGGT 2648
|| ||| | || | |||||||||| ||||||||||| | | || || ||||
Sbjct 2377 AGCACATCT-CCTAACGGGGAGGCTGCTGTGAGTTCTGGAGGAGACACAGCAAGGTTGGC 2435
Query 2649 TTCCAGGCAACCAAAATTTGCTACCAATGGAGATGAGCATGCTTCATCTGGGGTC-TCCA 2707
||| ||| ||| |||| |||| |||||||||||||| || ||||||||||| | | ||
Sbjct 2436 TTCTAGGAAACTTAAATCTGCTGCCAATGGAGATGAGAATTCTTCATCTGGGA-CATTCA 2494
Query 2708 AACATGGTGGGACTGGTATT-TTGAATAGGGATTCTTCAGGGAAAGAAAAT-T-GTAAGG 2764
||||||| | | ||| || || |||| ||||| |||||||||||||| | | |||
Sbjct 2495 AACATGG-GATA--GGT-TTGTTAAATAAAGATTCGACAGGGAAAGAAAATCTTG-AAG- 2548
Query 2765 ATGGTGATCCTT-CTAATAAAGATG-T-T-GCCACCTGTGCTGA-AAACCCCCAAAAAGA 2819
||| ||| | |||| | ||||| | | ||| || ||||| ||||| | | |||||
Sbjct 2549 ATGTTGAAA-TAGCTAACAGAGATGGTGTTGCCTGCTCTGCTGTGAAACCTC-AGAAAGA 2606
Query 2820 TCAAGAAATTGGAAATGGAGCCGATAAAAG 2849
||||||| |||||||| |||||| |||||
Sbjct 2607 ACAAGAAACTGGAAATGAAGCCGAGAAAAG 2636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 233627453551
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5